Wall clock time and date at job start Tue Mar 31 2020 01:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33816 * 124.52317 * 2 1 4 4 C 1.37474 * 115.09955 * 179.73031 * 3 2 1 5 5 C 1.36639 * 113.29940 * 359.97438 * 4 3 2 6 6 C 1.46589 * 125.45955 * 179.97438 * 5 4 3 7 7 O 1.21697 * 120.00152 * 354.51102 * 6 5 4 8 8 N 1.34775 * 119.99680 * 174.50381 * 6 5 4 9 9 C 1.47431 * 125.64598 * 184.56381 * 8 6 5 10 10 C 1.55122 * 104.72441 * 155.82296 * 9 8 6 11 11 C 1.55164 * 101.48587 * 37.29316 * 10 9 8 12 12 H 1.08999 * 110.71553 * 82.70362 * 11 10 9 13 13 N 1.46504 * 110.71925 * 205.97215 * 11 10 9 14 14 C 1.36934 * 119.99792 * 199.98105 * 13 11 10 15 15 H 1.08001 * 120.00175 * 359.97438 * 14 13 11 16 16 C 1.38806 * 120.00123 * 179.97438 * 14 13 11 17 17 N 1.31620 * 120.00020 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00211 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47236 * 89.99890 * 18 16 14 20 20 H 1.48501 * 109.47463 * 209.99846 * 18 16 14 21 21 H 1.48500 * 109.47318 * 330.00033 * 18 16 14 22 22 C 1.47021 * 125.65254 * 4.87625 * 8 6 5 23 23 S 1.70615 * 124.52222 * 179.69430 * 2 1 3 24 24 H 1.09004 * 109.46820 * 89.99878 * 1 2 3 25 25 H 1.08995 * 109.47519 * 209.99737 * 1 2 3 26 26 H 1.08999 * 109.47077 * 330.00381 * 1 2 3 27 27 H 1.07997 * 122.45100 * 359.71094 * 3 2 1 28 28 H 1.08004 * 123.35116 * 180.02562 * 4 3 2 29 29 H 1.09007 * 110.36477 * 274.75057 * 9 8 6 30 30 H 1.08998 * 110.36685 * 37.07104 * 9 8 6 31 31 H 1.09003 * 111.19369 * 279.19446 * 10 9 8 32 32 H 1.08995 * 110.91137 * 155.27614 * 10 9 8 33 33 H 0.97000 * 120.00108 * 19.97355 * 13 11 10 34 34 H 0.97005 * 120.00315 * 179.97438 * 17 16 14 35 35 H 1.08998 * 109.88215 * 300.43637 * 22 8 6 36 36 H 1.09008 * 109.88026 * 61.44923 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2654 1.1025 0.0000 4 6 3.6216 0.8774 0.0059 5 6 3.9492 -0.4491 0.0112 6 6 5.3123 -0.9883 0.0176 7 8 6.2644 -0.2370 -0.0825 8 7 5.5111 -2.3162 0.1343 9 6 6.8215 -2.9820 0.2498 10 6 6.5191 -4.3267 0.9615 11 6 5.1526 -4.7083 0.3332 12 1 5.2943 -5.1935 -0.6325 13 7 4.3875 -5.5683 1.2396 14 6 3.3697 -6.3434 0.7515 15 1 3.1306 -6.3205 -0.3014 16 6 2.6451 -7.1586 1.6101 17 7 2.9367 -7.1870 2.8933 18 14 1.2561 -8.2155 0.9445 19 1 1.7921 -9.5399 0.5395 20 1 0.2256 -8.3997 1.9978 21 1 0.6462 -7.5473 -0.2331 22 6 4.4576 -3.3413 0.1610 23 16 2.4739 -1.4057 0.0075 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.8430 2.0964 -0.0046 28 1 4.3550 1.6702 0.0070 29 1 7.2449 -3.1600 -0.7387 30 1 7.5014 -2.3792 0.8518 31 1 6.4291 -4.1907 2.0392 32 1 7.2792 -5.0713 0.7254 33 1 4.6021 -5.5887 2.1853 34 1 2.4301 -7.7564 3.4934 35 1 3.7846 -3.1595 0.9989 36 1 3.8982 -3.3225 -0.7744 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000966361617.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:06 Heat of formation + Delta-G solvation = 9.911792 kcal Electronic energy + Delta-G solvation = -19442.959643 eV Core-core repulsion = 16439.953496 eV Total energy + Delta-G solvation = -3003.006147 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.79001 -38.04268 -36.95421 -34.11923 -32.20655 -31.48690 -29.97912 -27.56864 -27.09698 -24.29031 -23.47541 -22.52012 -20.59276 -20.30352 -18.24844 -17.78875 -17.27800 -16.12021 -15.73958 -15.65338 -14.70314 -14.42762 -14.10902 -13.77523 -13.50677 -13.29424 -13.10428 -12.92576 -12.54742 -12.32053 -12.15643 -11.96289 -11.80814 -11.58558 -11.28006 -10.94304 -10.84357 -10.45055 -10.35972 -10.12891 -9.92321 -9.78050 -9.07134 -8.71138 -8.50874 -8.23596 -7.17008 -5.90552 -3.22169 0.61754 1.61643 2.05721 2.44857 3.16107 3.35573 3.37500 3.41548 3.42829 4.46514 4.67456 4.78508 5.07147 5.14324 5.17238 5.30941 5.35705 5.40218 5.51128 5.56805 5.59421 5.69381 5.82066 5.93529 6.02150 6.04307 6.13315 6.21043 6.26856 6.41079 6.43345 6.51337 6.75379 7.57876 7.69484 8.25824 8.29204 9.38762 9.91240 10.26429 11.31217 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.015275 B = 0.005945 C = 0.004454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.639627 B = 4708.685941 C = 6284.891359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.224 4.224 3 C -0.162 4.162 4 C -0.059 4.059 5 C -0.271 4.271 6 C 0.602 3.398 7 O -0.547 6.547 8 N -0.610 5.610 9 C 0.113 3.887 10 C -0.141 4.141 11 C 0.178 3.822 12 H 0.069 0.931 13 N -0.712 5.712 14 C -0.252 4.252 15 H 0.073 0.927 16 C -0.006 4.006 17 N -0.928 5.928 18 Si 0.907 3.093 19 H -0.288 1.288 20 H -0.291 1.291 21 H -0.280 1.280 22 C 0.059 3.941 23 S 0.253 5.747 24 H 0.075 0.925 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.137 0.863 28 H 0.148 0.852 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.084 0.916 33 H 0.388 0.612 34 H 0.257 0.743 35 H 0.082 0.918 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.652 12.351 -5.695 13.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.343 4.343 3 C -0.192 4.192 4 C -0.093 4.093 5 C -0.392 4.392 6 C 0.391 3.609 7 O -0.427 6.427 8 N -0.343 5.343 9 C -0.010 4.010 10 C -0.179 4.179 11 C 0.065 3.935 12 H 0.087 0.913 13 N -0.352 5.352 14 C -0.382 4.382 15 H 0.091 0.909 16 C -0.203 4.203 17 N -0.575 5.575 18 Si 0.737 3.263 19 H -0.215 1.215 20 H -0.217 1.217 21 H -0.206 1.206 22 C -0.069 4.069 23 S 0.522 5.478 24 H 0.094 0.906 25 H 0.090 0.910 26 H 0.093 0.907 27 H 0.155 0.845 28 H 0.166 0.834 29 H 0.086 0.914 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.103 0.897 33 H 0.223 0.777 34 H 0.067 0.933 35 H 0.100 0.900 36 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.656 11.129 -5.820 12.575 hybrid contribution -0.641 1.072 0.027 1.249 sum -1.298 12.200 -5.793 13.568 Atomic orbital electron populations 1.20364 0.87800 1.03353 1.02808 1.24753 1.02035 1.00088 1.07460 1.19853 0.92572 0.99289 1.07530 1.20621 0.96059 0.94970 0.97650 1.24573 0.97175 0.98168 1.19272 1.16618 0.86883 0.80777 0.76666 1.90779 1.42288 1.57654 1.52011 1.48397 1.09559 1.04913 1.71434 1.22244 0.84973 0.93302 1.00474 1.23129 0.98736 0.95285 1.00791 1.21141 0.89167 0.88060 0.95138 0.91286 1.42397 1.37987 1.47656 1.07118 1.19243 1.08081 1.17417 0.93490 0.90861 1.24767 0.99871 1.00201 0.95441 1.69659 1.42922 1.42554 1.02369 0.86209 0.81770 0.80570 0.77731 1.21532 1.21674 1.20572 1.23541 0.90941 0.90600 1.01797 1.84132 0.92981 1.04621 1.66026 0.90637 0.90951 0.90720 0.84532 0.83449 0.91372 0.90668 0.90376 0.89731 0.77739 0.93262 0.90000 0.91737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.81 10.31 36.01 0.37 -0.44 16 2 C -0.22 -2.79 6.28 -35.86 -0.23 -3.01 16 3 C -0.16 -1.98 10.00 -41.41 -0.41 -2.40 16 4 C -0.06 -0.83 10.02 -40.44 -0.40 -1.24 16 5 C -0.27 -4.32 6.38 -36.79 -0.23 -4.55 16 6 C 0.60 10.72 7.80 -12.89 -0.10 10.62 16 7 O -0.55 -10.92 17.14 5.19 0.09 -10.83 16 8 N -0.61 -10.21 3.32 -171.95 -0.57 -10.78 16 9 C 0.11 1.66 6.90 -2.41 -0.02 1.64 16 10 C -0.14 -2.13 6.71 -24.46 -0.16 -2.30 16 11 C 0.18 3.22 3.59 -66.09 -0.24 2.99 16 12 H 0.07 1.24 8.12 -51.93 -0.42 0.81 16 13 N -0.71 -16.31 5.18 -51.65 -0.27 -16.58 16 14 C -0.25 -6.43 9.98 -15.06 -0.15 -6.58 16 15 H 0.07 1.81 7.83 -52.49 -0.41 1.39 16 16 C -0.01 -0.16 5.50 -17.43 -0.10 -0.25 16 17 N -0.93 -26.50 13.06 55.49 0.72 -25.77 16 18 Si 0.91 21.12 29.55 -169.99 -5.02 16.09 16 19 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 22 C 0.06 1.01 4.94 -3.07 -0.02 0.99 16 23 S 0.25 3.66 18.41 -107.50 -1.98 1.68 16 24 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 25 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.14 1.32 8.06 -52.49 -0.42 0.90 16 28 H 0.15 1.93 8.06 -52.48 -0.42 1.51 16 29 H 0.07 0.92 8.14 -51.92 -0.42 0.49 16 30 H 0.07 1.09 8.08 -51.93 -0.42 0.67 16 31 H 0.08 1.24 8.00 -51.93 -0.42 0.82 16 32 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.39 9.54 7.71 -40.82 -0.31 9.23 16 34 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 35 H 0.08 1.53 6.56 -51.92 -0.34 1.19 16 36 H 0.06 1.07 7.14 -51.92 -0.37 0.70 16 LS Contribution 314.97 15.07 4.75 4.75 Total: -1.00 -30.02 314.97 -8.76 -38.78 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -4.79 Total: 7.20 kcal Atomic # 6 Polarization: -2.84 SS G_CDS: -1.69 Total: -4.53 kcal Atomic # 7 Polarization: -53.02 SS G_CDS: -0.11 Total: -53.14 kcal Atomic # 8 Polarization: -10.92 SS G_CDS: 0.09 Total: -10.83 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 3.66 SS G_CDS: -1.98 Total: 1.68 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.02 -8.76 -38.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966361617.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.690 kcal (2) G-P(sol) polarization free energy of solvation -30.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.670 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.778 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds