Wall clock time and date at job start Tue Mar 31 2020 01:08:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 N 1.31882 * 119.61583 * 2 1 4 4 C 1.31861 * 121.72157 * 180.31481 * 3 2 1 5 5 C 1.38223 * 120.76482 * 359.70286 * 4 3 2 6 6 C 1.38626 * 119.16353 * 0.02562 * 5 4 3 7 7 C 1.38179 * 119.61722 * 179.73412 * 2 1 3 8 8 C 1.50702 * 120.42044 * 359.97351 * 7 2 1 9 9 C 1.53001 * 109.47325 * 84.72254 * 8 7 2 10 10 N 1.46493 * 109.47084 * 180.02562 * 9 8 7 11 11 C 1.34784 * 119.99864 * 180.02562 * 10 9 8 12 12 O 1.21283 * 119.99649 * 359.72839 * 11 10 9 13 13 C 1.50694 * 119.99988 * 179.72721 * 11 10 9 14 14 S 1.81005 * 109.47244 * 179.97438 * 13 11 10 15 15 C 1.76192 * 100.00090 * 179.97438 * 14 13 11 16 16 H 1.08001 * 120.00308 * 0.02562 * 15 14 13 17 17 C 1.38797 * 119.99747 * 180.02562 * 15 14 13 18 18 N 1.31628 * 120.00171 * 359.97438 * 17 15 14 19 19 Si 1.86808 * 119.99848 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47396 * 59.99622 * 19 17 15 21 21 H 1.48504 * 109.46972 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.46804 * 299.99684 * 19 17 15 23 23 H 1.09000 * 109.46985 * 270.26921 * 1 2 3 24 24 H 1.08998 * 109.46711 * 30.27167 * 1 2 3 25 25 H 1.08996 * 109.46904 * 150.26790 * 1 2 3 26 26 H 1.07997 * 119.61348 * 179.72687 * 4 3 2 27 27 H 1.08000 * 120.41778 * 179.97438 * 5 4 3 28 28 H 1.08000 * 120.79534 * 179.97438 * 6 5 4 29 29 H 1.09007 * 109.47034 * 324.72832 * 8 7 2 30 30 H 1.08993 * 109.47357 * 204.72828 * 8 7 2 31 31 H 1.09007 * 109.46593 * 60.00308 * 9 8 7 32 32 H 1.09006 * 109.47216 * 300.00766 * 9 8 7 33 33 H 0.97000 * 120.00740 * 359.72857 * 10 9 8 34 34 H 1.08998 * 109.47224 * 299.99701 * 13 11 10 35 35 H 1.09002 * 109.47054 * 60.00213 * 13 11 10 36 36 H 0.97000 * 119.99868 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.1588 1.1465 0.0000 4 6 3.4765 1.1950 -0.0062 5 6 4.2267 0.0341 -0.0067 6 6 3.5767 -1.1903 -0.0013 7 6 2.1900 -1.2012 0.0056 8 6 1.4373 -2.5068 0.0122 9 6 1.0670 -2.8894 -1.4221 10 7 0.3349 -4.1583 -1.4156 11 6 -0.0948 -4.6944 -2.5751 12 8 0.1204 -4.1238 -3.6235 13 6 -0.8426 -6.0027 -2.5690 14 16 -1.2820 -6.4546 -4.2657 15 6 -2.1200 -7.9760 -3.9700 16 1 -2.2251 -8.3474 -2.9613 17 6 -2.6450 -8.6971 -5.0333 18 7 -2.5174 -8.2442 -6.2626 19 14 -3.5341 -10.3099 -4.7197 20 1 -4.7043 -10.0668 -3.8384 21 1 -3.9971 -10.8791 -6.0108 22 1 -2.6081 -11.2655 -4.0606 23 1 -0.3633 0.0048 1.0277 24 1 -0.3633 0.8875 -0.5180 25 1 -0.3633 -0.8924 -0.5097 26 1 3.9753 2.1529 -0.0104 27 1 5.3057 0.0803 -0.0122 28 1 4.1368 -2.1137 -0.0020 29 1 0.5292 -2.3997 0.6056 30 1 2.0646 -3.2857 0.4456 31 1 1.9752 -2.9966 -2.0155 32 1 0.4397 -2.1105 -1.8556 33 1 0.1630 -4.6148 -0.5772 34 1 -0.2117 -6.7798 -2.1375 35 1 -1.7503 -5.8996 -1.9742 36 1 -2.8840 -8.7484 -7.0057 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890836673.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:08:20 Heat of formation + Delta-G solvation = -41.999882 kcal Electronic energy + Delta-G solvation = -18202.620030 eV Core-core repulsion = 15197.362824 eV Total energy + Delta-G solvation = -3005.257206 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.38573 -40.52455 -36.81767 -34.58050 -34.41402 -33.89581 -31.48697 -29.59088 -28.31925 -27.63219 -24.91836 -23.30313 -22.32593 -21.73321 -19.82526 -17.90594 -17.75152 -17.33415 -17.21456 -16.86710 -16.63290 -16.01792 -15.55472 -15.34859 -15.19438 -14.69709 -14.43629 -14.03174 -13.97291 -13.59397 -13.40668 -13.16058 -13.15319 -12.95734 -12.85902 -12.67535 -12.59601 -12.13395 -11.73932 -11.11858 -11.00490 -10.67677 -10.38120 -10.26309 -10.13000 -9.72682 -8.65988 -8.33493 -6.11784 0.12883 0.34578 1.28195 1.45001 1.48213 1.57793 1.61992 2.26324 2.30478 2.81531 3.00610 3.32852 3.43184 3.75226 3.85322 3.96345 3.97629 4.09188 4.13040 4.28722 4.35531 4.48702 4.53526 4.63275 4.66889 4.73266 4.79104 4.93475 5.00410 5.21082 5.25911 5.36631 5.41709 5.42866 5.81434 6.20723 6.52435 7.05765 7.07684 7.26049 8.75498 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.049393 B = 0.002616 C = 0.002610 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.742481 B =10701.550488 C =10723.682089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.114 3.886 3 N -0.518 5.518 4 C 0.085 3.915 5 C -0.178 4.178 6 C -0.074 4.074 7 C -0.141 4.141 8 C -0.074 4.074 9 C 0.127 3.873 10 N -0.710 5.710 11 C 0.532 3.468 12 O -0.569 6.569 13 C -0.128 4.128 14 S -0.156 6.156 15 C -0.546 4.546 16 H 0.084 0.916 17 C 0.012 3.988 18 N -0.912 5.912 19 Si 0.999 3.001 20 H -0.262 1.262 21 H -0.280 1.280 22 H -0.261 1.261 23 H 0.093 0.907 24 H 0.069 0.931 25 H 0.082 0.918 26 H 0.175 0.825 27 H 0.162 0.838 28 H 0.157 0.843 29 H 0.101 0.899 30 H 0.104 0.896 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.420 0.580 34 H 0.112 0.888 35 H 0.112 0.888 36 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.193 12.987 19.674 26.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.023 4.023 3 N -0.228 5.228 4 C -0.072 4.072 5 C -0.197 4.197 6 C -0.099 4.099 7 C -0.144 4.144 8 C -0.112 4.112 9 C 0.004 3.996 10 N -0.365 5.365 11 C 0.318 3.682 12 O -0.447 6.447 13 C -0.280 4.280 14 S 0.071 5.929 15 C -0.693 4.693 16 H 0.103 0.897 17 C -0.193 4.193 18 N -0.549 5.549 19 Si 0.820 3.180 20 H -0.186 1.186 21 H -0.205 1.205 22 H -0.186 1.186 23 H 0.111 0.889 24 H 0.088 0.912 25 H 0.101 0.899 26 H 0.192 0.808 27 H 0.180 0.820 28 H 0.175 0.825 29 H 0.120 0.880 30 H 0.123 0.877 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.257 0.743 34 H 0.130 0.870 35 H 0.131 0.869 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 11.046 14.715 17.781 25.587 hybrid contribution -0.241 -2.196 1.075 2.456 sum 10.805 12.519 18.856 25.080 Atomic orbital electron populations 1.20862 0.88264 1.03710 1.03945 1.21491 0.97776 0.88185 0.94879 1.67535 1.11396 1.30017 1.13831 1.23211 0.89095 1.00121 0.94776 1.22456 1.02925 0.92835 1.01502 1.21919 0.93605 0.99861 0.94542 1.20622 0.94988 0.95713 1.03042 1.20664 1.01773 0.93961 0.94838 1.21299 0.95759 0.84781 0.97807 1.45686 1.57785 1.24275 1.08707 1.20112 0.78386 0.85813 0.83878 1.90703 1.57603 1.63276 1.33127 1.23370 1.03742 0.97694 1.03158 1.85625 1.73160 1.28412 1.05721 1.23175 1.41810 1.07641 0.96702 0.89745 1.26148 0.96547 1.02580 0.93999 1.70183 1.44611 1.40382 0.99715 0.84998 0.78533 0.76617 0.77807 1.18606 1.20542 1.18578 0.88887 0.91200 0.89934 0.80807 0.82029 0.82540 0.88035 0.87713 0.92796 0.92735 0.74269 0.86951 0.86942 0.92025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.83 9.39 71.24 0.67 -1.16 16 2 C 0.11 2.25 6.78 42.54 0.29 2.53 16 3 N -0.52 -11.27 10.27 -183.88 -1.89 -13.16 16 4 C 0.08 1.39 11.18 84.68 0.95 2.34 16 5 C -0.18 -2.34 10.11 22.36 0.23 -2.12 16 6 C -0.07 -1.03 9.84 22.47 0.22 -0.81 16 7 C -0.14 -2.31 5.15 -19.77 -0.10 -2.41 16 8 C -0.07 -0.95 4.77 29.85 0.14 -0.81 16 9 C 0.13 2.67 5.46 86.38 0.47 3.14 16 10 N -0.71 -16.28 5.56 -463.05 -2.57 -18.86 16 11 C 0.53 19.05 7.85 87.65 0.69 19.74 16 12 O -0.57 -26.36 15.86 -3.04 -0.05 -26.41 16 13 C -0.13 -4.92 6.16 71.23 0.44 -4.48 16 14 S -0.16 -8.63 20.57 -56.49 -1.16 -9.80 16 15 C -0.55 -30.86 9.50 67.95 0.65 -30.22 16 16 H 0.08 4.39 7.80 -2.91 -0.02 4.36 16 17 C 0.01 0.67 5.49 84.86 0.47 1.14 16 18 N -0.91 -56.10 13.22 21.65 0.29 -55.82 16 19 Si 1.00 43.22 29.55 68.60 2.03 45.24 16 20 H -0.26 -10.70 7.11 99.48 0.71 -9.99 16 21 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 22 H -0.26 -10.67 7.11 99.48 0.71 -9.97 16 23 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 24 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 25 H 0.08 1.30 5.40 -2.39 -0.01 1.29 16 26 H 0.17 1.90 8.06 -2.91 -0.02 1.87 16 27 H 0.16 1.14 8.06 -2.91 -0.02 1.12 16 28 H 0.16 1.44 8.06 -2.91 -0.02 1.41 16 29 H 0.10 1.01 7.02 -2.38 -0.02 1.00 16 30 H 0.10 0.92 8.06 -2.39 -0.02 0.90 16 31 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 32 H 0.05 1.34 6.88 -2.38 -0.02 1.32 16 33 H 0.42 6.22 8.47 -92.71 -0.79 5.43 16 34 H 0.11 3.80 8.14 -2.40 -0.02 3.79 16 35 H 0.11 3.81 8.14 -2.39 -0.02 3.79 16 36 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -80.36 324.88 2.05 -78.31 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: 0.31 Total: 13.60 kcal Atomic # 6 Polarization: -18.21 SS G_CDS: 5.10 Total: -13.11 kcal Atomic # 7 Polarization: -83.66 SS G_CDS: -4.18 Total: -87.84 kcal Atomic # 8 Polarization: -26.36 SS G_CDS: -0.05 Total: -26.41 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.24 kcal Atomic # 16 Polarization: -8.63 SS G_CDS: -1.16 Total: -9.80 kcal Total: -80.36 2.05 -78.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890836673.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.309 kcal (2) G-P(sol) polarization free energy of solvation -80.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds