Wall clock time and date at job start Tue Mar 31 2020 01:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.31882 * 119.61583 * 2 1 4 4 C 1.31861 * 121.72157 * 180.31481 * 3 2 1 5 5 C 1.38223 * 120.76482 * 359.70286 * 4 3 2 6 6 C 1.38626 * 119.16353 * 0.02562 * 5 4 3 7 7 C 1.38179 * 119.61722 * 179.73412 * 2 1 3 8 8 C 1.50702 * 120.42044 * 359.97351 * 7 2 1 9 9 C 1.53001 * 109.47325 * 84.72254 * 8 7 2 10 10 N 1.46493 * 109.47084 * 180.02562 * 9 8 7 11 11 C 1.34784 * 119.99864 * 180.02562 * 10 9 8 12 12 O 1.21283 * 119.99649 * 359.72839 * 11 10 9 13 13 C 1.50694 * 119.99988 * 179.72721 * 11 10 9 14 14 S 1.81005 * 109.47244 * 179.97438 * 13 11 10 15 15 C 1.76192 * 100.00090 * 179.97438 * 14 13 11 16 16 H 1.08001 * 120.00308 * 0.02562 * 15 14 13 17 17 C 1.38797 * 119.99747 * 180.02562 * 15 14 13 18 18 N 1.31628 * 120.00171 * 359.97438 * 17 15 14 19 19 Si 1.86808 * 119.99848 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47396 * 59.99622 * 19 17 15 21 21 H 1.48504 * 109.46972 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46804 * 299.99684 * 19 17 15 23 23 H 1.09000 * 109.46985 * 270.26921 * 1 2 3 24 24 H 1.08998 * 109.46711 * 30.27167 * 1 2 3 25 25 H 1.08996 * 109.46904 * 150.26790 * 1 2 3 26 26 H 1.07997 * 119.61348 * 179.72687 * 4 3 2 27 27 H 1.08000 * 120.41778 * 179.97438 * 5 4 3 28 28 H 1.08000 * 120.79534 * 179.97438 * 6 5 4 29 29 H 1.09007 * 109.47034 * 324.72832 * 8 7 2 30 30 H 1.08993 * 109.47357 * 204.72828 * 8 7 2 31 31 H 1.09007 * 109.46593 * 60.00308 * 9 8 7 32 32 H 1.09006 * 109.47216 * 300.00766 * 9 8 7 33 33 H 0.97000 * 120.00740 * 359.72857 * 10 9 8 34 34 H 1.08998 * 109.47224 * 299.99701 * 13 11 10 35 35 H 1.09002 * 109.47054 * 60.00213 * 13 11 10 36 36 H 0.97000 * 119.99868 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1588 1.1465 0.0000 4 6 3.4765 1.1950 -0.0062 5 6 4.2267 0.0341 -0.0067 6 6 3.5767 -1.1903 -0.0013 7 6 2.1900 -1.2012 0.0056 8 6 1.4373 -2.5068 0.0122 9 6 1.0670 -2.8894 -1.4221 10 7 0.3349 -4.1583 -1.4156 11 6 -0.0948 -4.6944 -2.5751 12 8 0.1204 -4.1238 -3.6235 13 6 -0.8426 -6.0027 -2.5690 14 16 -1.2820 -6.4546 -4.2657 15 6 -2.1200 -7.9760 -3.9700 16 1 -2.2251 -8.3474 -2.9613 17 6 -2.6450 -8.6971 -5.0333 18 7 -2.5174 -8.2442 -6.2626 19 14 -3.5341 -10.3099 -4.7197 20 1 -4.7043 -10.0668 -3.8384 21 1 -3.9971 -10.8791 -6.0108 22 1 -2.6081 -11.2655 -4.0606 23 1 -0.3633 0.0048 1.0277 24 1 -0.3633 0.8875 -0.5180 25 1 -0.3633 -0.8924 -0.5097 26 1 3.9753 2.1529 -0.0104 27 1 5.3057 0.0803 -0.0122 28 1 4.1368 -2.1137 -0.0020 29 1 0.5292 -2.3997 0.6056 30 1 2.0646 -3.2857 0.4456 31 1 1.9752 -2.9966 -2.0155 32 1 0.4397 -2.1105 -1.8556 33 1 0.1630 -4.6148 -0.5772 34 1 -0.2117 -6.7798 -2.1375 35 1 -1.7503 -5.8996 -1.9742 36 1 -2.8840 -8.7484 -7.0057 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890836673.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:20 Heat of formation + Delta-G solvation = -16.970331 kcal Electronic energy + Delta-G solvation = -18201.534667 eV Core-core repulsion = 15197.362824 eV Total energy + Delta-G solvation = -3004.171843 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.71174 -39.14145 -35.81248 -33.43687 -33.24347 -32.43357 -30.23051 -28.58949 -27.53994 -25.50201 -24.05834 -22.62465 -21.60228 -20.37907 -17.85756 -17.15408 -16.70982 -16.28821 -16.09642 -15.39468 -15.03190 -14.80859 -14.65155 -14.11680 -13.93743 -13.43212 -13.33126 -13.19214 -12.76254 -12.57639 -12.46525 -12.24596 -12.18387 -11.76224 -11.37895 -11.05219 -11.04211 -10.77718 -10.03837 -9.83370 -9.73384 -9.43499 -9.07133 -9.06626 -8.92203 -8.24644 -6.50809 -6.21950 -3.92817 0.77634 0.98085 3.00975 3.08119 3.23092 3.26950 3.29969 3.45978 3.69801 4.04276 4.20039 4.41163 4.45870 4.60878 4.67068 4.77635 4.97106 5.13055 5.16678 5.18155 5.26015 5.29286 5.35776 5.45223 5.60568 5.65648 5.76701 5.86388 5.87964 5.95145 6.01220 6.12564 6.41682 6.56883 7.58650 7.67411 7.71360 8.34472 8.59164 9.23126 10.85427 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.049393 B = 0.002616 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.742481 B =10701.550488 C =10723.682089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.136 3.864 3 N -0.485 5.485 4 C 0.099 3.901 5 C -0.179 4.179 6 C -0.067 4.067 7 C -0.131 4.131 8 C -0.088 4.088 9 C 0.125 3.875 10 N -0.740 5.740 11 C 0.531 3.469 12 O -0.516 6.516 13 C -0.153 4.153 14 S -0.060 6.060 15 C -0.536 4.536 16 H 0.072 0.928 17 C 0.073 3.927 18 N -0.868 5.868 19 Si 0.919 3.081 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.274 1.274 23 H 0.079 0.921 24 H 0.079 0.921 25 H 0.081 0.919 26 H 0.155 0.845 27 H 0.135 0.865 28 H 0.135 0.865 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.398 0.602 34 H 0.090 0.910 35 H 0.090 0.910 36 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.670 14.035 16.994 24.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.002 4.002 3 N -0.194 5.194 4 C -0.058 4.058 5 C -0.199 4.199 6 C -0.093 4.093 7 C -0.134 4.134 8 C -0.127 4.127 9 C 0.001 3.999 10 N -0.395 5.395 11 C 0.317 3.683 12 O -0.390 6.390 13 C -0.304 4.304 14 S 0.166 5.834 15 C -0.685 4.685 16 H 0.090 0.910 17 C -0.136 4.136 18 N -0.503 5.503 19 Si 0.745 3.255 20 H -0.199 1.199 21 H -0.208 1.208 22 H -0.199 1.199 23 H 0.097 0.903 24 H 0.098 0.902 25 H 0.100 0.900 26 H 0.172 0.828 27 H 0.152 0.848 28 H 0.153 0.847 29 H 0.104 0.896 30 H 0.100 0.900 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.232 0.768 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 10.511 15.754 15.026 24.175 hybrid contribution -0.187 -2.654 1.821 3.224 sum 10.324 13.099 16.847 23.707 Atomic orbital electron populations 1.20859 0.88754 1.04167 1.03210 1.21210 0.97085 0.87725 0.94187 1.67547 1.10098 1.29217 1.12584 1.22749 0.89474 0.98525 0.95083 1.22124 1.01522 0.93422 1.02807 1.21545 0.93700 0.98689 0.95332 1.20502 0.94365 0.95794 1.02704 1.20747 1.00689 0.93917 0.97323 1.21239 0.96948 0.86254 0.95429 1.45999 1.59684 1.24254 1.09571 1.20330 0.78463 0.86351 0.83141 1.90712 1.55336 1.62079 1.30914 1.23530 1.02144 0.96228 1.08484 1.85416 1.72397 1.27384 0.98191 1.22824 1.41956 1.07672 0.95999 0.90966 1.24996 0.95786 0.98378 0.94431 1.70008 1.43260 1.38504 0.98522 0.86222 0.79658 0.81900 0.77702 1.19931 1.20809 1.19942 0.90258 0.90233 0.90035 0.82787 0.84752 0.84669 0.89630 0.89969 0.91522 0.91300 0.76772 0.89200 0.89163 0.92111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.96 9.39 36.01 0.34 -0.62 16 2 C 0.14 1.38 6.78 -82.59 -0.56 0.82 16 3 N -0.49 -5.37 10.27 -9.47 -0.10 -5.47 16 4 C 0.10 0.87 11.18 -17.54 -0.20 0.67 16 5 C -0.18 -1.36 10.11 -39.44 -0.40 -1.76 16 6 C -0.07 -0.54 9.84 -39.28 -0.39 -0.93 16 7 C -0.13 -1.19 5.15 -104.48 -0.54 -1.73 16 8 C -0.09 -0.69 4.77 -27.88 -0.13 -0.82 16 9 C 0.13 1.41 5.46 -4.04 -0.02 1.39 16 10 N -0.74 -9.34 5.56 -60.29 -0.33 -9.67 16 11 C 0.53 9.75 7.85 -10.98 -0.09 9.66 16 12 O -0.52 -11.75 15.86 5.56 0.09 -11.66 16 13 C -0.15 -3.03 6.16 36.00 0.22 -2.81 16 14 S -0.06 -1.64 20.57 -107.50 -2.21 -3.85 16 15 C -0.54 -15.21 9.50 30.94 0.29 -14.91 16 16 H 0.07 1.93 7.80 -52.49 -0.41 1.52 16 17 C 0.07 2.09 5.49 -17.43 -0.10 2.00 16 18 N -0.87 -26.16 13.22 55.49 0.73 -25.43 16 19 Si 0.92 21.30 29.55 -169.99 -5.02 16.28 16 20 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 23 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 25 H 0.08 0.67 5.40 -51.93 -0.28 0.39 16 26 H 0.15 0.93 8.06 -52.49 -0.42 0.51 16 27 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 28 H 0.14 0.84 8.06 -52.49 -0.42 0.41 16 29 H 0.09 0.57 7.02 -51.93 -0.36 0.20 16 30 H 0.08 0.53 8.06 -51.93 -0.42 0.11 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.07 0.86 6.88 -51.93 -0.36 0.50 16 33 H 0.40 3.70 8.47 -40.82 -0.35 3.35 16 34 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 35 H 0.09 1.63 8.14 -51.91 -0.42 1.21 16 36 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 324.88 15.07 4.90 4.90 Total: -1.00 -35.66 324.88 -8.21 -43.86 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -4.69 Total: 0.09 kcal Atomic # 6 Polarization: -7.49 SS G_CDS: -1.56 Total: -9.05 kcal Atomic # 7 Polarization: -40.87 SS G_CDS: 0.30 Total: -40.57 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.09 Total: -11.66 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: -1.64 SS G_CDS: -2.21 Total: -3.85 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -35.66 -8.21 -43.86 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890836673.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.892 kcal (2) G-P(sol) polarization free energy of solvation -35.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds