Wall clock time and date at job start Tue Mar 31 2020 01:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37474 * 123.34942 * 2 1 4 4 C 1.33815 * 115.09947 * 179.97438 * 3 2 1 5 5 S 1.70616 * 110.95564 * 359.76189 * 4 3 2 6 6 C 1.36646 * 123.35215 * 179.97438 * 2 1 3 7 7 C 1.46583 * 125.45938 * 359.97438 * 6 2 1 8 8 O 1.21703 * 119.99903 * 0.02562 * 7 6 2 9 9 N 1.34776 * 120.00059 * 179.97438 * 7 6 2 10 10 C 1.46495 * 119.99803 * 180.02562 * 9 7 6 11 11 H 1.09000 * 110.78470 * 36.79251 * 10 9 7 12 12 C 1.55405 * 110.85076 * 160.08868 * 10 9 7 13 13 C 1.54914 * 101.66697 * 153.69955 * 12 10 9 14 14 N 1.47426 * 104.82992 * 323.07703 * 13 12 10 15 15 C 1.36936 * 125.64483 * 204.16378 * 14 13 12 16 16 H 1.08004 * 119.99836 * 179.97438 * 15 14 13 17 17 C 1.38815 * 120.00358 * 359.95842 * 15 14 13 18 18 N 1.31619 * 119.99732 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00198 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46977 * 60.00100 * 19 17 15 21 21 H 1.48497 * 109.47073 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.46946 * 300.00062 * 19 17 15 23 23 C 1.47018 * 108.70517 * 24.12623 * 14 13 12 24 24 H 1.08996 * 109.47404 * 270.02365 * 1 2 3 25 25 H 1.08997 * 109.46839 * 30.03207 * 1 2 3 26 26 H 1.09000 * 109.46602 * 150.02877 * 1 2 3 27 27 H 1.07995 * 122.45162 * 359.94981 * 3 2 1 28 28 H 1.08003 * 124.52030 * 179.97438 * 4 3 2 29 29 H 0.96997 * 119.99763 * 0.02562 * 9 7 6 30 30 H 1.09000 * 110.89538 * 35.62760 * 12 10 9 31 31 H 1.09001 * 111.03900 * 271.83245 * 12 10 9 32 32 H 1.08999 * 110.37121 * 204.23438 * 13 12 10 33 33 H 1.09001 * 110.45739 * 81.96050 * 13 12 10 34 34 H 0.96996 * 119.99954 * 180.02562 * 18 17 15 35 35 H 1.09002 * 109.88241 * 118.36067 * 23 14 13 36 36 H 1.09000 * 109.88049 * 239.37196 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2628 1.1484 0.0000 4 6 3.5871 0.9563 0.0005 5 16 3.9624 -0.7080 0.0077 6 6 2.2583 -1.1414 0.0005 7 6 1.7285 -2.5081 0.0017 8 8 0.5258 -2.6946 0.0018 9 7 2.5732 -3.5583 0.0015 10 6 2.0437 -4.9242 0.0021 11 1 1.1427 -4.9900 -0.6078 12 6 3.1166 -5.9337 -0.4927 13 6 2.6629 -7.2403 0.2050 14 7 2.1708 -6.8109 1.5268 15 6 2.1046 -7.5956 2.6471 16 1 1.7271 -7.1853 3.5721 17 6 2.5224 -8.9183 2.5938 18 7 2.9827 -9.4181 1.4666 19 14 2.4328 -9.9884 4.1224 20 1 1.0240 -10.0755 4.5837 21 1 2.9339 -11.3495 3.8037 22 1 3.2688 -9.3910 5.1945 23 6 1.7637 -5.4007 1.4430 24 1 -0.3634 0.0004 1.0276 25 1 -0.3633 0.8897 -0.5143 26 1 -0.3632 -0.8903 -0.5134 27 1 1.8201 2.1334 -0.0008 28 1 4.3205 1.7492 0.0002 29 1 3.5317 -3.4097 0.0011 30 1 4.1115 -5.6380 -0.1595 31 1 3.0846 -6.0385 -1.5772 32 1 3.5053 -7.9228 0.3172 33 1 1.8626 -7.7165 -0.3614 34 1 3.2743 -10.3425 1.4293 35 1 0.7003 -5.3081 1.6640 36 1 2.3422 -4.8054 2.1493 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001009912130.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:19:19 Heat of formation + Delta-G solvation = 22.896257 kcal Electronic energy + Delta-G solvation = -19304.078776 eV Core-core repulsion = 16301.635677 eV Total energy + Delta-G solvation = -3002.443098 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.85325 -38.16728 -36.96367 -34.04966 -31.95646 -31.00707 -29.33657 -28.39344 -26.75088 -24.52736 -23.63425 -21.66824 -20.54421 -19.83375 -18.81062 -18.21182 -16.91013 -15.98626 -15.85135 -15.14396 -14.89975 -14.59565 -14.26153 -13.71252 -13.50177 -13.32746 -12.99189 -12.48254 -12.36294 -12.23521 -11.94314 -11.86480 -11.61513 -11.11505 -11.04289 -10.92733 -10.77111 -10.48909 -10.14110 -9.82177 -9.72457 -9.55319 -9.05191 -8.71646 -8.64622 -8.59752 -6.83420 -5.65168 -3.06604 0.39166 1.33415 1.72308 2.24662 3.25791 3.31637 3.42277 3.46141 3.47805 4.50516 4.67313 4.83275 5.05646 5.15974 5.31031 5.43905 5.45770 5.53678 5.67470 5.76978 5.78493 5.81367 5.88651 6.17234 6.19880 6.36743 6.41090 6.47643 6.55676 6.76347 6.99802 7.47320 7.60930 7.65926 7.83516 8.30990 8.36483 9.22371 9.82858 10.47051 11.39103 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.032356 B = 0.003695 C = 0.003630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.165186 B = 7576.307425 C = 7711.232364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.026 4.026 3 C -0.148 4.148 4 C -0.232 4.232 5 S 0.195 5.805 6 C -0.267 4.267 7 C 0.588 3.412 8 O -0.526 6.526 9 N -0.712 5.712 10 C 0.132 3.868 11 H 0.094 0.906 12 C -0.149 4.149 13 C 0.154 3.846 14 N -0.603 5.603 15 C -0.221 4.221 16 H 0.077 0.923 17 C -0.011 4.011 18 N -0.924 5.924 19 Si 0.916 3.084 20 H -0.285 1.285 21 H -0.290 1.290 22 H -0.285 1.285 23 C 0.129 3.871 24 H 0.075 0.925 25 H 0.063 0.937 26 H 0.094 0.906 27 H 0.143 0.857 28 H 0.168 0.832 29 H 0.395 0.605 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.111 0.889 33 H 0.016 0.984 34 H 0.253 0.747 35 H 0.028 0.972 36 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.772 20.129 -5.823 21.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.041 4.041 3 C -0.180 4.180 4 C -0.369 4.369 5 S 0.463 5.537 6 C -0.387 4.387 7 C 0.374 3.626 8 O -0.404 6.404 9 N -0.362 5.362 10 C 0.028 3.972 11 H 0.112 0.888 12 C -0.189 4.189 13 C 0.028 3.972 14 N -0.330 5.330 15 C -0.350 4.350 16 H 0.095 0.905 17 C -0.206 4.206 18 N -0.573 5.573 19 Si 0.746 3.254 20 H -0.212 1.212 21 H -0.215 1.215 22 H -0.212 1.212 23 C 0.002 3.998 24 H 0.093 0.907 25 H 0.082 0.918 26 H 0.113 0.887 27 H 0.161 0.839 28 H 0.185 0.815 29 H 0.229 0.771 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.129 0.871 33 H 0.034 0.966 34 H 0.064 0.936 35 H 0.046 0.954 36 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 3.352 18.919 -5.745 20.054 hybrid contribution -0.783 0.617 0.822 1.292 sum 2.569 19.535 -4.923 20.309 Atomic orbital electron populations 1.20737 0.88654 1.03842 1.03135 1.19543 0.97954 0.90369 0.96209 1.19927 0.92585 0.99636 1.05804 1.25238 1.00654 1.01844 1.09207 1.83057 1.04375 0.98162 1.68114 1.24544 0.97066 0.97680 1.19405 1.16928 0.86360 0.82743 0.76610 1.90780 1.14257 1.85162 1.50246 1.45965 1.09229 1.06253 1.74727 1.22174 0.98037 0.78650 0.98344 0.88837 1.23384 0.97434 0.98197 0.99854 1.21943 0.99889 0.91511 0.83820 1.44439 1.74454 1.06068 1.08031 1.19052 1.35809 0.91887 0.88232 0.90514 1.24777 1.01536 0.96864 0.97449 1.69753 1.49057 1.14327 1.24166 0.86128 0.77760 0.79565 0.81911 1.21185 1.21545 1.21169 1.21593 0.97598 0.87403 0.93222 0.90653 0.91845 0.88722 0.83890 0.81495 0.77105 0.91667 0.91599 0.87136 0.96570 0.93649 0.95391 0.95714 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 9.55 36.01 0.34 -0.86 16 2 C -0.03 -0.31 5.90 -105.47 -0.62 -0.93 16 3 C -0.15 -1.41 9.97 -41.41 -0.41 -1.82 16 4 C -0.23 -2.00 10.92 29.18 0.32 -1.68 16 5 S 0.19 1.93 22.16 -107.50 -2.38 -0.45 16 6 C -0.27 -3.54 6.45 -36.79 -0.24 -3.78 16 7 C 0.59 9.52 7.77 -12.90 -0.10 9.42 16 8 O -0.53 -10.01 13.97 5.19 0.07 -9.94 16 9 N -0.71 -11.13 5.13 -53.24 -0.27 -11.41 16 10 C 0.13 2.46 3.24 -65.96 -0.21 2.25 16 11 H 0.09 1.82 7.70 -51.93 -0.40 1.42 16 12 C -0.15 -2.75 6.71 -24.44 -0.16 -2.92 16 13 C 0.15 3.70 5.89 -2.53 -0.01 3.69 16 14 N -0.60 -15.80 3.39 -170.07 -0.58 -16.38 16 15 C -0.22 -6.29 10.27 -15.06 -0.15 -6.45 16 16 H 0.08 2.12 7.83 -52.48 -0.41 1.71 16 17 C -0.01 -0.31 5.49 -17.43 -0.10 -0.41 16 18 N -0.92 -26.85 10.09 55.49 0.56 -26.29 16 19 Si 0.92 22.23 29.55 -169.99 -5.02 17.20 16 20 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 23 C 0.13 2.89 6.98 -3.07 -0.02 2.87 16 24 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.09 1.30 6.01 -51.93 -0.31 0.99 16 27 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 28 H 0.17 0.97 8.06 -52.48 -0.42 0.55 16 29 H 0.39 5.25 7.64 -40.82 -0.31 4.94 16 30 H 0.06 1.13 8.01 -51.93 -0.42 0.72 16 31 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.11 2.96 5.87 -51.93 -0.30 2.66 16 33 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 35 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.02 0.56 8.03 -51.93 -0.42 0.14 16 LS Contribution 311.00 15.07 4.69 4.69 Total: -1.00 -31.80 311.00 -8.98 -40.78 By element: Atomic # 1 Polarization: 7.10 SS G_CDS: -4.67 Total: 2.43 kcal Atomic # 6 Polarization: 0.75 SS G_CDS: -1.38 Total: -0.62 kcal Atomic # 7 Polarization: -53.79 SS G_CDS: -0.29 Total: -54.08 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: 0.07 Total: -9.94 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.20 kcal Atomic # 16 Polarization: 1.93 SS G_CDS: -2.38 Total: -0.45 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.80 -8.98 -40.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009912130.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.678 kcal (2) G-P(sol) polarization free energy of solvation -31.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds