Wall clock time and date at job start Tue Mar 31 2020 01:19:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37469 * 123.35371 * 2 1 4 4 C 1.33818 * 115.10702 * 179.97438 * 3 2 1 5 5 S 1.70617 * 110.94968 * 359.74804 * 4 3 2 6 6 C 1.36652 * 123.35279 * 179.97438 * 2 1 3 7 7 C 1.46581 * 125.45725 * 0.02562 * 6 2 1 8 8 O 1.21710 * 119.99957 * 359.97438 * 7 6 2 9 9 N 1.34775 * 120.00394 * 180.27781 * 7 6 2 10 10 C 1.46497 * 120.00242 * 179.72330 * 9 7 6 11 11 H 1.09002 * 110.88520 * 328.87409 * 10 9 7 12 12 C 1.55161 * 110.99964 * 204.99551 * 10 9 7 13 13 C 1.54323 * 102.94394 * 277.42289 * 12 10 9 14 14 N 1.47028 * 107.27149 * 337.81468 * 13 12 10 15 15 C 1.36932 * 125.64838 * 178.98776 * 14 13 12 16 16 H 1.08001 * 119.99608 * 174.78291 * 15 14 13 17 17 C 1.38814 * 120.00201 * 354.78038 * 15 14 13 18 18 N 1.31619 * 119.99594 * 7.05891 * 17 15 14 19 19 Si 1.86795 * 120.00146 * 187.05798 * 17 15 14 20 20 H 1.48498 * 109.47272 * 94.98345 * 19 17 15 21 21 H 1.48498 * 109.47222 * 214.98852 * 19 17 15 22 22 H 1.48499 * 109.46960 * 334.98625 * 19 17 15 23 23 C 1.47427 * 108.69953 * 358.93509 * 14 13 12 24 24 H 1.09006 * 109.47153 * 270.04028 * 1 2 3 25 25 H 1.08999 * 109.47152 * 30.03926 * 1 2 3 26 26 H 1.08997 * 109.47091 * 150.03748 * 1 2 3 27 27 H 1.08000 * 122.44865 * 359.94626 * 3 2 1 28 28 H 1.07995 * 124.52637 * 179.97438 * 4 3 2 29 29 H 0.97004 * 119.99489 * 359.71648 * 9 7 6 30 30 H 1.09000 * 110.72060 * 35.79204 * 12 10 9 31 31 H 1.09004 * 110.71369 * 158.88414 * 12 10 9 32 32 H 1.09003 * 109.88000 * 97.22545 * 13 12 10 33 33 H 1.08993 * 109.88741 * 218.39531 * 13 12 10 34 34 H 0.97004 * 119.99690 * 180.02562 * 18 17 15 35 35 H 1.09009 * 110.36614 * 265.28945 * 23 14 13 36 36 H 1.09005 * 110.36342 * 142.97294 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2628 1.1483 0.0000 4 6 3.5871 0.9563 0.0005 5 16 3.9623 -0.7081 0.0081 6 6 2.2583 -1.1415 0.0005 7 6 1.7284 -2.5082 0.0006 8 8 0.5257 -2.6946 0.0006 9 7 2.5730 -3.5584 0.0068 10 6 2.0434 -4.9243 0.0130 11 1 1.0895 -4.9688 0.5386 12 6 3.0658 -5.9143 0.6312 13 6 4.0071 -6.2229 -0.5522 14 7 3.2671 -5.9259 -1.7875 15 6 3.7569 -6.0491 -3.0603 16 1 3.1066 -5.8864 -3.9071 17 6 5.0891 -6.3830 -3.2622 18 7 5.8462 -6.7167 -2.2386 19 14 5.8071 -6.3586 -4.9864 20 1 6.4658 -5.0502 -5.2299 21 1 6.8064 -7.4487 -5.1220 22 1 4.7199 -6.5576 -5.9782 23 6 1.9102 -5.4747 -1.4288 24 1 -0.3634 0.0007 1.0277 25 1 -0.3633 0.8896 -0.5144 26 1 -0.3633 -0.8903 -0.5132 27 1 1.8201 2.1334 -0.0009 28 1 4.3205 1.7491 0.0002 29 1 3.5316 -3.4098 0.0070 30 1 3.6138 -5.4432 1.4472 31 1 2.5659 -6.8194 0.9761 32 1 4.8959 -5.5947 -0.4924 33 1 4.2921 -7.2747 -0.5347 34 1 6.7772 -6.9496 -2.3796 35 1 1.2133 -6.3126 -1.4522 36 1 1.5808 -4.6872 -2.1066 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001009912131.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:19:21 Heat of formation + Delta-G solvation = 20.329914 kcal Electronic energy + Delta-G solvation = -19681.580568 eV Core-core repulsion = 16679.026185 eV Total energy + Delta-G solvation = -3002.554383 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.75145 -38.10815 -36.91994 -33.74984 -31.89699 -30.87951 -29.32402 -28.28900 -26.91399 -24.49015 -23.56781 -21.74753 -20.12381 -19.87196 -18.77284 -18.09094 -16.85212 -15.87184 -15.73611 -14.92967 -14.86088 -14.62781 -13.87815 -13.73452 -13.48914 -13.34853 -12.96393 -12.40303 -12.33592 -12.10328 -11.92324 -11.83153 -11.75440 -10.95281 -10.91799 -10.85822 -10.72124 -10.34186 -10.12842 -9.96971 -9.70649 -9.58816 -8.92683 -8.67998 -8.49581 -8.44332 -6.82507 -5.73772 -3.05064 0.54377 1.50592 1.90266 2.37990 3.37705 3.39541 3.45634 3.47083 3.49412 4.50012 4.81072 4.98573 5.18762 5.26993 5.33508 5.44508 5.46759 5.55930 5.74530 5.77612 5.82657 5.89340 5.99635 6.17741 6.31758 6.36077 6.44993 6.48438 6.57362 6.69108 7.02195 7.52257 7.55379 7.78690 7.82940 8.23944 8.45929 9.21187 9.81280 10.47449 11.38627 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.019103 B = 0.005224 C = 0.004664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.379971 B = 5358.844473 C = 6002.175751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.029 4.029 3 C -0.150 4.150 4 C -0.235 4.235 5 S 0.208 5.792 6 C -0.267 4.267 7 C 0.590 3.410 8 O -0.537 6.537 9 N -0.699 5.699 10 C 0.129 3.871 11 H 0.093 0.907 12 C -0.154 4.154 13 C 0.174 3.826 14 N -0.604 5.604 15 C -0.225 4.225 16 H 0.077 0.923 17 C -0.007 4.007 18 N -0.922 5.922 19 Si 0.909 3.091 20 H -0.289 1.289 21 H -0.291 1.291 22 H -0.281 1.281 23 C 0.125 3.875 24 H 0.072 0.928 25 H 0.061 0.939 26 H 0.094 0.906 27 H 0.142 0.858 28 H 0.167 0.833 29 H 0.400 0.600 30 H 0.065 0.935 31 H 0.074 0.926 32 H 0.047 0.953 33 H 0.043 0.957 34 H 0.252 0.748 35 H 0.029 0.971 36 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.811 13.487 7.960 16.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.044 4.044 3 C -0.181 4.181 4 C -0.373 4.373 5 S 0.477 5.523 6 C -0.387 4.387 7 C 0.376 3.624 8 O -0.417 6.417 9 N -0.348 5.348 10 C 0.023 3.977 11 H 0.111 0.889 12 C -0.193 4.193 13 C 0.049 3.951 14 N -0.331 5.331 15 C -0.353 4.353 16 H 0.095 0.905 17 C -0.203 4.203 18 N -0.569 5.569 19 Si 0.739 3.261 20 H -0.217 1.217 21 H -0.218 1.218 22 H -0.207 1.207 23 C -0.002 4.002 24 H 0.091 0.909 25 H 0.080 0.920 26 H 0.113 0.887 27 H 0.159 0.841 28 H 0.184 0.816 29 H 0.235 0.765 30 H 0.084 0.916 31 H 0.092 0.908 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.047 0.953 36 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -4.052 12.423 7.862 15.250 hybrid contribution -0.145 1.069 -0.995 1.468 sum -4.196 13.492 6.867 15.710 Atomic orbital electron populations 1.20708 0.88814 1.03830 1.02802 1.19493 0.97815 0.90365 0.96759 1.19888 0.92577 0.99525 1.06160 1.25269 1.00655 1.02147 1.09263 1.83317 1.04074 0.97661 1.67246 1.24545 0.97249 0.97675 1.19228 1.16875 0.86228 0.82782 0.76519 1.90737 1.14296 1.85301 1.51334 1.45738 1.09676 1.05782 1.73652 1.22181 0.97397 0.79811 0.98279 0.88906 1.23234 0.98334 0.98071 0.99654 1.21189 0.91933 1.00033 0.81909 1.44482 1.08491 1.77660 1.02429 1.19061 0.93199 1.40669 0.82415 0.90521 1.24781 0.96348 1.01736 0.97447 1.69966 1.06837 1.51777 1.28350 0.86140 0.78878 0.77245 0.83809 1.21670 1.21784 1.20664 1.21958 0.89074 0.96264 0.92949 0.90934 0.91958 0.88743 0.84054 0.81576 0.76540 0.91600 0.90781 0.93464 0.93842 0.93805 0.95336 0.93850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.26 9.55 36.00 0.34 -0.92 16 2 C -0.03 -0.39 5.90 -105.48 -0.62 -1.01 16 3 C -0.15 -1.65 9.97 -41.41 -0.41 -2.07 16 4 C -0.24 -2.48 10.92 29.18 0.32 -2.16 16 5 S 0.21 2.60 22.16 -107.50 -2.38 0.22 16 6 C -0.27 -4.01 6.45 -36.79 -0.24 -4.25 16 7 C 0.59 10.30 7.78 -12.90 -0.10 10.20 16 8 O -0.54 -10.35 13.88 5.18 0.07 -10.28 16 9 N -0.70 -12.22 5.18 -53.06 -0.28 -12.49 16 10 C 0.13 2.34 3.43 -65.79 -0.23 2.11 16 11 H 0.09 1.61 7.54 -51.93 -0.39 1.22 16 12 C -0.15 -2.75 6.55 -24.89 -0.16 -2.91 16 13 C 0.17 4.05 5.37 -3.06 -0.02 4.04 16 14 N -0.60 -15.20 3.39 -170.07 -0.58 -15.77 16 15 C -0.23 -6.26 10.27 -15.06 -0.15 -6.42 16 16 H 0.08 2.10 7.84 -52.49 -0.41 1.69 16 17 C -0.01 -0.20 5.48 -17.43 -0.10 -0.29 16 18 N -0.92 -26.51 10.36 55.49 0.57 -25.94 16 19 Si 0.91 22.06 29.56 -169.99 -5.02 17.03 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 23 C 0.12 2.68 6.93 -2.53 -0.02 2.66 16 24 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.09 1.38 6.01 -51.93 -0.31 1.07 16 27 H 0.14 1.20 8.06 -52.49 -0.42 0.78 16 28 H 0.17 1.28 8.06 -52.49 -0.42 0.86 16 29 H 0.40 6.82 7.78 -40.82 -0.32 6.50 16 30 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 31 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.05 1.20 7.30 -51.93 -0.38 0.82 16 33 H 0.04 1.13 7.61 -51.93 -0.40 0.73 16 34 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 35 H 0.03 0.61 8.14 -51.92 -0.42 0.18 16 36 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 311.81 15.07 4.70 4.70 Total: -1.00 -31.05 311.81 -9.02 -40.07 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -4.72 Total: 3.48 kcal Atomic # 6 Polarization: 0.37 SS G_CDS: -1.38 Total: -1.02 kcal Atomic # 7 Polarization: -53.93 SS G_CDS: -0.28 Total: -54.20 kcal Atomic # 8 Polarization: -10.35 SS G_CDS: 0.07 Total: -10.28 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.03 kcal Atomic # 16 Polarization: 2.60 SS G_CDS: -2.38 Total: 0.22 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.05 -9.02 -40.07 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009912131.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.400 kcal (2) G-P(sol) polarization free energy of solvation -31.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.070 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds