Wall clock time and date at job start Tue Mar 31 2020 01:12:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.32776 * 124.71217 * 2 1 4 4 C 1.44424 * 113.08208 * 180.26957 * 3 2 1 5 5 C 1.47195 * 123.45792 * 179.73179 * 4 3 2 6 6 O 1.21626 * 119.99820 * 187.95645 * 5 4 3 7 7 N 1.34776 * 119.99735 * 7.95425 * 5 4 3 8 8 C 1.47418 * 125.65268 * 5.96644 * 7 5 4 9 9 C 1.55127 * 104.72540 * 155.81824 * 8 7 5 10 10 C 1.55154 * 101.48475 * 37.29589 * 9 8 7 11 11 H 1.09005 * 110.72286 * 82.69311 * 10 9 8 12 12 N 1.46502 * 110.72443 * 205.96885 * 10 9 8 13 13 C 1.36929 * 120.00286 * 199.97662 * 12 10 9 14 14 H 1.07999 * 120.00421 * 359.97438 * 13 12 10 15 15 C 1.38815 * 119.99972 * 180.02562 * 13 12 10 16 16 N 1.31619 * 120.00208 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 120.00061 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47309 * 59.99415 * 17 15 13 19 19 H 1.48499 * 109.47117 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46831 * 299.99693 * 17 15 13 21 21 C 1.47025 * 125.64308 * 186.27633 * 7 5 4 22 22 C 1.36006 * 113.07710 * 359.50146 * 4 3 2 23 23 S 1.70442 * 110.81972 * 0.48449 * 22 4 3 24 24 H 1.09000 * 109.46914 * 90.00324 * 1 2 3 25 25 H 1.09003 * 109.46931 * 210.00007 * 1 2 3 26 26 H 1.09003 * 109.47174 * 330.00201 * 1 2 3 27 27 H 1.08002 * 123.45699 * 359.97438 * 3 2 1 28 28 H 1.08999 * 110.36862 * 274.74978 * 8 7 5 29 29 H 1.09000 * 110.37008 * 37.07021 * 8 7 5 30 30 H 1.08998 * 111.19636 * 279.19340 * 9 8 7 31 31 H 1.08997 * 110.94292 * 155.28869 * 9 8 7 32 32 H 0.97005 * 119.99630 * 19.97707 * 12 10 9 33 33 H 0.96993 * 120.00257 * 180.02562 * 16 15 13 34 34 H 1.08995 * 109.88273 * 300.43663 * 21 7 5 35 35 H 1.08999 * 109.88247 * 61.60639 * 21 7 5 36 36 H 1.08001 * 124.58902 * 180.19695 * 22 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2631 1.0914 0.0000 4 6 3.6777 0.8003 -0.0063 5 6 4.7201 1.8395 -0.0132 6 8 5.8865 1.5298 -0.1641 7 7 4.3819 3.1342 0.1474 8 6 3.0322 3.6372 0.4617 9 6 3.2715 5.0127 1.1377 10 6 4.4747 5.5533 0.3208 11 1 4.1354 6.0120 -0.6080 12 7 5.2554 6.5047 1.1156 13 6 6.0897 7.3944 0.4932 14 1 6.1726 7.3946 -0.5837 15 6 6.8297 8.2955 1.2463 16 7 6.7292 8.2951 2.5586 17 14 7.9673 9.5098 0.3971 18 1 7.1771 10.3713 -0.5185 19 1 8.6379 10.3560 1.4167 20 1 8.9909 8.7676 -0.3818 21 6 5.2967 4.2794 0.0320 22 6 3.9476 -0.5327 0.0000 23 16 2.5065 -1.4427 0.0000 24 1 -0.3633 -0.0001 -1.0277 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3634 0.8900 0.5138 27 1 1.8615 2.0940 -0.0004 28 1 2.4498 3.7570 -0.4518 29 1 2.5256 2.9600 1.1494 30 1 3.5345 4.8948 2.1889 31 1 2.4010 5.6589 1.0251 32 1 5.1813 6.5044 2.0828 33 1 7.2460 8.9250 3.0849 34 1 6.1023 4.1851 0.7600 35 1 5.7086 4.3247 -0.9761 36 1 4.9408 -0.9571 0.0000 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000970262096.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:10 Heat of formation + Delta-G solvation = -1.108447 kcal Electronic energy + Delta-G solvation = -19223.491126 eV Core-core repulsion = 16220.007105 eV Total energy + Delta-G solvation = -3003.484021 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.33764 -38.89996 -38.04038 -35.95555 -33.40311 -32.87292 -31.12931 -29.58189 -27.54697 -26.52728 -24.96678 -23.94309 -21.58921 -20.83843 -20.29667 -19.26548 -18.65039 -17.51597 -16.95251 -16.83081 -16.46113 -15.57454 -15.33656 -15.26576 -14.77102 -14.62278 -14.33696 -14.15555 -13.79779 -13.56113 -13.31626 -13.09718 -12.90659 -12.86824 -12.80654 -12.46049 -12.42833 -12.16089 -11.85082 -11.73694 -11.43180 -11.16443 -10.98074 -9.87309 -9.65538 -9.33819 -9.11349 -7.98131 -5.28523 -0.23986 0.55477 0.89633 0.96400 1.46792 1.49841 1.55493 2.00738 2.24419 2.54799 3.32369 3.54248 3.63132 3.79276 3.89896 4.03582 4.29287 4.31119 4.32507 4.41162 4.50105 4.55947 4.63555 4.85215 4.86213 4.91232 4.97173 5.04226 5.17226 5.22743 5.26743 5.36710 5.43515 5.50656 6.23396 6.48286 7.03718 7.30331 8.02268 8.25574 9.24641 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.038479 B = 0.003481 C = 0.003294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 727.496428 B = 8040.871373 C = 8499.191976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.194 4.194 3 C -0.144 4.144 4 C -0.172 4.172 5 C 0.576 3.424 6 O -0.599 6.599 7 N -0.606 5.606 8 C 0.097 3.903 9 C -0.130 4.130 10 C 0.166 3.834 11 H 0.076 0.924 12 N -0.725 5.725 13 C -0.250 4.250 14 H 0.078 0.922 15 C -0.071 4.071 16 N -0.967 5.967 17 Si 0.972 3.028 18 H -0.272 1.272 19 H -0.295 1.295 20 H -0.283 1.283 21 C 0.093 3.907 22 C -0.206 4.206 23 S 0.235 5.765 24 H 0.088 0.912 25 H 0.082 0.918 26 H 0.092 0.908 27 H 0.183 0.817 28 H 0.104 0.896 29 H 0.108 0.892 30 H 0.065 0.935 31 H 0.112 0.888 32 H 0.376 0.624 33 H 0.252 0.748 34 H 0.032 0.968 35 H 0.046 0.954 36 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.756 -18.759 -5.432 27.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.311 4.311 3 C -0.171 4.171 4 C -0.190 4.190 5 C 0.366 3.634 6 O -0.483 6.483 7 N -0.337 5.337 8 C -0.024 4.024 9 C -0.169 4.169 10 C 0.056 3.944 11 H 0.094 0.906 12 N -0.364 5.364 13 C -0.381 4.381 14 H 0.096 0.904 15 C -0.263 4.263 16 N -0.617 5.617 17 Si 0.801 3.199 18 H -0.198 1.198 19 H -0.221 1.221 20 H -0.209 1.209 21 C -0.033 4.033 22 C -0.345 4.345 23 S 0.501 5.499 24 H 0.107 0.893 25 H 0.101 0.899 26 H 0.111 0.889 27 H 0.200 0.800 28 H 0.122 0.878 29 H 0.126 0.874 30 H 0.084 0.916 31 H 0.130 0.870 32 H 0.209 0.791 33 H 0.061 0.939 34 H 0.051 0.949 35 H 0.064 0.936 36 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -18.370 -20.399 -5.641 28.025 hybrid contribution 2.171 2.318 0.147 3.179 sum -16.199 -18.081 -5.494 24.890 Atomic orbital electron populations 1.20515 0.84791 1.04743 1.04163 1.24897 1.02115 0.95521 1.08565 1.21972 0.89477 1.02022 1.03674 1.20128 0.94052 0.92489 1.12294 1.17988 0.87700 0.81673 0.76027 1.90738 1.21768 1.82202 1.53549 1.48394 1.12362 1.04487 1.68493 1.23080 0.83096 0.94967 1.01297 1.23097 0.98687 0.95874 0.99203 1.21438 0.90467 0.86926 0.95607 0.90603 1.42523 1.50200 1.38047 1.05661 1.19616 1.16774 1.09686 0.92047 0.90424 1.25564 1.02481 1.02176 0.96099 1.69797 1.46146 1.40622 1.05126 0.85243 0.78809 0.78771 0.77123 1.19789 1.22145 1.20936 1.22865 0.93872 0.87102 0.99498 1.25696 1.06152 0.97541 1.05130 1.82734 0.91256 1.07571 1.68329 0.89323 0.89936 0.88890 0.80047 0.87785 0.87412 0.91580 0.86960 0.79123 0.93897 0.94936 0.93550 0.81868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.60 10.35 71.24 0.74 0.14 16 2 C -0.19 -2.80 6.44 24.51 0.16 -2.65 16 3 C -0.14 -2.72 8.50 22.67 0.19 -2.52 16 4 C -0.17 -4.65 5.92 -19.87 -0.12 -4.77 16 5 C 0.58 20.91 7.80 86.60 0.68 21.59 16 6 O -0.60 -27.25 17.08 -4.11 -0.07 -27.32 16 7 N -0.61 -20.24 3.32 -815.50 -2.71 -22.95 16 8 C 0.10 2.20 4.98 86.93 0.43 2.63 16 9 C -0.13 -3.59 6.71 32.06 0.22 -3.37 16 10 C 0.17 6.30 3.59 46.18 0.17 6.46 16 11 H 0.08 2.75 8.12 -2.38 -0.02 2.73 16 12 N -0.73 -36.01 5.18 -317.32 -1.64 -37.66 16 13 C -0.25 -13.77 9.98 84.04 0.84 -12.93 16 14 H 0.08 4.10 7.83 -2.91 -0.02 4.08 16 15 C -0.07 -4.05 5.50 84.86 0.47 -3.58 16 16 N -0.97 -59.09 13.06 21.65 0.28 -58.81 16 17 Si 0.97 46.29 29.55 68.60 2.03 48.31 16 18 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 19 H -0.30 -14.17 7.11 99.48 0.71 -13.46 16 20 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 21 C 0.09 3.76 6.63 86.73 0.57 4.33 16 22 C -0.21 -4.95 10.53 67.30 0.71 -4.24 16 23 S 0.23 3.56 23.00 -56.49 -1.30 2.26 16 24 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 25 H 0.08 0.41 8.14 -2.39 -0.02 0.39 16 26 H 0.09 0.47 8.14 -2.39 -0.02 0.46 16 27 H 0.18 2.64 4.23 -2.91 -0.01 2.62 16 28 H 0.10 1.75 7.50 -2.39 -0.02 1.73 16 29 H 0.11 1.95 5.92 -2.39 -0.01 1.94 16 30 H 0.07 2.01 8.00 -2.39 -0.02 1.99 16 31 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 32 H 0.38 20.04 7.71 -92.70 -0.72 19.33 16 33 H 0.25 15.00 8.31 -92.71 -0.77 14.23 16 34 H 0.03 1.56 8.03 -2.39 -0.02 1.54 16 35 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.16 4.10 8.03 -2.91 -0.02 4.08 16 Total: -1.00 -74.75 313.85 2.02 -72.73 By element: Atomic # 1 Polarization: 21.96 SS G_CDS: 0.39 Total: 22.35 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: 5.05 Total: 1.08 kcal Atomic # 7 Polarization: -115.34 SS G_CDS: -4.07 Total: -119.41 kcal Atomic # 8 Polarization: -27.25 SS G_CDS: -0.07 Total: -27.32 kcal Atomic # 14 Polarization: 46.29 SS G_CDS: 2.03 Total: 48.31 kcal Atomic # 16 Polarization: 3.56 SS G_CDS: -1.30 Total: 2.26 kcal Total: -74.75 2.02 -72.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000970262096.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.619 kcal (2) G-P(sol) polarization free energy of solvation -74.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds