Wall clock time and date at job start Tue Mar 31 2020 01:19:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.37474 * 123.34942 * 2 1 4 4 C 1.33815 * 115.09947 * 179.97438 * 3 2 1 5 5 S 1.70616 * 110.95564 * 359.76189 * 4 3 2 6 6 C 1.36646 * 123.35215 * 179.97438 * 2 1 3 7 7 C 1.46583 * 125.45938 * 359.97438 * 6 2 1 8 8 O 1.21703 * 119.99903 * 0.02562 * 7 6 2 9 9 N 1.34776 * 120.00059 * 179.97438 * 7 6 2 10 10 C 1.46495 * 119.99803 * 180.02562 * 9 7 6 11 11 H 1.09000 * 110.78470 * 36.79251 * 10 9 7 12 12 C 1.55405 * 110.85076 * 160.08868 * 10 9 7 13 13 C 1.54914 * 101.66697 * 153.69955 * 12 10 9 14 14 N 1.47426 * 104.82992 * 323.07703 * 13 12 10 15 15 C 1.36936 * 125.64483 * 204.16378 * 14 13 12 16 16 H 1.08004 * 119.99836 * 179.97438 * 15 14 13 17 17 C 1.38815 * 120.00358 * 359.95842 * 15 14 13 18 18 N 1.31619 * 119.99732 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 120.00198 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46977 * 60.00100 * 19 17 15 21 21 H 1.48497 * 109.47073 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.46946 * 300.00062 * 19 17 15 23 23 C 1.47018 * 108.70517 * 24.12623 * 14 13 12 24 24 H 1.08996 * 109.47404 * 270.02365 * 1 2 3 25 25 H 1.08997 * 109.46839 * 30.03207 * 1 2 3 26 26 H 1.09000 * 109.46602 * 150.02877 * 1 2 3 27 27 H 1.07995 * 122.45162 * 359.94981 * 3 2 1 28 28 H 1.08003 * 124.52030 * 179.97438 * 4 3 2 29 29 H 0.96997 * 119.99763 * 0.02562 * 9 7 6 30 30 H 1.09000 * 110.89538 * 35.62760 * 12 10 9 31 31 H 1.09001 * 111.03900 * 271.83245 * 12 10 9 32 32 H 1.08999 * 110.37121 * 204.23438 * 13 12 10 33 33 H 1.09001 * 110.45739 * 81.96050 * 13 12 10 34 34 H 0.96996 * 119.99954 * 180.02562 * 18 17 15 35 35 H 1.09002 * 109.88241 * 118.36067 * 23 14 13 36 36 H 1.09000 * 109.88049 * 239.37196 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2628 1.1484 0.0000 4 6 3.5871 0.9563 0.0005 5 16 3.9624 -0.7080 0.0077 6 6 2.2583 -1.1414 0.0005 7 6 1.7285 -2.5081 0.0017 8 8 0.5258 -2.6946 0.0018 9 7 2.5732 -3.5583 0.0015 10 6 2.0437 -4.9242 0.0021 11 1 1.1427 -4.9900 -0.6078 12 6 3.1166 -5.9337 -0.4927 13 6 2.6629 -7.2403 0.2050 14 7 2.1708 -6.8109 1.5268 15 6 2.1046 -7.5956 2.6471 16 1 1.7271 -7.1853 3.5721 17 6 2.5224 -8.9183 2.5938 18 7 2.9827 -9.4181 1.4666 19 14 2.4328 -9.9884 4.1224 20 1 1.0240 -10.0755 4.5837 21 1 2.9339 -11.3495 3.8037 22 1 3.2688 -9.3910 5.1945 23 6 1.7637 -5.4007 1.4430 24 1 -0.3634 0.0004 1.0276 25 1 -0.3633 0.8897 -0.5143 26 1 -0.3632 -0.8903 -0.5134 27 1 1.8201 2.1334 -0.0008 28 1 4.3205 1.7492 0.0002 29 1 3.5317 -3.4097 0.0011 30 1 4.1115 -5.6380 -0.1595 31 1 3.0846 -6.0385 -1.5772 32 1 3.5053 -7.9228 0.3172 33 1 1.8626 -7.7165 -0.3614 34 1 3.2743 -10.3425 1.4293 35 1 0.7003 -5.3081 1.6640 36 1 2.3422 -4.8054 2.1493 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001009912130.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:19:18 Heat of formation + Delta-G solvation = 2.325573 kcal Electronic energy + Delta-G solvation = -19304.970787 eV Core-core repulsion = 16301.635677 eV Total energy + Delta-G solvation = -3003.335110 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.10514 -39.35370 -38.39331 -35.67839 -33.82475 -31.87754 -31.12249 -29.69870 -28.30896 -26.42470 -24.52154 -22.90765 -22.24652 -21.50765 -19.95923 -19.12446 -18.89035 -17.42090 -16.88912 -16.67974 -16.32209 -15.93605 -15.83095 -15.16134 -14.62757 -14.54594 -14.27192 -14.01167 -13.75223 -13.50046 -13.29278 -13.06274 -13.02236 -12.71497 -12.68864 -12.50703 -12.22474 -12.06539 -11.86143 -11.82450 -11.45546 -10.98518 -10.76685 -10.28460 -9.74892 -9.37270 -8.93811 -7.79969 -5.25399 -0.47493 0.52396 0.95869 1.40962 1.46553 1.49967 1.56454 2.02043 2.13795 2.49522 3.30052 3.60402 3.71211 3.89589 3.99759 4.00611 4.19694 4.26592 4.42181 4.54388 4.68118 4.70047 4.78864 4.86258 4.94189 4.99447 5.01326 5.10596 5.38545 5.42043 5.45815 5.55336 5.58009 5.75789 6.27863 6.43121 7.07765 7.10642 7.73175 8.36628 9.21686 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.032356 B = 0.003695 C = 0.003630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.165186 B = 7576.307425 C = 7711.232364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.026 4.026 3 C -0.159 4.159 4 C -0.211 4.211 5 S 0.224 5.776 6 C -0.313 4.313 7 C 0.585 3.415 8 O -0.565 6.565 9 N -0.704 5.704 10 C 0.150 3.850 11 H 0.084 0.916 12 C -0.127 4.127 13 C 0.153 3.847 14 N -0.623 5.623 15 C -0.248 4.248 16 H 0.075 0.925 17 C -0.060 4.060 18 N -0.945 5.945 19 Si 0.983 3.017 20 H -0.282 1.282 21 H -0.288 1.288 22 H -0.275 1.275 23 C 0.129 3.871 24 H 0.072 0.928 25 H 0.090 0.910 26 H 0.066 0.934 27 H 0.171 0.829 28 H 0.203 0.797 29 H 0.408 0.592 30 H 0.082 0.918 31 H 0.097 0.903 32 H 0.084 0.916 33 H -0.008 1.008 34 H 0.250 0.750 35 H 0.008 0.992 36 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.321 22.532 -5.892 23.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.042 4.042 3 C -0.190 4.190 4 C -0.349 4.349 5 S 0.492 5.508 6 C -0.432 4.432 7 C 0.374 3.626 8 O -0.446 6.446 9 N -0.355 5.355 10 C 0.044 3.956 11 H 0.102 0.898 12 C -0.166 4.166 13 C 0.028 3.972 14 N -0.350 5.350 15 C -0.377 4.377 16 H 0.093 0.907 17 C -0.253 4.253 18 N -0.594 5.594 19 Si 0.810 3.190 20 H -0.208 1.208 21 H -0.214 1.214 22 H -0.201 1.201 23 C 0.003 3.997 24 H 0.091 0.909 25 H 0.109 0.891 26 H 0.085 0.915 27 H 0.188 0.812 28 H 0.220 0.780 29 H 0.245 0.755 30 H 0.101 0.899 31 H 0.115 0.885 32 H 0.102 0.898 33 H 0.010 0.990 34 H 0.060 0.940 35 H 0.026 0.974 36 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges 4.929 21.355 -5.822 22.677 hybrid contribution -1.263 -0.033 0.849 1.523 sum 3.666 21.323 -4.973 22.200 Atomic orbital electron populations 1.20712 0.88975 1.03775 1.02922 1.19851 0.98215 0.91085 0.95080 1.20122 0.92787 0.99849 1.06223 1.25735 1.01101 1.01918 1.06115 1.82929 1.01385 0.99075 1.67380 1.24344 0.99674 0.96163 1.23054 1.17380 0.85873 0.83931 0.75425 1.90760 1.15922 1.85993 1.51943 1.45742 1.09973 1.04912 1.74833 1.21743 0.98012 0.80364 0.95448 0.89757 1.23191 0.97773 0.94559 1.01103 1.21781 0.97983 0.93935 0.83472 1.44720 1.74737 1.07332 1.08197 1.19386 1.36300 0.92847 0.89135 0.90721 1.25616 1.01254 0.97945 1.00477 1.69990 1.49353 1.14277 1.25828 0.85099 0.77797 0.77545 0.78539 1.20789 1.21405 1.20119 1.21655 0.96203 0.85947 0.95929 0.90916 0.89080 0.91546 0.81199 0.77972 0.75503 0.89944 0.88502 0.89765 0.99042 0.94007 0.97434 0.95672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.36 9.55 71.24 0.68 -1.68 16 2 C -0.03 -0.59 5.90 -20.42 -0.12 -0.71 16 3 C -0.16 -2.49 9.97 21.08 0.21 -2.28 16 4 C -0.21 -2.75 10.92 66.81 0.73 -2.02 16 5 S 0.22 3.81 22.16 -56.49 -1.25 2.55 16 6 C -0.31 -7.95 6.45 24.08 0.16 -7.80 16 7 C 0.59 19.04 7.77 86.42 0.67 19.72 16 8 O -0.56 -22.30 13.97 -4.36 -0.06 -22.36 16 9 N -0.70 -21.61 5.13 -440.55 -2.26 -23.87 16 10 C 0.15 5.60 3.24 46.27 0.15 5.75 16 11 H 0.08 3.34 7.70 -2.39 -0.02 3.32 16 12 C -0.13 -4.58 6.71 32.08 0.22 -4.36 16 13 C 0.15 7.58 5.89 86.86 0.51 8.09 16 14 N -0.62 -33.56 3.39 -691.97 -2.35 -35.91 16 15 C -0.25 -14.43 10.27 84.03 0.86 -13.57 16 16 H 0.07 4.23 7.83 -2.91 -0.02 4.21 16 17 C -0.06 -3.44 5.49 84.86 0.47 -2.98 16 18 N -0.95 -56.08 10.09 21.65 0.22 -55.86 16 19 Si 0.98 46.11 29.55 68.60 2.03 48.13 16 20 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 21 H -0.29 -13.37 7.11 99.48 0.71 -12.66 16 22 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 23 C 0.13 5.96 6.98 86.73 0.61 6.57 16 24 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 25 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.07 1.89 6.01 -2.39 -0.01 1.87 16 27 H 0.17 1.69 8.06 -2.91 -0.02 1.67 16 28 H 0.20 1.20 8.06 -2.91 -0.02 1.17 16 29 H 0.41 10.22 7.64 -92.71 -0.71 9.51 16 30 H 0.08 2.70 8.01 -2.39 -0.02 2.68 16 31 H 0.10 2.92 8.14 -2.39 -0.02 2.90 16 32 H 0.08 4.63 5.87 -2.39 -0.01 4.62 16 33 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 34 H 0.25 14.35 8.31 -92.71 -0.77 13.57 16 35 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 36 H 0.03 1.15 8.03 -2.39 -0.02 1.13 16 Total: -1.00 -71.46 311.00 1.85 -69.61 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: 0.39 Total: 12.98 kcal Atomic # 6 Polarization: -0.41 SS G_CDS: 5.14 Total: 4.73 kcal Atomic # 7 Polarization: -111.26 SS G_CDS: -4.39 Total: -115.65 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: -0.06 Total: -22.36 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.13 kcal Atomic # 16 Polarization: 3.81 SS G_CDS: -1.25 Total: 2.55 kcal Total: -71.46 1.85 -69.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009912130.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.936 kcal (2) G-P(sol) polarization free energy of solvation -71.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds