Wall clock time and date at job start Tue Mar 31 2020 01:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47164 * 2 1 4 4 H 1.09002 * 109.47212 * 54.26831 * 3 2 1 5 5 S 1.81404 * 109.47032 * 294.27121 * 3 2 1 6 6 C 1.81405 * 102.99955 * 173.38400 * 5 3 2 7 7 C 1.50697 * 109.47133 * 174.27091 * 3 2 1 8 8 O 1.21269 * 120.00279 * 34.99866 * 7 3 2 9 9 N 1.34786 * 119.99564 * 215.00197 * 7 3 2 10 10 C 1.39268 * 119.99567 * 174.97953 * 9 7 3 11 11 C 1.39674 * 119.57565 * 185.41936 * 10 9 7 12 12 C 1.38654 * 119.50013 * 179.97438 * 11 10 9 13 13 C 1.38344 * 118.66445 * 0.02562 * 12 11 10 14 14 C 1.40580 * 119.13332 * 359.97438 * 13 12 11 15 15 C 1.41339 * 119.78479 * 180.02562 * 14 13 12 16 16 H 1.07998 * 120.00043 * 0.02562 * 15 14 13 17 17 C 1.40031 * 119.99543 * 180.02562 * 15 14 13 18 18 N 1.30745 * 120.00075 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99772 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.46958 * 90.00217 * 19 17 15 21 21 H 1.48496 * 109.47167 * 210.00000 * 19 17 15 22 22 H 1.48500 * 109.47005 * 330.00448 * 19 17 15 23 23 N 1.31902 * 119.57830 * 5.14450 * 10 9 7 24 24 H 1.08997 * 109.47049 * 305.11770 * 1 2 3 25 25 H 1.09004 * 109.46788 * 65.11607 * 1 2 3 26 26 H 1.09000 * 109.46884 * 185.11304 * 1 2 3 27 27 H 1.08996 * 109.47276 * 240.00030 * 2 1 3 28 28 H 1.09003 * 109.46949 * 119.99867 * 2 1 3 29 29 H 1.08999 * 109.46897 * 295.11931 * 6 5 3 30 30 H 1.08993 * 109.47023 * 175.11604 * 6 5 3 31 31 H 1.08998 * 109.47281 * 55.11732 * 6 5 3 32 32 H 0.97001 * 120.00135 * 354.97402 * 9 7 3 33 33 H 1.08006 * 120.24618 * 359.97438 * 11 10 9 34 34 H 1.07995 * 120.66653 * 180.02562 * 12 11 10 35 35 H 1.08007 * 120.43072 * 179.97438 * 13 12 11 36 36 H 0.97002 * 119.99422 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5953 1.9851 0.8342 5 16 1.5788 2.2469 -1.5591 6 6 2.0786 3.9702 -1.2926 7 6 3.5403 1.4448 0.1418 8 8 4.1993 0.5659 -0.3718 9 7 4.1496 2.4238 0.8397 10 6 5.5238 2.3703 1.0597 11 6 6.1286 3.3267 1.8785 12 6 7.4968 3.2716 2.0969 13 6 8.2253 2.2633 1.4915 14 6 7.5584 1.3305 0.6783 15 6 8.2891 0.2945 0.0536 16 1 9.3563 0.2210 0.2020 17 6 7.6293 -0.6367 -0.7578 18 7 6.3374 -0.5475 -0.9378 19 14 8.5950 -2.0065 -1.5829 20 1 8.6388 -3.1902 -0.6872 21 1 7.9353 -2.3769 -2.8607 22 1 9.9784 -1.5413 -1.8565 23 7 6.2366 1.4140 0.4965 24 1 -0.3633 0.5912 0.8406 25 1 -0.3633 0.4324 -0.9323 26 1 -0.3633 -1.0236 0.0916 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 1.4783 4.4030 -0.4923 30 1 1.9255 4.5389 -2.2098 31 1 3.1322 4.0043 -1.0156 32 1 3.6311 3.1657 1.1886 33 1 5.5351 4.1032 2.3380 34 1 7.9838 4.0011 2.7269 35 1 9.2926 2.1937 1.6418 36 1 5.8803 -1.1928 -1.4996 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882473686.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:15 Heat of formation + Delta-G solvation = -4.152089 kcal Electronic energy + Delta-G solvation = -19956.203836 eV Core-core repulsion = 16952.587833 eV Total energy + Delta-G solvation = -3003.616003 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.07340 -39.39377 -36.05932 -35.35773 -34.88375 -32.25258 -31.28227 -29.86008 -28.73282 -27.38180 -24.18484 -23.25310 -22.49592 -21.07416 -19.64712 -18.11757 -17.89514 -17.54248 -16.51727 -16.28927 -16.12573 -15.59328 -15.53208 -15.18070 -14.66473 -14.54937 -14.34984 -13.88052 -13.80430 -13.70361 -13.08584 -12.92043 -12.76186 -12.68726 -12.57551 -12.33797 -12.12915 -11.95106 -11.78696 -11.53279 -11.10305 -10.87963 -10.68311 -9.91670 -9.16737 -8.85750 -8.63210 -8.06672 -6.43308 0.42131 0.92676 1.23339 1.38824 1.44618 1.51270 1.53616 2.13796 2.25288 2.36228 2.98978 3.57275 3.68007 4.01935 4.07553 4.27167 4.32292 4.35627 4.40973 4.50892 4.71617 4.81034 4.85554 4.88214 4.94758 5.03221 5.09517 5.18870 5.26963 5.41266 5.66388 5.81432 5.91033 6.12727 6.34747 6.67662 6.81072 7.05969 7.60964 8.32225 8.54921 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.015857 B = 0.006613 C = 0.005196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1765.411411 B = 4232.899176 C = 5387.542664 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.090 4.090 3 C -0.060 4.060 4 H 0.130 0.870 5 S -0.243 6.243 6 C -0.126 4.126 7 C 0.465 3.535 8 O -0.442 6.442 9 N -0.654 5.654 10 C 0.350 3.650 11 C -0.346 4.346 12 C -0.034 4.034 13 C -0.329 4.329 14 C 0.237 3.763 15 C -0.465 4.465 16 H 0.085 0.915 17 C 0.012 3.988 18 N -0.689 5.689 19 Si 0.973 3.027 20 H -0.265 1.265 21 H -0.274 1.274 22 H -0.255 1.255 23 N -0.507 5.507 24 H 0.072 0.928 25 H 0.063 0.937 26 H 0.067 0.933 27 H 0.054 0.946 28 H 0.068 0.932 29 H 0.108 0.892 30 H 0.115 0.885 31 H 0.062 0.938 32 H 0.417 0.583 33 H 0.132 0.868 34 H 0.137 0.863 35 H 0.104 0.896 36 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.223 5.808 1.956 13.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.128 4.128 3 C -0.192 4.192 4 H 0.148 0.852 5 S -0.017 6.017 6 C -0.295 4.295 7 C 0.246 3.754 8 O -0.307 6.307 9 N -0.303 5.303 10 C 0.111 3.889 11 C -0.371 4.371 12 C -0.058 4.058 13 C -0.352 4.352 14 C 0.111 3.889 15 C -0.496 4.496 16 H 0.103 0.897 17 C -0.214 4.214 18 N -0.308 5.308 19 Si 0.794 3.206 20 H -0.190 1.190 21 H -0.199 1.199 22 H -0.179 1.179 23 N -0.227 5.227 24 H 0.091 0.909 25 H 0.082 0.918 26 H 0.086 0.914 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.127 0.873 30 H 0.134 0.866 31 H 0.081 0.919 32 H 0.254 0.746 33 H 0.150 0.850 34 H 0.155 0.845 35 H 0.122 0.878 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.885 3.953 0.001 13.477 hybrid contribution 1.465 0.943 1.361 2.211 sum -11.419 4.896 1.362 12.499 Atomic orbital electron populations 1.21755 0.91989 1.02805 1.03134 1.21150 0.98136 0.91046 1.02516 1.23431 0.93159 1.02922 0.99692 0.85236 1.86929 1.80163 1.09537 1.25112 1.23594 1.04217 0.93662 1.08010 1.21404 0.90501 0.83256 0.80251 1.91152 1.64952 1.34189 1.40409 1.43462 1.05459 1.26191 1.55235 1.19115 0.85260 0.92259 0.92290 1.20968 0.96128 1.06540 1.13509 1.21031 0.93411 0.95739 0.95619 1.21809 0.99690 1.02986 1.10732 1.18867 0.88104 0.92047 0.89857 1.19903 0.95543 1.09035 1.25080 0.89651 1.27015 0.96146 1.01004 0.97203 1.70502 1.08537 1.28726 1.23074 0.85353 0.79321 0.78054 0.77870 1.19042 1.19915 1.17904 1.68645 1.06674 1.22055 1.25325 0.90856 0.91787 0.91413 0.92702 0.91324 0.87304 0.86632 0.91856 0.74609 0.85049 0.84536 0.87812 0.91925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.80 9.66 71.98 0.70 -2.10 16 2 C -0.09 -2.53 4.96 30.59 0.15 -2.38 16 3 C -0.06 -1.71 2.60 29.85 0.08 -1.64 16 4 H 0.13 2.74 8.13 -2.39 -0.02 2.72 16 5 S -0.24 -6.65 20.71 -56.49 -1.17 -7.82 16 6 C -0.13 -2.64 10.60 113.37 1.20 -1.44 16 7 C 0.47 18.61 6.43 87.65 0.56 19.17 16 8 O -0.44 -22.91 12.16 -2.99 -0.04 -22.94 16 9 N -0.65 -24.73 4.93 -308.36 -1.52 -26.26 16 10 C 0.35 16.79 7.43 133.25 0.99 17.78 16 11 C -0.35 -14.60 9.95 22.72 0.23 -14.38 16 12 C -0.03 -1.47 10.15 22.39 0.23 -1.24 16 13 C -0.33 -16.68 9.83 22.87 0.22 -16.46 16 14 C 0.24 13.75 6.55 40.20 0.26 14.01 16 15 C -0.46 -26.70 9.14 23.47 0.21 -26.48 16 16 H 0.09 4.60 7.85 -2.91 -0.02 4.57 16 17 C 0.01 0.65 5.50 85.29 0.47 1.12 16 18 N -0.69 -40.13 9.00 21.84 0.20 -39.93 16 19 Si 0.97 41.27 29.56 68.60 2.03 43.30 16 20 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 21 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 22 H -0.26 -10.35 7.11 99.48 0.71 -9.64 16 23 N -0.51 -29.21 5.74 -186.36 -1.07 -30.27 16 24 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.06 1.31 7.35 -2.38 -0.02 1.29 16 26 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.05 1.86 8.04 -2.39 -0.02 1.84 16 28 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 29 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.12 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.06 1.60 7.48 -2.39 -0.02 1.58 16 32 H 0.42 11.48 8.69 -92.71 -0.81 10.67 16 33 H 0.13 4.39 8.06 -2.91 -0.02 4.36 16 34 H 0.14 4.71 8.06 -2.91 -0.02 4.69 16 35 H 0.10 4.91 8.06 -2.91 -0.02 4.89 16 36 H 0.27 14.91 8.29 -92.71 -0.77 14.14 16 Total: -1.00 -73.65 316.94 4.01 -69.64 By element: Atomic # 1 Polarization: 28.03 SS G_CDS: 0.28 Total: 28.32 kcal Atomic # 6 Polarization: -19.33 SS G_CDS: 5.30 Total: -14.03 kcal Atomic # 7 Polarization: -94.07 SS G_CDS: -2.39 Total: -96.46 kcal Atomic # 8 Polarization: -22.91 SS G_CDS: -0.04 Total: -22.94 kcal Atomic # 14 Polarization: 41.27 SS G_CDS: 2.03 Total: 43.30 kcal Atomic # 16 Polarization: -6.65 SS G_CDS: -1.17 Total: -7.82 kcal Total: -73.65 4.01 -69.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882473686.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.486 kcal (2) G-P(sol) polarization free energy of solvation -73.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds