Wall clock time and date at job start Tue Mar 31 2020 01:59:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53008 * 109.46977 * 2 1 4 4 H 1.08995 * 109.46900 * 54.11721 * 3 2 1 5 5 S 1.81398 * 109.47101 * 294.11338 * 3 2 1 6 6 C 1.81393 * 102.99882 * 171.36791 * 5 3 2 7 7 C 1.50703 * 109.46845 * 174.11599 * 3 2 1 8 8 O 1.21265 * 119.99880 * 100.00166 * 7 3 2 9 9 N 1.34777 * 119.99757 * 279.99739 * 7 3 2 10 10 C 1.37211 * 120.00454 * 5.30948 * 9 7 3 11 11 H 1.08004 * 119.99526 * 5.96013 * 10 9 7 12 12 C 1.38893 * 120.00525 * 185.96364 * 10 9 7 13 13 N 1.31419 * 119.99755 * 6.35332 * 12 10 9 14 14 Si 1.86800 * 120.00239 * 186.34838 * 12 10 9 15 15 H 1.48496 * 109.46891 * 60.00167 * 14 12 10 16 16 H 1.48502 * 109.47038 * 179.97438 * 14 12 10 17 17 H 1.48495 * 109.47149 * 300.00289 * 14 12 10 18 18 C 1.39429 * 119.99783 * 185.30877 * 9 7 3 19 19 C 1.39068 * 119.69783 * 84.35046 * 18 9 7 20 20 C 1.38382 * 119.09950 * 179.76721 * 19 18 9 21 21 C 1.38822 * 118.49100 * 0.51695 * 20 19 18 22 22 C 1.38152 * 119.31056 * 359.46229 * 21 20 19 23 23 N 1.31881 * 120.85353 * 0.29409 * 22 21 20 24 24 H 1.08998 * 109.47012 * 185.15955 * 1 2 3 25 25 H 1.09006 * 109.47252 * 305.15089 * 1 2 3 26 26 H 1.09001 * 109.47275 * 65.15389 * 1 2 3 27 27 H 1.08997 * 109.47115 * 240.00363 * 2 1 3 28 28 H 1.08997 * 109.47337 * 119.99657 * 2 1 3 29 29 H 1.08998 * 109.47540 * 65.02851 * 6 5 3 30 30 H 1.08998 * 109.47061 * 185.02777 * 6 5 3 31 31 H 1.09004 * 109.47291 * 305.02581 * 6 5 3 32 32 H 0.96997 * 119.99586 * 180.02562 * 13 12 10 33 33 H 1.08004 * 120.44617 * 0.02562 * 19 18 9 34 34 H 1.07998 * 120.75253 * 180.27851 * 20 19 18 35 35 H 1.07999 * 120.34415 * 179.73542 * 21 20 19 36 36 H 1.07993 * 119.57327 * 180.27745 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5931 1.9859 0.8326 5 16 1.5827 2.2456 -1.5610 6 6 2.0251 3.9808 -1.2721 7 6 3.5399 1.4450 0.1457 8 8 4.2436 1.5930 -0.8308 9 7 4.0991 1.2829 1.3612 10 6 3.3092 1.0071 2.4486 11 1 2.2529 0.8247 2.3163 12 6 3.8678 0.9625 3.7195 13 7 5.1237 1.3060 3.8976 14 14 2.8339 0.4145 5.1756 15 1 2.3520 -0.9713 4.9468 16 1 3.6578 0.4540 6.4105 17 1 1.6703 1.3245 5.3269 18 6 5.4805 1.3954 1.5136 19 6 6.0548 2.6504 1.6845 20 6 7.4265 2.7473 1.8395 21 6 8.1805 1.5822 1.8072 22 6 7.5432 0.3687 1.6340 23 7 6.2334 0.3066 1.4939 24 1 -0.3633 -1.0235 0.0924 25 1 -0.3634 0.5917 0.8403 26 1 -0.3634 0.4318 -0.9325 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 3.1048 4.0649 -1.1488 30 1 1.7086 4.5831 -2.1237 31 1 1.5276 4.3373 -0.3701 32 1 5.5139 1.2746 4.7850 33 1 5.4382 3.5369 1.7002 34 1 7.9001 3.7079 1.9785 35 1 9.2538 1.6235 1.9208 36 1 8.1252 -0.5407 1.6127 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892470129.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:59:19 Heat of formation + Delta-G solvation = -2.713889 kcal Electronic energy + Delta-G solvation = -20433.281228 eV Core-core repulsion = 17429.727590 eV Total energy + Delta-G solvation = -3003.553638 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.51090 -39.75517 -36.78742 -35.55576 -33.62296 -32.99484 -31.16526 -29.91015 -28.60178 -26.98393 -24.20005 -24.11943 -22.83659 -21.24578 -20.02584 -18.37672 -17.38005 -17.07063 -16.96328 -16.52993 -16.20533 -16.02049 -15.39810 -15.31351 -14.84973 -14.41807 -14.28574 -14.13711 -13.80711 -13.64037 -13.35922 -13.06974 -12.92340 -12.90790 -12.72712 -12.43826 -12.18460 -12.06964 -11.82372 -11.59926 -10.94943 -10.63924 -10.47081 -10.29730 -9.80945 -9.68951 -8.52093 -8.16819 -6.02896 0.58756 0.70844 0.77548 1.37612 1.43636 1.52477 1.57637 1.82912 2.21712 2.65982 3.10360 3.26397 3.84067 3.89101 4.04841 4.12613 4.18981 4.29650 4.33638 4.49504 4.50022 4.55552 4.57999 4.76074 4.85091 4.89675 5.03917 5.09941 5.19863 5.32090 5.43104 5.45880 5.47266 5.64092 6.03483 6.43483 7.01017 7.32394 7.52710 7.79972 8.66191 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.014361 B = 0.008533 C = 0.006202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.214415 B = 3280.467951 C = 4513.608350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.097 4.097 3 C -0.048 4.048 4 H 0.111 0.889 5 S -0.233 6.233 6 C -0.117 4.117 7 C 0.459 3.541 8 O -0.609 6.609 9 N -0.415 5.415 10 C -0.355 4.355 11 H 0.125 0.875 12 C -0.004 4.004 13 N -0.881 5.881 14 Si 0.994 3.006 15 H -0.269 1.269 16 H -0.288 1.288 17 H -0.256 1.256 18 C 0.434 3.566 19 C -0.157 4.157 20 C -0.072 4.072 21 C -0.194 4.194 22 C 0.093 3.907 23 N -0.533 5.533 24 H 0.073 0.927 25 H 0.065 0.935 26 H 0.066 0.934 27 H 0.055 0.945 28 H 0.076 0.924 29 H 0.053 0.947 30 H 0.124 0.876 31 H 0.087 0.913 32 H 0.269 0.731 33 H 0.102 0.898 34 H 0.154 0.846 35 H 0.163 0.837 36 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.514 2.811 -1.126 4.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.136 4.136 3 C -0.179 4.179 4 H 0.129 0.871 5 S -0.006 6.006 6 C -0.286 4.286 7 C 0.246 3.754 8 O -0.494 6.494 9 N -0.133 5.133 10 C -0.481 4.481 11 H 0.142 0.858 12 C -0.207 4.207 13 N -0.519 5.519 14 Si 0.817 3.183 15 H -0.194 1.194 16 H -0.213 1.213 17 H -0.180 1.180 18 C 0.209 3.791 19 C -0.179 4.179 20 C -0.098 4.098 21 C -0.214 4.214 22 C -0.065 4.065 23 N -0.246 5.246 24 H 0.092 0.908 25 H 0.084 0.916 26 H 0.085 0.915 27 H 0.074 0.926 28 H 0.094 0.906 29 H 0.072 0.928 30 H 0.142 0.858 31 H 0.106 0.894 32 H 0.080 0.920 33 H 0.120 0.880 34 H 0.172 0.828 35 H 0.180 0.820 36 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -3.902 1.668 -2.450 4.900 hybrid contribution 0.933 1.006 2.185 2.581 sum -2.969 2.674 -0.265 4.004 Atomic orbital electron populations 1.21751 0.91879 1.02917 1.03002 1.21287 0.98744 0.91028 1.02505 1.23305 0.93507 1.02546 0.98578 0.87128 1.86096 1.80715 1.08112 1.25658 1.23407 1.03848 0.94298 1.07015 1.20662 0.91310 0.81598 0.81847 1.90577 1.64245 1.56238 1.38327 1.41466 1.02879 1.61139 1.07807 1.20179 0.93941 1.49800 0.84205 0.85799 1.26137 0.97396 0.95784 1.01377 1.69759 1.13553 1.44901 1.23640 0.84952 0.77936 0.79218 0.76164 1.19381 1.21334 1.18027 1.17738 0.84412 0.88652 0.88340 1.21591 0.96578 0.96778 1.03000 1.21536 0.92294 1.00040 0.95972 1.22130 1.01964 0.92756 1.04585 1.22756 0.89213 0.98811 0.95682 1.67105 1.08207 1.33840 1.15476 0.90834 0.91577 0.91504 0.92606 0.90560 0.92769 0.85783 0.89374 0.91971 0.88001 0.82808 0.81977 0.81876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.66 9.66 71.98 0.70 -2.96 16 2 C -0.10 -3.41 5.04 30.60 0.15 -3.26 16 3 C -0.05 -1.87 1.74 29.85 0.05 -1.82 16 4 H 0.11 4.16 7.11 -2.39 -0.02 4.15 16 5 S -0.23 -8.23 19.97 -56.49 -1.13 -9.36 16 6 C -0.12 -3.54 10.63 113.37 1.20 -2.34 16 7 C 0.46 22.63 6.65 87.66 0.58 23.21 16 8 O -0.61 -33.58 16.02 -2.98 -0.05 -33.63 16 9 N -0.41 -21.51 2.74 -464.37 -1.27 -22.78 16 10 C -0.36 -17.59 8.58 84.01 0.72 -16.87 16 11 H 0.12 5.54 5.18 -2.91 -0.02 5.52 16 12 C 0.00 -0.20 5.41 84.91 0.46 0.26 16 13 N -0.88 -45.60 9.81 21.65 0.21 -45.39 16 14 Si 0.99 38.89 29.56 68.60 2.03 40.91 16 15 H -0.27 -10.36 7.11 99.48 0.71 -9.65 16 16 H -0.29 -11.40 7.11 99.48 0.71 -10.69 16 17 H -0.26 -9.31 7.11 99.48 0.71 -8.60 16 18 C 0.43 22.71 2.97 132.90 0.40 23.11 16 19 C -0.16 -7.46 8.94 22.50 0.20 -7.26 16 20 C -0.07 -2.79 10.17 22.44 0.23 -2.56 16 21 C -0.19 -6.99 10.11 22.39 0.23 -6.76 16 22 C 0.09 3.89 11.18 84.66 0.95 4.83 16 23 N -0.53 -27.59 10.17 -192.95 -1.96 -29.55 16 24 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 25 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 26 H 0.07 1.72 7.36 -2.39 -0.02 1.70 16 27 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.08 2.90 6.59 -2.39 -0.02 2.89 16 29 H 0.05 1.92 8.14 -2.39 -0.02 1.90 16 30 H 0.12 2.95 8.14 -2.39 -0.02 2.93 16 31 H 0.09 2.37 8.14 -2.39 -0.02 2.35 16 32 H 0.27 13.54 8.31 -92.71 -0.77 12.77 16 33 H 0.10 4.82 8.06 -2.91 -0.02 4.80 16 34 H 0.15 4.61 8.06 -2.91 -0.02 4.58 16 35 H 0.16 4.23 8.06 -2.91 -0.02 4.21 16 36 H 0.16 5.60 8.06 -2.91 -0.02 5.58 16 Total: -1.00 -67.25 316.28 4.77 -62.48 By element: Atomic # 1 Polarization: 28.66 SS G_CDS: 1.07 Total: 29.74 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: 5.87 Total: 7.57 kcal Atomic # 7 Polarization: -94.70 SS G_CDS: -3.02 Total: -97.72 kcal Atomic # 8 Polarization: -33.58 SS G_CDS: -0.05 Total: -33.63 kcal Atomic # 14 Polarization: 38.89 SS G_CDS: 2.03 Total: 40.91 kcal Atomic # 16 Polarization: -8.23 SS G_CDS: -1.13 Total: -9.36 kcal Total: -67.25 4.77 -62.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892470129.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.764 kcal (2) G-P(sol) polarization free energy of solvation -67.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds