Wall clock time and date at job start Tue Mar 31 2020 01:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52997 * 109.47133 * 2 1 4 4 H 1.09003 * 109.47613 * 305.00422 * 3 2 1 5 5 N 1.46500 * 109.47084 * 65.00364 * 3 2 1 6 6 C 1.34776 * 120.00174 * 275.00117 * 5 3 2 7 7 O 1.21287 * 119.99854 * 359.97438 * 6 5 3 8 8 C 1.50699 * 120.00021 * 179.97438 * 6 5 3 9 9 S 1.81003 * 109.46751 * 179.97438 * 8 6 5 10 10 C 1.76204 * 99.99678 * 179.97438 * 9 8 6 11 11 H 1.07996 * 120.00372 * 359.97438 * 10 9 8 12 12 C 1.38800 * 119.99956 * 180.02562 * 10 9 8 13 13 N 1.31639 * 119.99893 * 359.97438 * 12 10 9 14 14 Si 1.86796 * 120.00186 * 179.97438 * 12 10 9 15 15 H 1.48500 * 109.47138 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.47170 * 119.99872 * 14 12 10 17 17 H 1.48498 * 109.47526 * 239.99854 * 14 12 10 18 18 C 1.50703 * 109.47483 * 185.00374 * 3 2 1 19 19 C 1.38225 * 119.61869 * 124.99916 * 18 3 2 20 20 C 1.38635 * 119.15939 * 179.97438 * 19 18 3 21 21 C 1.38675 * 118.41956 * 0.02562 * 20 19 18 22 22 C 1.38186 * 119.16332 * 0.27967 * 21 20 19 23 23 N 1.31860 * 119.61591 * 304.98272 * 18 3 2 24 24 H 1.08998 * 109.47513 * 59.99950 * 1 2 3 25 25 H 1.08997 * 109.46924 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.46691 * 299.99514 * 1 2 3 27 27 H 1.09002 * 109.47179 * 240.00481 * 2 1 3 28 28 H 1.08997 * 109.47514 * 120.00603 * 2 1 3 29 29 H 0.97004 * 119.99960 * 94.99612 * 5 3 2 30 30 H 1.08999 * 109.47163 * 299.99452 * 8 6 5 31 31 H 1.08992 * 109.47138 * 60.00279 * 8 6 5 32 32 H 0.97003 * 119.99651 * 180.02562 * 13 12 10 33 33 H 1.07997 * 120.42090 * 359.96022 * 19 18 3 34 34 H 1.07998 * 120.78847 * 180.02562 * 20 19 18 35 35 H 1.08002 * 120.41399 * 179.97438 * 21 20 19 36 36 H 1.07999 * 119.61418 * 179.70216 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9816 -0.8418 5 7 1.6525 2.0974 1.2518 6 6 0.4352 2.6643 1.3671 7 8 -0.3393 2.6326 0.4343 8 6 0.0364 3.3375 2.6551 9 16 -1.6420 3.9963 2.4968 10 6 -1.8442 4.7059 4.0970 11 1 -1.0446 4.6438 4.8202 12 6 -3.0315 5.3439 4.4282 13 7 -4.0064 5.4193 3.5468 14 14 -3.2462 6.0955 6.1248 15 1 -2.0128 5.8775 6.9225 16 1 -3.4981 7.5530 5.9922 17 1 -4.3981 5.4543 6.8082 18 6 3.5419 1.4444 -0.1239 19 6 4.1425 2.1628 -1.1406 20 6 5.5249 2.1583 -1.2454 21 6 6.2546 1.4277 -0.3198 22 6 5.5842 0.7286 0.6657 23 7 4.2678 0.7609 0.7390 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 2.2720 2.1230 1.9978 30 1 0.0674 2.6128 3.4686 31 1 0.7277 4.1528 2.8681 32 1 -4.8360 5.8655 3.7783 33 1 3.5426 2.7203 -1.8446 34 1 6.0217 2.7107 -2.0293 35 1 7.3331 1.4014 -0.3716 36 1 6.1450 0.1533 1.3875 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000911133111.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:57:44 Heat of formation + Delta-G solvation = -32.793379 kcal Electronic energy + Delta-G solvation = -18870.288251 eV Core-core repulsion = 15865.430268 eV Total energy + Delta-G solvation = -3004.857982 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.55123 -40.44318 -36.87282 -34.58369 -33.64434 -33.33413 -32.23528 -30.56524 -27.74682 -27.24278 -24.55019 -23.59675 -22.34418 -21.37843 -19.87563 -18.25693 -17.88337 -17.36114 -16.88352 -16.81450 -16.61488 -16.13336 -15.91396 -15.00016 -14.82559 -14.78415 -14.60447 -14.32229 -14.00571 -13.67713 -13.24222 -13.15871 -12.97005 -12.90745 -12.63257 -12.50856 -12.19797 -11.83983 -11.69934 -11.15539 -10.95070 -10.79439 -10.46983 -10.27501 -10.04384 -9.95060 -8.65086 -8.34837 -6.12036 0.08117 0.36167 1.27652 1.41097 1.47101 1.58595 1.64147 2.25526 2.30159 2.90018 2.99231 3.16705 3.32973 3.63521 3.93436 4.03216 4.11343 4.16679 4.23723 4.26620 4.30642 4.40313 4.50579 4.64017 4.70125 4.84099 4.88940 5.00773 5.15355 5.23745 5.27835 5.42142 5.44987 5.51507 5.77601 6.20034 6.48817 7.01482 7.06707 7.24756 8.74512 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.028656 B = 0.003510 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 976.889187 B = 7975.381965 C = 8446.025302 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.113 4.113 3 C 0.201 3.799 4 H 0.089 0.911 5 N -0.706 5.706 6 C 0.538 3.462 7 O -0.547 6.547 8 C -0.131 4.131 9 S -0.140 6.140 10 C -0.548 4.548 11 H 0.080 0.920 12 C 0.014 3.986 13 N -0.910 5.910 14 Si 0.998 3.002 15 H -0.258 1.258 16 H -0.273 1.273 17 H -0.273 1.273 18 C 0.101 3.899 19 C -0.166 4.166 20 C -0.076 4.076 21 C -0.163 4.163 22 C 0.088 3.912 23 N -0.494 5.494 24 H 0.046 0.954 25 H 0.059 0.941 26 H 0.034 0.966 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.410 0.590 30 H 0.104 0.896 31 H 0.104 0.896 32 H 0.271 0.729 33 H 0.142 0.858 34 H 0.163 0.837 35 H 0.167 0.833 36 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.289 -9.347 -7.198 26.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.152 4.152 3 C 0.096 3.904 4 H 0.107 0.893 5 N -0.359 5.359 6 C 0.324 3.676 7 O -0.424 6.424 8 C -0.282 4.282 9 S 0.087 5.913 10 C -0.696 4.696 11 H 0.098 0.902 12 C -0.191 4.191 13 N -0.547 5.547 14 Si 0.820 3.180 15 H -0.182 1.182 16 H -0.198 1.198 17 H -0.199 1.199 18 C -0.036 4.036 19 C -0.187 4.187 20 C -0.101 4.101 21 C -0.183 4.183 22 C -0.070 4.070 23 N -0.204 5.204 24 H 0.065 0.935 25 H 0.078 0.922 26 H 0.053 0.947 27 H 0.099 0.901 28 H 0.091 0.909 29 H 0.246 0.754 30 H 0.122 0.878 31 H 0.122 0.878 32 H 0.080 0.920 33 H 0.160 0.840 34 H 0.181 0.819 35 H 0.185 0.815 36 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 21.417 -9.813 -8.138 24.924 hybrid contribution 0.912 1.013 1.527 2.047 sum 22.329 -8.800 -6.611 24.894 Atomic orbital electron populations 1.21758 0.95858 1.00820 1.01556 1.21774 0.95356 0.94917 1.03147 1.19841 0.88501 0.94502 0.87584 0.89270 1.45807 1.15749 1.57490 1.16866 1.19899 0.81670 0.77579 0.88462 1.90699 1.51742 1.59091 1.40916 1.23376 1.02453 1.03530 0.98882 1.85474 1.12522 1.71917 1.21356 1.23248 1.04544 1.42179 0.99646 0.90194 1.26110 0.94293 0.95859 1.02805 1.70188 1.05709 1.42094 1.36676 0.84913 0.78709 0.77773 0.76594 1.18216 1.19821 1.19865 1.21036 0.94808 0.94772 0.93000 1.22208 0.96866 0.99983 0.99596 1.21990 0.93061 0.96455 0.98638 1.22572 1.03120 0.97276 0.95298 1.23280 0.89364 0.96727 0.97606 1.67392 1.08878 1.18185 1.25924 0.93461 0.92212 0.94722 0.90143 0.90933 0.75403 0.87792 0.87756 0.91972 0.83982 0.81921 0.81532 0.80343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.29 8.51 71.98 0.61 -3.68 16 2 C -0.11 -2.81 5.42 30.59 0.17 -2.64 16 3 C 0.20 5.12 2.57 44.25 0.11 5.23 16 4 H 0.09 2.49 7.31 -2.39 -0.02 2.47 16 5 N -0.71 -20.17 5.02 -446.09 -2.24 -22.41 16 6 C 0.54 20.33 6.42 87.66 0.56 20.89 16 7 O -0.55 -24.55 13.00 -3.05 -0.04 -24.59 16 8 C -0.13 -5.40 6.16 71.24 0.44 -4.96 16 9 S -0.14 -7.83 20.57 -56.49 -1.16 -9.00 16 10 C -0.55 -31.79 9.50 67.95 0.65 -31.14 16 11 H 0.08 4.35 7.80 -2.91 -0.02 4.33 16 12 C 0.01 0.81 5.49 84.86 0.47 1.28 16 13 N -0.91 -56.22 13.22 21.65 0.29 -55.93 16 14 Si 1.00 44.13 29.55 68.60 2.03 46.15 16 15 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 16 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 17 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 18 C 0.10 2.15 5.62 42.55 0.24 2.39 16 19 C -0.17 -2.86 9.71 22.36 0.22 -2.65 16 20 C -0.08 -0.91 10.18 22.47 0.23 -0.68 16 21 C -0.16 -1.72 10.11 22.36 0.23 -1.49 16 22 C 0.09 1.24 11.18 84.67 0.95 2.19 16 23 N -0.49 -10.04 9.95 -183.88 -1.83 -11.87 16 24 H 0.05 1.52 7.85 -2.39 -0.02 1.50 16 25 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.03 1.24 5.65 -2.39 -0.01 1.23 16 27 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 28 H 0.07 1.81 8.08 -2.39 -0.02 1.79 16 29 H 0.41 10.21 8.57 -92.71 -0.79 9.41 16 30 H 0.10 3.96 8.14 -2.40 -0.02 3.94 16 31 H 0.10 3.94 8.14 -2.40 -0.02 3.92 16 32 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 33 H 0.14 2.19 7.95 -2.91 -0.02 2.17 16 34 H 0.16 1.01 8.06 -2.91 -0.02 0.98 16 35 H 0.17 0.64 8.06 -2.91 -0.02 0.62 16 36 H 0.18 1.54 8.06 -2.91 -0.02 1.52 16 Total: -1.00 -75.23 321.77 2.20 -73.04 By element: Atomic # 1 Polarization: 19.59 SS G_CDS: 0.29 Total: 19.88 kcal Atomic # 6 Polarization: -20.13 SS G_CDS: 4.86 Total: -15.27 kcal Atomic # 7 Polarization: -86.43 SS G_CDS: -3.78 Total: -90.21 kcal Atomic # 8 Polarization: -24.55 SS G_CDS: -0.04 Total: -24.59 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 2.03 Total: 46.15 kcal Atomic # 16 Polarization: -7.83 SS G_CDS: -1.16 Total: -9.00 kcal Total: -75.23 2.20 -73.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000911133111.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.242 kcal (2) G-P(sol) polarization free energy of solvation -75.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.035 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds