Wall clock time and date at job start Tue Mar 31 2020 01:19:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.37469 * 123.35371 * 2 1 4 4 C 1.33818 * 115.10702 * 179.97438 * 3 2 1 5 5 S 1.70617 * 110.94968 * 359.74804 * 4 3 2 6 6 C 1.36652 * 123.35279 * 179.97438 * 2 1 3 7 7 C 1.46581 * 125.45725 * 0.02562 * 6 2 1 8 8 O 1.21710 * 119.99957 * 359.97438 * 7 6 2 9 9 N 1.34775 * 120.00394 * 180.27781 * 7 6 2 10 10 C 1.46497 * 120.00242 * 179.72330 * 9 7 6 11 11 H 1.09002 * 110.88520 * 328.87409 * 10 9 7 12 12 C 1.55161 * 110.99964 * 204.99551 * 10 9 7 13 13 C 1.54323 * 102.94394 * 277.42289 * 12 10 9 14 14 N 1.47028 * 107.27149 * 337.81468 * 13 12 10 15 15 C 1.36932 * 125.64838 * 178.98776 * 14 13 12 16 16 H 1.08001 * 119.99608 * 174.78291 * 15 14 13 17 17 C 1.38814 * 120.00201 * 354.78038 * 15 14 13 18 18 N 1.31619 * 119.99594 * 7.05891 * 17 15 14 19 19 Si 1.86795 * 120.00146 * 187.05798 * 17 15 14 20 20 H 1.48498 * 109.47272 * 94.98345 * 19 17 15 21 21 H 1.48498 * 109.47222 * 214.98852 * 19 17 15 22 22 H 1.48499 * 109.46960 * 334.98625 * 19 17 15 23 23 C 1.47427 * 108.69953 * 358.93509 * 14 13 12 24 24 H 1.09006 * 109.47153 * 270.04028 * 1 2 3 25 25 H 1.08999 * 109.47152 * 30.03926 * 1 2 3 26 26 H 1.08997 * 109.47091 * 150.03748 * 1 2 3 27 27 H 1.08000 * 122.44865 * 359.94626 * 3 2 1 28 28 H 1.07995 * 124.52637 * 179.97438 * 4 3 2 29 29 H 0.97004 * 119.99489 * 359.71648 * 9 7 6 30 30 H 1.09000 * 110.72060 * 35.79204 * 12 10 9 31 31 H 1.09004 * 110.71369 * 158.88414 * 12 10 9 32 32 H 1.09003 * 109.88000 * 97.22545 * 13 12 10 33 33 H 1.08993 * 109.88741 * 218.39531 * 13 12 10 34 34 H 0.97004 * 119.99690 * 180.02562 * 18 17 15 35 35 H 1.09009 * 110.36614 * 265.28945 * 23 14 13 36 36 H 1.09005 * 110.36342 * 142.97294 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2628 1.1483 0.0000 4 6 3.5871 0.9563 0.0005 5 16 3.9623 -0.7081 0.0081 6 6 2.2583 -1.1415 0.0005 7 6 1.7284 -2.5082 0.0006 8 8 0.5257 -2.6946 0.0006 9 7 2.5730 -3.5584 0.0068 10 6 2.0434 -4.9243 0.0130 11 1 1.0895 -4.9688 0.5386 12 6 3.0658 -5.9143 0.6312 13 6 4.0071 -6.2229 -0.5522 14 7 3.2671 -5.9259 -1.7875 15 6 3.7569 -6.0491 -3.0603 16 1 3.1066 -5.8864 -3.9071 17 6 5.0891 -6.3830 -3.2622 18 7 5.8462 -6.7167 -2.2386 19 14 5.8071 -6.3586 -4.9864 20 1 6.4658 -5.0502 -5.2299 21 1 6.8064 -7.4487 -5.1220 22 1 4.7199 -6.5576 -5.9782 23 6 1.9102 -5.4747 -1.4288 24 1 -0.3634 0.0007 1.0277 25 1 -0.3633 0.8896 -0.5144 26 1 -0.3633 -0.8903 -0.5132 27 1 1.8201 2.1334 -0.0009 28 1 4.3205 1.7491 0.0002 29 1 3.5316 -3.4098 0.0070 30 1 3.6138 -5.4432 1.4472 31 1 2.5659 -6.8194 0.9761 32 1 4.8959 -5.5947 -0.4924 33 1 4.2921 -7.2747 -0.5347 34 1 6.7772 -6.9496 -2.3796 35 1 1.2133 -6.3126 -1.4522 36 1 1.5808 -4.6872 -2.1066 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001009912131.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:19:20 Heat of formation + Delta-G solvation = 0.702549 kcal Electronic energy + Delta-G solvation = -19682.431674 eV Core-core repulsion = 16679.026185 eV Total energy + Delta-G solvation = -3003.405490 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.08101 -39.37174 -38.33683 -35.43861 -33.70917 -31.86102 -31.09761 -29.64529 -28.42835 -26.42256 -24.56133 -23.00143 -21.96735 -21.39238 -19.98506 -19.12597 -18.81360 -17.30301 -16.87917 -16.65829 -16.20060 -15.99427 -15.63479 -15.22606 -14.70445 -14.60186 -14.04895 -13.94563 -13.82312 -13.60609 -13.28092 -13.02839 -12.88734 -12.82547 -12.68426 -12.32340 -12.07336 -12.01920 -11.86040 -11.78748 -11.62121 -10.93055 -10.70596 -10.20717 -9.73788 -9.40217 -8.86754 -7.86645 -5.19682 -0.45877 0.53276 0.98109 1.42141 1.45581 1.46308 1.55384 2.09973 2.21174 2.48840 3.32344 3.66144 3.70220 3.90432 3.99600 4.05896 4.26954 4.29785 4.42229 4.65565 4.67820 4.71339 4.82237 4.87853 4.95020 5.00467 5.01733 5.11371 5.39440 5.43988 5.50047 5.58516 5.65702 5.75270 6.19303 6.46986 7.11065 7.12032 7.76276 8.41172 9.23976 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.019103 B = 0.005224 C = 0.004664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.379971 B = 5358.844473 C = 6002.175751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.025 4.025 3 C -0.157 4.157 4 C -0.213 4.213 5 S 0.198 5.802 6 C -0.310 4.310 7 C 0.587 3.413 8 O -0.563 6.563 9 N -0.702 5.702 10 C 0.141 3.859 11 H 0.108 0.892 12 C -0.135 4.135 13 C 0.182 3.818 14 N -0.621 5.621 15 C -0.243 4.243 16 H 0.073 0.927 17 C -0.056 4.056 18 N -0.944 5.944 19 Si 0.972 3.028 20 H -0.286 1.286 21 H -0.292 1.292 22 H -0.274 1.274 23 C 0.122 3.878 24 H 0.080 0.920 25 H 0.089 0.911 26 H 0.066 0.934 27 H 0.174 0.826 28 H 0.201 0.799 29 H 0.401 0.599 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.021 0.979 33 H 0.010 0.990 34 H 0.248 0.752 35 H 0.036 0.964 36 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.891 15.625 8.395 18.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.041 4.041 3 C -0.187 4.187 4 C -0.350 4.350 5 S 0.467 5.533 6 C -0.430 4.430 7 C 0.376 3.624 8 O -0.445 6.445 9 N -0.351 5.351 10 C 0.035 3.965 11 H 0.126 0.874 12 C -0.173 4.173 13 C 0.058 3.942 14 N -0.347 5.347 15 C -0.372 4.372 16 H 0.091 0.909 17 C -0.250 4.250 18 N -0.593 5.593 19 Si 0.800 3.200 20 H -0.213 1.213 21 H -0.219 1.219 22 H -0.198 1.198 23 C -0.004 4.004 24 H 0.099 0.901 25 H 0.107 0.893 26 H 0.084 0.916 27 H 0.191 0.809 28 H 0.218 0.782 29 H 0.236 0.764 30 H 0.109 0.891 31 H 0.113 0.887 32 H 0.039 0.961 33 H 0.028 0.972 34 H 0.058 0.942 35 H 0.053 0.947 36 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -4.148 14.572 8.305 17.278 hybrid contribution -0.149 0.483 -1.145 1.252 sum -4.297 15.055 7.160 17.216 Atomic orbital electron populations 1.20708 0.88400 1.03721 1.03238 1.19877 0.98447 0.90762 0.95033 1.20157 0.92560 1.00024 1.05979 1.25711 1.01312 1.01491 1.06522 1.83353 1.02686 0.99658 1.67599 1.24419 0.98910 0.96797 1.22858 1.17241 0.85885 0.83712 0.75569 1.90713 1.15256 1.85951 1.52583 1.45747 1.09795 1.05605 1.73939 1.22028 0.98214 0.80324 0.95929 0.87393 1.23098 0.97204 0.99077 0.97925 1.20973 0.92426 0.97346 0.83484 1.44704 1.10000 1.77753 1.02277 1.19342 0.93644 1.40560 0.83699 0.90950 1.25522 0.96648 1.01791 1.01012 1.70156 1.06692 1.52420 1.30000 0.85162 0.77998 0.76989 0.79815 1.21317 1.21870 1.19848 1.22071 0.87487 0.96017 0.94829 0.90149 0.89251 0.91566 0.80860 0.78159 0.76424 0.89050 0.88667 0.96097 0.97175 0.94245 0.94658 0.95486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.36 9.55 71.23 0.68 -1.68 16 2 C -0.02 -0.63 5.90 -20.42 -0.12 -0.75 16 3 C -0.16 -2.93 9.97 21.08 0.21 -2.72 16 4 C -0.21 -3.76 10.92 66.81 0.73 -3.03 16 5 S 0.20 4.71 22.16 -56.49 -1.25 3.45 16 6 C -0.31 -9.13 6.45 24.08 0.16 -8.98 16 7 C 0.59 20.59 7.78 86.42 0.67 21.27 16 8 O -0.56 -21.95 13.88 -4.38 -0.06 -22.01 16 9 N -0.70 -24.53 5.18 -440.01 -2.28 -26.81 16 10 C 0.14 5.04 3.43 46.38 0.16 5.20 16 11 H 0.11 3.62 7.54 -2.39 -0.02 3.60 16 12 C -0.13 -4.65 6.55 31.78 0.21 -4.45 16 13 C 0.18 8.67 5.37 86.73 0.47 9.13 16 14 N -0.62 -31.90 3.39 -691.98 -2.35 -34.24 16 15 C -0.24 -13.82 10.27 84.03 0.86 -12.96 16 16 H 0.07 4.05 7.84 -2.91 -0.02 4.03 16 17 C -0.06 -3.18 5.48 84.86 0.46 -2.71 16 18 N -0.94 -55.53 10.36 21.65 0.22 -55.31 16 19 Si 0.97 45.82 29.56 68.60 2.03 47.85 16 20 H -0.29 -13.27 7.11 99.48 0.71 -12.57 16 21 H -0.29 -13.73 7.11 99.48 0.71 -13.03 16 22 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 23 C 0.12 5.31 6.93 86.85 0.60 5.92 16 24 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 25 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.07 1.94 6.01 -2.39 -0.01 1.92 16 27 H 0.17 2.12 8.06 -2.91 -0.02 2.09 16 28 H 0.20 2.12 8.06 -2.91 -0.02 2.10 16 29 H 0.40 13.77 7.78 -92.71 -0.72 13.05 16 30 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 31 H 0.09 2.93 8.14 -2.38 -0.02 2.91 16 32 H 0.02 1.09 7.30 -2.39 -0.02 1.07 16 33 H 0.01 0.54 7.61 -2.39 -0.02 0.52 16 34 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 35 H 0.04 1.49 8.14 -2.38 -0.02 1.47 16 36 H 0.03 1.24 8.14 -2.38 -0.02 1.22 16 Total: -1.00 -68.59 311.81 1.77 -66.82 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: 0.37 Total: 15.99 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: 5.09 Total: 4.25 kcal Atomic # 7 Polarization: -111.95 SS G_CDS: -4.41 Total: -116.36 kcal Atomic # 8 Polarization: -21.95 SS G_CDS: -0.06 Total: -22.01 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 2.03 Total: 47.85 kcal Atomic # 16 Polarization: 4.71 SS G_CDS: -1.25 Total: 3.45 kcal Total: -68.59 1.77 -66.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009912131.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.522 kcal (2) G-P(sol) polarization free energy of solvation -68.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.819 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds