Wall clock time and date at job start Tue Mar 31 2020 01:13:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33810 * 124.52741 * 2 1 4 4 C 1.37471 * 115.10525 * 179.97438 * 3 2 1 5 5 C 1.36650 * 113.29797 * 359.97438 * 4 3 2 6 6 C 1.46576 * 125.46028 * 180.02562 * 5 4 3 7 7 O 1.21703 * 120.00026 * 0.02562 * 6 5 4 8 8 N 1.34771 * 120.00090 * 180.02562 * 6 5 4 9 9 C 1.46501 * 120.00244 * 180.02562 * 8 6 5 10 10 H 1.09003 * 110.88347 * 328.87417 * 9 8 6 11 11 C 1.55154 * 111.00325 * 205.00052 * 9 8 6 12 12 C 1.54334 * 102.94217 * 206.41962 * 11 9 8 13 13 N 1.47020 * 107.26790 * 22.19151 * 12 11 9 14 14 C 1.36935 * 125.64918 * 181.02250 * 13 12 11 15 15 H 1.07993 * 120.00251 * 168.93127 * 14 13 12 16 16 C 1.38813 * 119.99633 * 348.93623 * 14 13 12 17 17 N 1.31619 * 119.99946 * 165.68026 * 16 14 13 18 18 Si 1.86792 * 120.00267 * 345.67982 * 16 14 13 19 19 H 1.48501 * 109.47512 * 185.28256 * 18 16 14 20 20 H 1.48508 * 109.47127 * 305.28168 * 18 16 14 21 21 H 1.48495 * 109.47289 * 65.27833 * 18 16 14 22 22 C 1.47431 * 108.70583 * 1.28516 * 13 12 11 23 23 S 1.70625 * 124.52003 * 180.26690 * 2 1 3 24 24 H 1.09004 * 109.46604 * 90.00050 * 1 2 3 25 25 H 1.08996 * 109.47073 * 210.00105 * 1 2 3 26 26 H 1.08999 * 109.46870 * 330.00471 * 1 2 3 27 27 H 1.08002 * 122.44837 * 359.94284 * 3 2 1 28 28 H 1.08004 * 123.35170 * 179.97438 * 4 3 2 29 29 H 0.97002 * 120.00093 * 359.97438 * 8 6 5 30 30 H 1.09000 * 110.72463 * 88.05810 * 11 9 8 31 31 H 1.09003 * 110.72084 * 324.77832 * 11 9 8 32 32 H 1.09000 * 109.87870 * 262.77342 * 12 11 9 33 33 H 1.08994 * 110.00846 * 141.67886 * 12 11 9 34 34 H 0.97003 * 119.99939 * 354.92820 * 17 16 14 35 35 H 1.08998 * 110.35883 * 94.48293 * 22 13 12 36 36 H 1.09000 * 110.36735 * 216.80265 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2654 1.1024 0.0000 4 6 3.6216 0.8773 0.0006 5 6 3.9493 -0.4493 0.0016 6 6 5.3123 -0.9885 0.0029 7 8 6.2659 -0.2323 0.0036 8 7 5.5095 -2.3217 0.0033 9 6 6.8718 -2.8607 0.0052 10 1 7.5546 -2.1930 -0.5204 11 6 6.9068 -4.2860 -0.6068 12 6 8.1398 -4.9222 0.0691 13 7 8.3896 -4.1768 1.3115 14 6 9.4091 -4.4153 2.1940 15 1 9.6178 -3.7072 2.9822 16 6 10.1745 -5.5672 2.0753 17 7 11.3142 -5.6700 2.7256 18 14 9.5870 -6.9716 0.9928 19 1 10.5101 -8.1261 1.1353 20 1 8.2197 -7.3771 1.4067 21 1 9.5641 -6.5281 -0.4242 22 6 7.3571 -3.1340 1.4530 23 16 2.4739 -1.4058 -0.0065 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.8430 2.0964 -0.0009 28 1 4.3551 1.6701 0.0002 29 1 4.7495 -2.9244 0.0031 30 1 7.0410 -4.2386 -1.6874 31 1 6.0010 -4.8368 -0.3534 32 1 9.0046 -4.8452 -0.5898 33 1 7.9406 -5.9690 0.2986 34 1 11.6555 -4.9140 3.2285 35 1 6.5343 -3.4963 2.0693 36 1 7.7870 -2.2306 1.8855 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001009955332.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:05 Heat of formation + Delta-G solvation = 28.809058 kcal Electronic energy + Delta-G solvation = -19086.120435 eV Core-core repulsion = 16083.933735 eV Total energy + Delta-G solvation = -3002.186700 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.87433 -38.24397 -37.37797 -34.24358 -32.49373 -32.03175 -29.57553 -28.45088 -27.04478 -24.20565 -23.58169 -21.81376 -21.03082 -20.19248 -19.35614 -18.16940 -17.43869 -16.39717 -16.07503 -15.38719 -15.10185 -14.85316 -14.27250 -14.22323 -13.70641 -13.50643 -13.30812 -12.76698 -12.68503 -12.63688 -12.28476 -12.19020 -12.11196 -11.54538 -11.21186 -11.10130 -11.06903 -10.67346 -10.14090 -9.96784 -9.31910 -9.10621 -8.97750 -8.87481 -8.84564 -8.65388 -7.03404 -6.29446 -3.21355 0.26900 1.17652 1.59465 2.16516 3.09601 3.17968 3.41540 3.49113 3.72260 4.40606 4.63219 4.68410 4.80620 4.93112 5.04332 5.07195 5.12399 5.28227 5.31384 5.38226 5.49923 5.52268 5.71563 5.82309 5.86155 5.92861 6.07575 6.10226 6.31834 6.36849 6.54879 6.71726 6.75384 7.47601 7.67703 8.16826 8.35402 9.06025 9.56178 10.22674 11.21366 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.039099 B = 0.003643 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.965167 B = 7683.986904 C = 8010.818327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.198 4.198 3 C -0.155 4.155 4 C -0.054 4.054 5 C -0.262 4.262 6 C 0.589 3.411 7 O -0.526 6.526 8 N -0.713 5.713 9 C 0.128 3.872 10 H 0.104 0.896 11 C -0.135 4.135 12 C 0.112 3.888 13 N -0.611 5.611 14 C -0.321 4.321 15 H 0.079 0.921 16 C -0.023 4.023 17 N -0.929 5.929 18 Si 1.072 2.928 19 H -0.301 1.301 20 H -0.298 1.298 21 H -0.286 1.286 22 C 0.129 3.871 23 S 0.197 5.803 24 H 0.077 0.923 25 H 0.071 0.929 26 H 0.078 0.922 27 H 0.144 0.856 28 H 0.154 0.846 29 H 0.395 0.605 30 H 0.076 0.924 31 H 0.071 0.929 32 H 0.050 0.950 33 H 0.032 0.968 34 H 0.262 0.738 35 H 0.026 0.974 36 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.063 9.739 -8.792 27.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.318 4.318 3 C -0.186 4.186 4 C -0.087 4.087 5 C -0.382 4.382 6 C 0.374 3.626 7 O -0.404 6.404 8 N -0.363 5.363 9 C 0.023 3.977 10 H 0.122 0.878 11 C -0.173 4.173 12 C -0.013 4.013 13 N -0.339 5.339 14 C -0.448 4.448 15 H 0.097 0.903 16 C -0.222 4.222 17 N -0.570 5.570 18 Si 0.907 3.093 19 H -0.230 1.230 20 H -0.227 1.227 21 H -0.213 1.213 22 C 0.001 3.999 23 S 0.465 5.535 24 H 0.096 0.904 25 H 0.090 0.910 26 H 0.097 0.903 27 H 0.162 0.838 28 H 0.171 0.829 29 H 0.229 0.771 30 H 0.095 0.905 31 H 0.090 0.910 32 H 0.068 0.932 33 H 0.049 0.951 34 H 0.072 0.928 35 H 0.043 0.957 36 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -23.221 7.165 -9.209 25.988 hybrid contribution -0.585 2.888 0.612 3.010 sum -23.806 10.053 -8.596 27.234 Atomic orbital electron populations 1.20397 0.87399 1.03538 1.03062 1.24236 1.01532 0.97808 1.08215 1.19968 0.92632 0.99589 1.06423 1.20771 0.96184 0.95272 0.96444 1.24651 0.96860 0.98073 1.18662 1.16948 0.86672 0.82443 0.76517 1.90853 1.41716 1.57947 1.49857 1.45828 1.09364 1.06043 1.75106 1.22392 0.81873 0.94692 0.98716 0.87762 1.22871 0.99498 0.94810 1.00166 1.21988 0.95199 0.95133 0.88988 1.44738 1.30539 1.36706 1.21898 1.20199 1.07254 1.07066 1.10271 0.90348 1.25879 0.95451 0.99339 1.01515 1.70885 1.17988 1.34086 1.34059 0.83811 0.73732 0.76134 0.75663 1.22970 1.22727 1.21318 1.21905 0.91851 0.93014 0.93100 1.82982 0.94429 1.07719 1.68410 0.90401 0.91035 0.90273 0.83847 0.82884 0.77065 0.90507 0.91040 0.93196 0.95052 0.92817 0.95664 0.93136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.45 10.31 36.01 0.37 -0.07 16 2 C -0.20 -1.62 6.28 -35.86 -0.23 -1.85 16 3 C -0.16 -1.37 9.99 -41.42 -0.41 -1.78 16 4 C -0.05 -0.60 10.01 -40.43 -0.40 -1.00 16 5 C -0.26 -3.23 6.45 -36.80 -0.24 -3.47 16 6 C 0.59 9.11 7.78 -12.90 -0.10 9.01 16 7 O -0.53 -10.13 16.48 5.19 0.09 -10.05 16 8 N -0.71 -10.22 5.19 -52.95 -0.27 -10.49 16 9 C 0.13 2.23 3.44 -65.67 -0.23 2.00 16 10 H 0.10 1.97 7.54 -51.93 -0.39 1.58 16 11 C -0.13 -2.18 6.60 -24.89 -0.16 -2.35 16 12 C 0.11 2.43 4.62 -3.06 -0.01 2.41 16 13 N -0.61 -15.39 3.32 -169.93 -0.56 -15.95 16 14 C -0.32 -9.46 10.56 -15.06 -0.16 -9.62 16 15 H 0.08 2.45 8.06 -52.49 -0.42 2.03 16 16 C -0.02 -0.68 5.50 -17.43 -0.10 -0.78 16 17 N -0.93 -29.74 13.70 55.49 0.76 -28.98 16 18 Si 1.07 26.98 24.53 -169.99 -4.17 22.81 16 19 H -0.30 -7.75 7.11 56.52 0.40 -7.34 16 20 H -0.30 -7.19 6.84 56.52 0.39 -6.81 16 21 H -0.29 -6.51 5.43 56.52 0.31 -6.20 16 22 C 0.13 2.74 6.93 -2.41 -0.02 2.72 16 23 S 0.20 1.78 22.10 -107.50 -2.38 -0.60 16 24 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 25 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 27 H 0.14 0.94 8.06 -52.49 -0.42 0.51 16 28 H 0.15 1.67 8.06 -52.48 -0.42 1.24 16 29 H 0.40 4.55 7.68 -40.82 -0.31 4.24 16 30 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.07 1.00 8.00 -51.93 -0.42 0.58 16 32 H 0.05 1.13 6.78 -51.93 -0.35 0.78 16 33 H 0.03 0.71 3.81 -51.93 -0.20 0.52 16 34 H 0.26 8.31 8.73 -40.82 -0.36 7.95 16 35 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 LS Contribution 308.74 15.07 4.65 4.65 Total: -1.00 -34.81 308.74 -8.31 -43.12 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -4.74 Total: 0.26 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: -1.69 Total: -4.78 kcal Atomic # 7 Polarization: -55.34 SS G_CDS: -0.08 Total: -55.42 kcal Atomic # 8 Polarization: -10.13 SS G_CDS: 0.09 Total: -10.05 kcal Atomic # 14 Polarization: 26.98 SS G_CDS: -4.17 Total: 22.81 kcal Atomic # 16 Polarization: 1.78 SS G_CDS: -2.38 Total: -0.60 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -34.81 -8.31 -43.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009955332.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.925 kcal (2) G-P(sol) polarization free energy of solvation -34.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.119 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds