Wall clock time and date at job start Tue Mar 31 2020 01:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.46977 * 2 1 4 4 H 1.08995 * 109.46900 * 54.11721 * 3 2 1 5 5 S 1.81398 * 109.47101 * 294.11338 * 3 2 1 6 6 C 1.81393 * 102.99882 * 171.36791 * 5 3 2 7 7 C 1.50703 * 109.46845 * 174.11599 * 3 2 1 8 8 O 1.21265 * 119.99880 * 100.00166 * 7 3 2 9 9 N 1.34777 * 119.99757 * 279.99739 * 7 3 2 10 10 C 1.37211 * 120.00454 * 5.30948 * 9 7 3 11 11 H 1.08004 * 119.99526 * 5.96013 * 10 9 7 12 12 C 1.38893 * 120.00525 * 185.96364 * 10 9 7 13 13 N 1.31419 * 119.99755 * 6.35332 * 12 10 9 14 14 Si 1.86800 * 120.00239 * 186.34838 * 12 10 9 15 15 H 1.48496 * 109.46891 * 60.00167 * 14 12 10 16 16 H 1.48502 * 109.47038 * 179.97438 * 14 12 10 17 17 H 1.48495 * 109.47149 * 300.00289 * 14 12 10 18 18 C 1.39429 * 119.99783 * 185.30877 * 9 7 3 19 19 C 1.39068 * 119.69783 * 84.35046 * 18 9 7 20 20 C 1.38382 * 119.09950 * 179.76721 * 19 18 9 21 21 C 1.38822 * 118.49100 * 0.51695 * 20 19 18 22 22 C 1.38152 * 119.31056 * 359.46229 * 21 20 19 23 23 N 1.31881 * 120.85353 * 0.29409 * 22 21 20 24 24 H 1.08998 * 109.47012 * 185.15955 * 1 2 3 25 25 H 1.09006 * 109.47252 * 305.15089 * 1 2 3 26 26 H 1.09001 * 109.47275 * 65.15389 * 1 2 3 27 27 H 1.08997 * 109.47115 * 240.00363 * 2 1 3 28 28 H 1.08997 * 109.47337 * 119.99657 * 2 1 3 29 29 H 1.08998 * 109.47540 * 65.02851 * 6 5 3 30 30 H 1.08998 * 109.47061 * 185.02777 * 6 5 3 31 31 H 1.09004 * 109.47291 * 305.02581 * 6 5 3 32 32 H 0.96997 * 119.99586 * 180.02562 * 13 12 10 33 33 H 1.08004 * 120.44617 * 0.02562 * 19 18 9 34 34 H 1.07998 * 120.75253 * 180.27851 * 20 19 18 35 35 H 1.07999 * 120.34415 * 179.73542 * 21 20 19 36 36 H 1.07993 * 119.57327 * 180.27745 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5931 1.9859 0.8326 5 16 1.5827 2.2456 -1.5610 6 6 2.0251 3.9808 -1.2721 7 6 3.5399 1.4450 0.1457 8 8 4.2436 1.5930 -0.8308 9 7 4.0991 1.2829 1.3612 10 6 3.3092 1.0071 2.4486 11 1 2.2529 0.8247 2.3163 12 6 3.8678 0.9625 3.7195 13 7 5.1237 1.3060 3.8976 14 14 2.8339 0.4145 5.1756 15 1 2.3520 -0.9713 4.9468 16 1 3.6578 0.4540 6.4105 17 1 1.6703 1.3245 5.3269 18 6 5.4805 1.3954 1.5136 19 6 6.0548 2.6504 1.6845 20 6 7.4265 2.7473 1.8395 21 6 8.1805 1.5822 1.8072 22 6 7.5432 0.3687 1.6340 23 7 6.2334 0.3066 1.4939 24 1 -0.3633 -1.0235 0.0924 25 1 -0.3634 0.5917 0.8403 26 1 -0.3634 0.4318 -0.9325 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.1048 4.0649 -1.1488 30 1 1.7086 4.5831 -2.1237 31 1 1.5276 4.3373 -0.3701 32 1 5.5139 1.2746 4.7850 33 1 5.4382 3.5369 1.7002 34 1 7.9001 3.7079 1.9785 35 1 9.2538 1.6235 1.9208 36 1 8.1252 -0.5407 1.6127 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892470129.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:20 Heat of formation + Delta-G solvation = 14.474994 kcal Electronic energy + Delta-G solvation = -20432.535862 eV Core-core repulsion = 17429.727590 eV Total energy + Delta-G solvation = -3002.808272 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = -0.05 seconds Orbital eigenvalues (eV) -39.75369 -38.02629 -34.94585 -34.10404 -31.78285 -31.30058 -29.53291 -28.59318 -27.17358 -25.14218 -22.55836 -22.44835 -21.40512 -19.46031 -18.28732 -16.64200 -15.77260 -15.43973 -15.29773 -14.82977 -14.57559 -14.50229 -13.82677 -13.66102 -13.22045 -13.07830 -12.90030 -12.43009 -12.28462 -12.12913 -11.81908 -11.71866 -11.36903 -11.25923 -11.16454 -10.78020 -10.73850 -10.54670 -10.35385 -9.82925 -9.48965 -8.85205 -8.73107 -8.50546 -8.04245 -7.95167 -7.09181 -6.36213 -4.14549 2.13495 2.27731 2.41948 2.94638 3.05077 3.11462 3.12578 3.58009 3.91832 4.35922 4.87645 5.00623 5.31256 5.41800 5.49394 5.55032 5.57769 5.65903 5.68352 5.89726 5.92126 6.00163 6.10442 6.14946 6.23576 6.34139 6.43826 6.48859 6.66470 6.68336 7.07856 7.10061 7.19562 7.36232 7.73849 8.25766 8.86816 9.10324 9.28158 9.62180 10.50127 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.014361 B = 0.008533 C = 0.006202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.214415 B = 3280.467951 C = 4513.608350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.101 4.101 3 C -0.052 4.052 4 H 0.106 0.894 5 S -0.228 6.228 6 C -0.122 4.122 7 C 0.470 3.530 8 O -0.570 6.570 9 N -0.405 5.405 10 C -0.340 4.340 11 H 0.110 0.890 12 C 0.040 3.960 13 N -0.861 5.861 14 Si 0.931 3.069 15 H -0.270 1.270 16 H -0.282 1.282 17 H -0.271 1.271 18 C 0.464 3.536 19 C -0.130 4.130 20 C -0.076 4.076 21 C -0.207 4.207 22 C 0.110 3.890 23 N -0.490 5.490 24 H 0.053 0.947 25 H 0.055 0.945 26 H 0.061 0.939 27 H 0.069 0.931 28 H 0.092 0.908 29 H 0.078 0.922 30 H 0.093 0.907 31 H 0.072 0.928 32 H 0.275 0.725 33 H 0.111 0.889 34 H 0.116 0.884 35 H 0.115 0.885 36 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.110 2.426 -1.784 4.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.140 4.140 3 C -0.184 4.184 4 H 0.124 0.876 5 S -0.001 6.001 6 C -0.291 4.291 7 C 0.255 3.745 8 O -0.453 6.453 9 N -0.124 5.124 10 C -0.466 4.466 11 H 0.128 0.872 12 C -0.166 4.166 13 N -0.498 5.498 14 Si 0.757 3.243 15 H -0.196 1.196 16 H -0.208 1.208 17 H -0.197 1.197 18 C 0.238 3.762 19 C -0.153 4.153 20 C -0.103 4.103 21 C -0.228 4.228 22 C -0.048 4.048 23 N -0.203 5.203 24 H 0.072 0.928 25 H 0.074 0.926 26 H 0.080 0.920 27 H 0.087 0.913 28 H 0.110 0.890 29 H 0.097 0.903 30 H 0.112 0.888 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.129 0.871 34 H 0.134 0.866 35 H 0.133 0.867 36 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.485 1.277 -3.107 4.840 hybrid contribution 0.665 1.099 2.435 2.753 sum -2.820 2.376 -0.672 3.748 Atomic orbital electron populations 1.21812 0.95043 1.01364 1.02350 1.21303 0.96131 0.92581 1.03953 1.23348 0.96637 1.01045 0.97393 0.87624 1.86160 1.81374 1.06331 1.26265 1.23332 1.05340 0.95615 1.04834 1.19903 0.89577 0.82433 0.82539 1.90629 1.62843 1.54457 1.37335 1.41170 1.02374 1.61556 1.07296 1.19753 0.93153 1.49709 0.84001 0.87206 1.25262 0.96312 0.95920 0.99096 1.69556 1.12222 1.44259 1.23769 0.85918 0.79132 0.79516 0.79770 1.19551 1.20760 1.19657 1.17429 0.84076 0.87833 0.86878 1.21487 0.94840 0.97722 1.01204 1.21043 0.93508 0.97783 0.97929 1.21662 0.99740 0.94147 1.07205 1.22101 0.90001 0.96442 0.96218 1.67151 1.06217 1.33145 1.13763 0.92765 0.92555 0.91952 0.91271 0.88998 0.90280 0.88804 0.90945 0.91310 0.87083 0.86633 0.86694 0.84714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.09 9.66 37.15 0.36 -1.73 16 2 C -0.10 -1.78 5.04 -26.73 -0.13 -1.91 16 3 C -0.05 -1.02 1.74 -27.88 -0.05 -1.07 16 4 H 0.11 1.99 7.11 -51.93 -0.37 1.63 16 5 S -0.23 -4.09 19.97 -107.50 -2.15 -6.24 16 6 C -0.12 -1.90 10.63 101.05 1.07 -0.83 16 7 C 0.47 11.23 6.65 -10.98 -0.07 11.15 16 8 O -0.57 -15.13 16.02 5.57 0.09 -15.04 16 9 N -0.41 -10.19 2.74 -60.71 -0.17 -10.36 16 10 C -0.34 -8.29 8.58 -14.90 -0.13 -8.41 16 11 H 0.11 2.44 5.18 -52.48 -0.27 2.17 16 12 C 0.04 0.97 5.41 -17.49 -0.09 0.88 16 13 N -0.86 -22.02 9.81 55.49 0.54 -21.47 16 14 Si 0.93 19.10 29.56 -169.99 -5.02 14.07 16 15 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 16 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 17 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 18 C 0.46 11.84 2.97 -154.64 -0.46 11.38 16 19 C -0.13 -3.04 8.94 -39.22 -0.35 -3.39 16 20 C -0.08 -1.53 10.17 -39.31 -0.40 -1.92 16 21 C -0.21 -3.96 10.11 -39.40 -0.40 -4.35 16 22 C 0.11 2.35 11.18 -17.56 -0.20 2.16 16 23 N -0.49 -12.46 10.17 -12.34 -0.13 -12.58 16 24 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 25 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.06 0.86 7.36 -51.93 -0.38 0.48 16 27 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 28 H 0.09 1.72 6.59 -51.93 -0.34 1.38 16 29 H 0.08 1.38 8.14 -51.93 -0.42 0.96 16 30 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 31 H 0.07 1.02 8.14 -51.92 -0.42 0.60 16 32 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 33 H 0.11 2.52 8.06 -52.48 -0.42 2.10 16 34 H 0.12 1.90 8.06 -52.49 -0.42 1.47 16 35 H 0.12 1.76 8.06 -52.49 -0.42 1.33 16 36 H 0.14 2.41 8.06 -52.49 -0.42 1.99 16 LS Contribution 316.28 15.07 4.77 4.77 Total: -1.00 -30.03 316.28 -7.64 -37.67 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -4.73 Total: 7.24 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: -0.85 Total: 1.95 kcal Atomic # 7 Polarization: -44.66 SS G_CDS: 0.25 Total: -44.41 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: 0.09 Total: -15.04 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.02 Total: 14.07 kcal Atomic # 16 Polarization: -4.09 SS G_CDS: -2.15 Total: -6.24 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -30.03 -7.64 -37.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892470129.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.143 kcal (2) G-P(sol) polarization free energy of solvation -30.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.04 seconds