Wall clock time and date at job start Tue Mar 31 2020 01:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47133 * 2 1 4 4 H 1.09003 * 109.47613 * 305.00422 * 3 2 1 5 5 N 1.46500 * 109.47084 * 65.00364 * 3 2 1 6 6 C 1.34776 * 120.00174 * 275.00117 * 5 3 2 7 7 O 1.21287 * 119.99854 * 359.97438 * 6 5 3 8 8 C 1.50699 * 120.00021 * 179.97438 * 6 5 3 9 9 S 1.81003 * 109.46751 * 179.97438 * 8 6 5 10 10 C 1.76204 * 99.99678 * 179.97438 * 9 8 6 11 11 H 1.07996 * 120.00372 * 359.97438 * 10 9 8 12 12 C 1.38800 * 119.99956 * 180.02562 * 10 9 8 13 13 N 1.31639 * 119.99893 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 120.00186 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47138 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.47170 * 119.99872 * 14 12 10 17 17 H 1.48498 * 109.47526 * 239.99854 * 14 12 10 18 18 C 1.50703 * 109.47483 * 185.00374 * 3 2 1 19 19 C 1.38225 * 119.61869 * 124.99916 * 18 3 2 20 20 C 1.38635 * 119.15939 * 179.97438 * 19 18 3 21 21 C 1.38675 * 118.41956 * 0.02562 * 20 19 18 22 22 C 1.38186 * 119.16332 * 0.27967 * 21 20 19 23 23 N 1.31860 * 119.61591 * 304.98272 * 18 3 2 24 24 H 1.08998 * 109.47513 * 59.99950 * 1 2 3 25 25 H 1.08997 * 109.46924 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46691 * 299.99514 * 1 2 3 27 27 H 1.09002 * 109.47179 * 240.00481 * 2 1 3 28 28 H 1.08997 * 109.47514 * 120.00603 * 2 1 3 29 29 H 0.97004 * 119.99960 * 94.99612 * 5 3 2 30 30 H 1.08999 * 109.47163 * 299.99452 * 8 6 5 31 31 H 1.08992 * 109.47138 * 60.00279 * 8 6 5 32 32 H 0.97003 * 119.99651 * 180.02562 * 13 12 10 33 33 H 1.07997 * 120.42090 * 359.96022 * 19 18 3 34 34 H 1.07998 * 120.78847 * 180.02562 * 20 19 18 35 35 H 1.08002 * 120.41399 * 179.97438 * 21 20 19 36 36 H 1.07999 * 119.61418 * 179.70216 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 7 1.6525 2.0974 1.2518 6 6 0.4352 2.6643 1.3671 7 8 -0.3393 2.6326 0.4343 8 6 0.0364 3.3375 2.6551 9 16 -1.6420 3.9963 2.4968 10 6 -1.8442 4.7059 4.0970 11 1 -1.0446 4.6438 4.8202 12 6 -3.0315 5.3439 4.4282 13 7 -4.0064 5.4193 3.5468 14 14 -3.2462 6.0955 6.1248 15 1 -2.0128 5.8775 6.9225 16 1 -3.4981 7.5530 5.9922 17 1 -4.3981 5.4543 6.8082 18 6 3.5419 1.4444 -0.1239 19 6 4.1425 2.1628 -1.1406 20 6 5.5249 2.1583 -1.2454 21 6 6.2546 1.4277 -0.3198 22 6 5.5842 0.7286 0.6657 23 7 4.2678 0.7609 0.7390 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 2.2720 2.1230 1.9978 30 1 0.0674 2.6128 3.4686 31 1 0.7277 4.1528 2.8681 32 1 -4.8360 5.8655 3.7783 33 1 3.5426 2.7203 -1.8446 34 1 6.0217 2.7107 -2.0293 35 1 7.3331 1.4014 -0.3716 36 1 6.1450 0.1533 1.3875 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000911133111.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:57:44 Heat of formation + Delta-G solvation = -9.995784 kcal Electronic energy + Delta-G solvation = -18869.299673 eV Core-core repulsion = 15865.430268 eV Total energy + Delta-G solvation = -3003.869404 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.69995 -39.18565 -35.68958 -32.69670 -32.41012 -32.31130 -31.42705 -29.04002 -26.32161 -25.42447 -23.88939 -22.76083 -21.15358 -20.10181 -17.97857 -17.20934 -16.76873 -16.27764 -15.92168 -15.32068 -15.18688 -14.78517 -14.20359 -14.03703 -13.82886 -13.46333 -13.39714 -13.10917 -12.58817 -12.44164 -12.25682 -11.75042 -11.43567 -11.19029 -11.05325 -10.98696 -10.74765 -10.65982 -10.17897 -9.81872 -9.73464 -9.47495 -9.17537 -9.05405 -8.75976 -8.20541 -6.46914 -6.19903 -3.89707 0.76095 0.98284 3.05421 3.13133 3.23096 3.29267 3.33671 3.52332 3.85457 3.95780 4.22545 4.39186 4.55483 4.77689 4.82795 5.07444 5.14032 5.15690 5.24383 5.27025 5.41684 5.50648 5.67611 5.77450 5.86248 5.87628 5.92748 6.03042 6.14558 6.19169 6.32916 6.41864 6.66965 6.72890 7.62240 7.69541 7.78935 8.37702 8.66369 9.25805 10.87533 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.028656 B = 0.003510 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.889187 B = 7975.381965 C = 8446.025302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.123 4.123 3 C 0.200 3.800 4 H 0.101 0.899 5 N -0.726 5.726 6 C 0.534 3.466 7 O -0.512 6.512 8 C -0.153 4.153 9 S -0.058 6.058 10 C -0.535 4.535 11 H 0.073 0.927 12 C 0.073 3.927 13 N -0.868 5.868 14 Si 0.918 3.082 15 H -0.272 1.272 16 H -0.280 1.280 17 H -0.280 1.280 18 C 0.121 3.879 19 C -0.156 4.156 20 C -0.075 4.075 21 C -0.174 4.174 22 C 0.099 3.901 23 N -0.471 5.471 24 H 0.060 0.940 25 H 0.045 0.955 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.401 0.599 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.267 0.733 33 H 0.138 0.862 34 H 0.135 0.865 35 H 0.134 0.866 36 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.280 -9.089 -7.966 23.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.162 4.162 3 C 0.094 3.906 4 H 0.119 0.881 5 N -0.381 5.381 6 C 0.320 3.680 7 O -0.386 6.386 8 C -0.304 4.304 9 S 0.168 5.832 10 C -0.683 4.683 11 H 0.091 0.909 12 C -0.136 4.136 13 N -0.503 5.503 14 Si 0.745 3.255 15 H -0.196 1.196 16 H -0.206 1.206 17 H -0.206 1.206 18 C -0.017 4.017 19 C -0.176 4.176 20 C -0.101 4.101 21 C -0.194 4.194 22 C -0.058 4.058 23 N -0.180 5.180 24 H 0.079 0.921 25 H 0.064 0.936 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.090 0.910 29 H 0.235 0.765 30 H 0.108 0.892 31 H 0.106 0.894 32 H 0.077 0.923 33 H 0.156 0.844 34 H 0.153 0.847 35 H 0.152 0.848 36 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 18.362 -9.536 -8.905 22.526 hybrid contribution 1.677 1.014 1.840 2.688 sum 20.039 -8.522 -7.065 22.894 Atomic orbital electron populations 1.21835 0.94142 1.00671 1.03805 1.21866 0.97181 0.94838 1.02323 1.19811 0.86623 0.94913 0.89215 0.88129 1.46019 1.17317 1.58991 1.15747 1.20249 0.80708 0.77398 0.89635 1.90706 1.50392 1.57472 1.40072 1.23537 1.06906 1.02818 0.97137 1.85349 1.06497 1.70900 1.20417 1.22922 1.03931 1.41951 0.99488 0.90914 1.24990 0.94849 0.95592 0.98173 1.70034 1.05012 1.41106 1.34166 0.86122 0.78277 0.78747 0.82384 1.19626 1.20595 1.20572 1.21375 0.96122 0.92761 0.91427 1.22056 0.95602 1.00115 0.99873 1.21614 0.93877 0.96640 0.97978 1.22181 1.01475 0.99069 0.96706 1.22790 0.90074 0.96338 0.96614 1.67469 1.07468 1.17628 1.25468 0.92085 0.93602 0.91665 0.91941 0.90971 0.76533 0.89243 0.89376 0.92275 0.84434 0.84675 0.84787 0.82625 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.17 8.51 37.16 0.32 -1.85 16 2 C -0.12 -1.55 5.42 -26.73 -0.14 -1.70 16 3 C 0.20 2.58 2.57 -69.08 -0.18 2.40 16 4 H 0.10 1.37 7.31 -51.93 -0.38 0.99 16 5 N -0.73 -10.47 5.02 -54.93 -0.28 -10.75 16 6 C 0.53 9.91 6.42 -10.99 -0.07 9.84 16 7 O -0.51 -11.04 13.00 5.55 0.07 -10.97 16 8 C -0.15 -3.14 6.16 36.00 0.22 -2.92 16 9 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 10 C -0.53 -15.33 9.50 30.94 0.29 -15.04 16 11 H 0.07 1.99 7.80 -52.49 -0.41 1.58 16 12 C 0.07 2.10 5.49 -17.43 -0.10 2.00 16 13 N -0.87 -26.24 13.22 55.49 0.73 -25.51 16 14 Si 0.92 21.56 29.55 -169.99 -5.02 16.54 16 15 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 16 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 18 C 0.12 1.36 5.62 -82.58 -0.46 0.90 16 19 C -0.16 -1.48 9.71 -39.44 -0.38 -1.86 16 20 C -0.08 -0.57 10.18 -39.27 -0.40 -0.97 16 21 C -0.17 -1.24 10.11 -39.44 -0.40 -1.64 16 22 C 0.10 0.85 11.18 -17.55 -0.20 0.65 16 23 N -0.47 -5.22 9.95 -9.47 -0.09 -5.31 16 24 H 0.06 0.94 7.85 -51.93 -0.41 0.54 16 25 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.06 1.14 5.65 -51.93 -0.29 0.85 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.07 0.93 8.08 -51.93 -0.42 0.51 16 29 H 0.40 5.18 8.57 -40.82 -0.35 4.83 16 30 H 0.09 1.72 8.14 -51.92 -0.42 1.30 16 31 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 32 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 33 H 0.14 1.13 7.95 -52.49 -0.42 0.71 16 34 H 0.14 0.68 8.06 -52.49 -0.42 0.26 16 35 H 0.13 0.59 8.06 -52.49 -0.42 0.17 16 36 H 0.16 0.93 8.06 -52.49 -0.42 0.50 16 LS Contribution 321.77 15.07 4.85 4.85 Total: -1.00 -33.72 321.77 -8.22 -41.94 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: -4.77 Total: 3.19 kcal Atomic # 6 Polarization: -8.69 SS G_CDS: -1.50 Total: -10.18 kcal Atomic # 7 Polarization: -41.93 SS G_CDS: 0.36 Total: -41.57 kcal Atomic # 8 Polarization: -11.04 SS G_CDS: 0.07 Total: -10.97 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -33.72 -8.22 -41.94 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000911133111.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.941 kcal (2) G-P(sol) polarization free energy of solvation -33.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds