Wall clock time and date at job start Tue Mar 31 2020 01:12:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33816 * 124.52317 * 2 1 4 4 C 1.37474 * 115.09955 * 179.73031 * 3 2 1 5 5 C 1.36639 * 113.29940 * 359.97438 * 4 3 2 6 6 C 1.46589 * 125.45955 * 179.97438 * 5 4 3 7 7 O 1.21697 * 120.00152 * 354.51102 * 6 5 4 8 8 N 1.34775 * 119.99680 * 174.50381 * 6 5 4 9 9 C 1.47431 * 125.64598 * 184.56381 * 8 6 5 10 10 C 1.55122 * 104.72441 * 155.82296 * 9 8 6 11 11 C 1.55164 * 101.48587 * 37.29316 * 10 9 8 12 12 H 1.08999 * 110.71553 * 82.70362 * 11 10 9 13 13 N 1.46504 * 110.71925 * 205.97215 * 11 10 9 14 14 C 1.36934 * 119.99792 * 199.98105 * 13 11 10 15 15 H 1.08001 * 120.00175 * 359.97438 * 14 13 11 16 16 C 1.38806 * 120.00123 * 179.97438 * 14 13 11 17 17 N 1.31620 * 120.00020 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00211 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47236 * 89.99890 * 18 16 14 20 20 H 1.48501 * 109.47463 * 209.99846 * 18 16 14 21 21 H 1.48500 * 109.47318 * 330.00033 * 18 16 14 22 22 C 1.47021 * 125.65254 * 4.87625 * 8 6 5 23 23 S 1.70615 * 124.52222 * 179.69430 * 2 1 3 24 24 H 1.09004 * 109.46820 * 89.99878 * 1 2 3 25 25 H 1.08995 * 109.47519 * 209.99737 * 1 2 3 26 26 H 1.08999 * 109.47077 * 330.00381 * 1 2 3 27 27 H 1.07997 * 122.45100 * 359.71094 * 3 2 1 28 28 H 1.08004 * 123.35116 * 180.02562 * 4 3 2 29 29 H 1.09007 * 110.36477 * 274.75057 * 9 8 6 30 30 H 1.08998 * 110.36685 * 37.07104 * 9 8 6 31 31 H 1.09003 * 111.19369 * 279.19446 * 10 9 8 32 32 H 1.08995 * 110.91137 * 155.27614 * 10 9 8 33 33 H 0.97000 * 120.00108 * 19.97355 * 13 11 10 34 34 H 0.97005 * 120.00315 * 179.97438 * 17 16 14 35 35 H 1.08998 * 109.88215 * 300.43637 * 22 8 6 36 36 H 1.09008 * 109.88026 * 61.44923 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2654 1.1025 0.0000 4 6 3.6216 0.8774 0.0059 5 6 3.9492 -0.4491 0.0112 6 6 5.3123 -0.9883 0.0176 7 8 6.2644 -0.2370 -0.0825 8 7 5.5111 -2.3162 0.1343 9 6 6.8215 -2.9820 0.2498 10 6 6.5191 -4.3267 0.9615 11 6 5.1526 -4.7083 0.3332 12 1 5.2943 -5.1935 -0.6325 13 7 4.3875 -5.5683 1.2396 14 6 3.3697 -6.3434 0.7515 15 1 3.1306 -6.3205 -0.3014 16 6 2.6451 -7.1586 1.6101 17 7 2.9367 -7.1870 2.8933 18 14 1.2561 -8.2155 0.9445 19 1 1.7921 -9.5399 0.5395 20 1 0.2256 -8.3997 1.9978 21 1 0.6462 -7.5473 -0.2331 22 6 4.4576 -3.3413 0.1610 23 16 2.4739 -1.4057 0.0075 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.8430 2.0964 -0.0046 28 1 4.3550 1.6702 0.0070 29 1 7.2449 -3.1600 -0.7387 30 1 7.5014 -2.3792 0.8518 31 1 6.4291 -4.1907 2.0392 32 1 7.2792 -5.0713 0.7254 33 1 4.6021 -5.5887 2.1853 34 1 2.4301 -7.7564 3.4934 35 1 3.7846 -3.1595 0.9989 36 1 3.8982 -3.3225 -0.7744 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000966361617.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:05 Heat of formation + Delta-G solvation = -8.270710 kcal Electronic energy + Delta-G solvation = -19443.748096 eV Core-core repulsion = 16439.953496 eV Total energy + Delta-G solvation = -3003.794600 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.13515 -39.22724 -38.26066 -35.87155 -33.48717 -32.93283 -31.40319 -29.11896 -28.17227 -25.93296 -24.74163 -23.77077 -21.95959 -21.61393 -19.39855 -19.25744 -18.95834 -17.50682 -17.04939 -16.83214 -16.41198 -15.68676 -15.29474 -15.26905 -14.93281 -14.71225 -14.38289 -13.98897 -13.83453 -13.56883 -13.32352 -13.19848 -12.94849 -12.86872 -12.74237 -12.55273 -12.47258 -12.09506 -11.75276 -11.65925 -11.56619 -11.24413 -10.93568 -9.95887 -9.58407 -9.44418 -9.07738 -7.93043 -5.23611 -0.49602 0.50900 0.99099 1.35930 1.52205 1.52677 1.60779 1.87110 2.11055 2.58329 3.35944 3.39477 3.82046 3.85021 3.88430 3.91471 4.28272 4.28362 4.31610 4.40370 4.52616 4.66048 4.67293 4.71461 4.78418 4.93886 5.00395 5.08276 5.10825 5.15252 5.23570 5.35983 5.45283 5.56563 6.26905 6.34145 6.93695 7.35514 8.05150 8.29836 9.29804 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.015275 B = 0.005945 C = 0.004454 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1832.639627 B = 4708.685941 C = 6284.891359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.209 4.209 3 C -0.164 4.164 4 C -0.051 4.051 5 C -0.305 4.305 6 C 0.598 3.402 7 O -0.577 6.577 8 N -0.612 5.612 9 C 0.113 3.887 10 C -0.128 4.128 11 C 0.170 3.830 12 H 0.077 0.923 13 N -0.723 5.723 14 C -0.242 4.242 15 H 0.082 0.918 16 C -0.067 4.067 17 N -0.967 5.967 18 Si 0.966 3.034 19 H -0.289 1.289 20 H -0.299 1.299 21 H -0.266 1.266 22 C 0.073 3.927 23 S 0.222 5.778 24 H 0.092 0.908 25 H 0.070 0.930 26 H 0.096 0.904 27 H 0.169 0.831 28 H 0.154 0.846 29 H 0.087 0.913 30 H 0.078 0.922 31 H 0.068 0.932 32 H 0.106 0.894 33 H 0.377 0.623 34 H 0.251 0.749 35 H 0.066 0.934 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.546 13.439 -6.963 15.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.328 4.328 3 C -0.194 4.194 4 C -0.085 4.085 5 C -0.425 4.425 6 C 0.388 3.612 7 O -0.460 6.460 8 N -0.344 5.344 9 C -0.009 4.009 10 C -0.166 4.166 11 C 0.059 3.941 12 H 0.095 0.905 13 N -0.361 5.361 14 C -0.374 4.374 15 H 0.100 0.900 16 C -0.260 4.260 17 N -0.617 5.617 18 Si 0.795 3.205 19 H -0.216 1.216 20 H -0.226 1.226 21 H -0.191 1.191 22 C -0.054 4.054 23 S 0.491 5.509 24 H 0.110 0.890 25 H 0.089 0.911 26 H 0.115 0.885 27 H 0.187 0.813 28 H 0.172 0.828 29 H 0.105 0.895 30 H 0.097 0.903 31 H 0.087 0.913 32 H 0.124 0.876 33 H 0.209 0.791 34 H 0.060 0.940 35 H 0.084 0.916 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.530 12.229 -7.135 14.241 hybrid contribution -0.366 0.860 0.378 1.008 sum -1.896 13.089 -6.758 14.852 Atomic orbital electron populations 1.20524 0.85484 1.04380 1.04169 1.25113 1.03406 0.98772 1.05549 1.20137 0.91612 1.00722 1.06881 1.20919 0.97288 0.94436 0.95889 1.24510 0.96669 0.99095 1.22250 1.16908 0.87460 0.80752 0.76079 1.90747 1.43363 1.58165 1.53689 1.48441 1.10073 1.04763 1.71101 1.22372 0.84344 0.92700 1.01510 1.23046 0.97498 0.96030 1.00054 1.21349 0.90163 0.87685 0.94858 0.90511 1.42517 1.38132 1.48305 1.07191 1.19625 1.07721 1.16292 0.93751 0.89994 1.25490 1.02562 1.02192 0.95731 1.69807 1.44368 1.43967 1.03538 0.85256 0.79042 0.78970 0.77201 1.21598 1.22603 1.19080 1.23199 0.90705 0.90028 1.01460 1.84154 0.93387 1.06316 1.67043 0.88983 0.91094 0.88502 0.81326 0.82819 0.89515 0.90314 0.91292 0.87590 0.79051 0.94022 0.91606 0.91195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.40 10.31 71.24 0.73 -0.66 16 2 C -0.21 -4.72 6.28 24.68 0.15 -4.57 16 3 C -0.16 -3.58 10.00 21.08 0.21 -3.37 16 4 C -0.05 -1.36 10.02 21.72 0.22 -1.14 16 5 C -0.31 -9.58 6.38 24.08 0.15 -9.43 16 6 C 0.60 21.23 7.80 86.42 0.67 21.91 16 7 O -0.58 -23.01 17.14 -4.34 -0.07 -23.09 16 8 N -0.61 -20.21 3.32 -816.14 -2.71 -22.92 16 9 C 0.11 3.18 6.90 86.93 0.60 3.78 16 10 C -0.13 -3.73 6.71 32.06 0.22 -3.52 16 11 C 0.17 6.05 3.59 46.18 0.17 6.21 16 12 H 0.08 2.63 8.12 -2.39 -0.02 2.61 16 13 N -0.72 -33.13 5.18 -317.32 -1.64 -34.78 16 14 C -0.24 -12.30 9.98 84.03 0.84 -11.46 16 15 H 0.08 3.94 7.83 -2.91 -0.02 3.92 16 16 C -0.07 -3.60 5.50 84.86 0.47 -3.13 16 17 N -0.97 -56.18 13.06 21.65 0.28 -55.90 16 18 Si 0.97 43.41 29.55 68.60 2.03 45.43 16 19 H -0.29 -12.88 7.11 99.48 0.71 -12.17 16 20 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 21 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 22 C 0.07 2.50 4.94 86.73 0.43 2.93 16 23 S 0.22 6.28 18.41 -56.49 -1.04 5.24 16 24 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 25 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.17 2.58 8.06 -2.91 -0.02 2.55 16 28 H 0.15 3.84 8.06 -2.91 -0.02 3.81 16 29 H 0.09 2.16 8.14 -2.38 -0.02 2.14 16 30 H 0.08 2.20 8.08 -2.39 -0.02 2.18 16 31 H 0.07 2.16 8.00 -2.39 -0.02 2.14 16 32 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 33 H 0.38 18.84 7.71 -92.71 -0.72 18.13 16 34 H 0.25 14.27 8.31 -92.70 -0.77 13.50 16 35 H 0.07 2.50 6.56 -2.40 -0.02 2.48 16 36 H 0.07 2.30 7.14 -2.38 -0.02 2.28 16 Total: -1.00 -64.33 314.97 2.08 -62.25 By element: Atomic # 1 Polarization: 25.84 SS G_CDS: 0.38 Total: 26.22 kcal Atomic # 6 Polarization: -7.31 SS G_CDS: 4.86 Total: -2.45 kcal Atomic # 7 Polarization: -109.52 SS G_CDS: -4.07 Total: -113.60 kcal Atomic # 8 Polarization: -23.01 SS G_CDS: -0.07 Total: -23.09 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal Atomic # 16 Polarization: 6.28 SS G_CDS: -1.04 Total: 5.24 kcal Total: -64.33 2.08 -62.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000966361617.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.980 kcal (2) G-P(sol) polarization free energy of solvation -64.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.251 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds