Wall clock time and date at job start Tue Mar 31 2020 01:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.33810 * 124.52741 * 2 1 4 4 C 1.37471 * 115.10525 * 179.97438 * 3 2 1 5 5 C 1.36650 * 113.29797 * 359.97438 * 4 3 2 6 6 C 1.46576 * 125.46028 * 180.02562 * 5 4 3 7 7 O 1.21703 * 120.00026 * 0.02562 * 6 5 4 8 8 N 1.34771 * 120.00090 * 180.02562 * 6 5 4 9 9 C 1.46501 * 120.00244 * 180.02562 * 8 6 5 10 10 H 1.09003 * 110.88347 * 328.87417 * 9 8 6 11 11 C 1.55154 * 111.00325 * 205.00052 * 9 8 6 12 12 C 1.54334 * 102.94217 * 206.41962 * 11 9 8 13 13 N 1.47020 * 107.26790 * 22.19151 * 12 11 9 14 14 C 1.36935 * 125.64918 * 181.02250 * 13 12 11 15 15 H 1.07993 * 120.00251 * 168.93127 * 14 13 12 16 16 C 1.38813 * 119.99633 * 348.93623 * 14 13 12 17 17 N 1.31619 * 119.99946 * 165.68026 * 16 14 13 18 18 Si 1.86792 * 120.00267 * 345.67982 * 16 14 13 19 19 H 1.48501 * 109.47512 * 185.28256 * 18 16 14 20 20 H 1.48508 * 109.47127 * 305.28168 * 18 16 14 21 21 H 1.48495 * 109.47289 * 65.27833 * 18 16 14 22 22 C 1.47431 * 108.70583 * 1.28516 * 13 12 11 23 23 S 1.70625 * 124.52003 * 180.26690 * 2 1 3 24 24 H 1.09004 * 109.46604 * 90.00050 * 1 2 3 25 25 H 1.08996 * 109.47073 * 210.00105 * 1 2 3 26 26 H 1.08999 * 109.46870 * 330.00471 * 1 2 3 27 27 H 1.08002 * 122.44837 * 359.94284 * 3 2 1 28 28 H 1.08004 * 123.35170 * 179.97438 * 4 3 2 29 29 H 0.97002 * 120.00093 * 359.97438 * 8 6 5 30 30 H 1.09000 * 110.72463 * 88.05810 * 11 9 8 31 31 H 1.09003 * 110.72084 * 324.77832 * 11 9 8 32 32 H 1.09000 * 109.87870 * 262.77342 * 12 11 9 33 33 H 1.08994 * 110.00846 * 141.67886 * 12 11 9 34 34 H 0.97003 * 119.99939 * 354.92820 * 17 16 14 35 35 H 1.08998 * 110.35883 * 94.48293 * 22 13 12 36 36 H 1.09000 * 110.36735 * 216.80265 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2654 1.1024 0.0000 4 6 3.6216 0.8773 0.0006 5 6 3.9493 -0.4493 0.0016 6 6 5.3123 -0.9885 0.0029 7 8 6.2659 -0.2323 0.0036 8 7 5.5095 -2.3217 0.0033 9 6 6.8718 -2.8607 0.0052 10 1 7.5546 -2.1930 -0.5204 11 6 6.9068 -4.2860 -0.6068 12 6 8.1398 -4.9222 0.0691 13 7 8.3896 -4.1768 1.3115 14 6 9.4091 -4.4153 2.1940 15 1 9.6178 -3.7072 2.9822 16 6 10.1745 -5.5672 2.0753 17 7 11.3142 -5.6700 2.7256 18 14 9.5870 -6.9716 0.9928 19 1 10.5101 -8.1261 1.1353 20 1 8.2197 -7.3771 1.4067 21 1 9.5641 -6.5281 -0.4242 22 6 7.3571 -3.1340 1.4530 23 16 2.4739 -1.4058 -0.0065 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3633 -0.8899 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.8430 2.0964 -0.0009 28 1 4.3551 1.6701 0.0002 29 1 4.7495 -2.9244 0.0031 30 1 7.0410 -4.2386 -1.6874 31 1 6.0010 -4.8368 -0.3534 32 1 9.0046 -4.8452 -0.5898 33 1 7.9406 -5.9690 0.2986 34 1 11.6555 -4.9140 3.2285 35 1 6.5343 -3.4963 2.0693 36 1 7.7870 -2.2306 1.8855 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001009955332.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:13:04 Heat of formation + Delta-G solvation = 3.344934 kcal Electronic energy + Delta-G solvation = -19087.224643 eV Core-core repulsion = 16083.933735 eV Total energy + Delta-G solvation = -3003.290907 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.12301 -39.44423 -38.56387 -35.82450 -34.24236 -32.99392 -31.30278 -29.90365 -28.07283 -25.88318 -24.51109 -22.94386 -22.72040 -21.79823 -20.37723 -19.60687 -19.02897 -17.68749 -17.15831 -16.91924 -16.26668 -16.14342 -15.62215 -15.52447 -14.85084 -14.82547 -14.42242 -14.19232 -14.06719 -13.94016 -13.38107 -13.17613 -13.08561 -12.97139 -12.74148 -12.56120 -12.34995 -11.90141 -11.79773 -11.43891 -11.29632 -11.07516 -10.74152 -10.33947 -9.64399 -9.54940 -9.14631 -8.70397 -5.53638 -0.54896 0.43291 0.86227 1.34780 1.40931 1.52024 1.73679 1.91920 2.10098 2.56121 3.09546 3.28074 3.50030 3.77000 3.79357 3.87914 4.03150 4.25881 4.26559 4.38778 4.42817 4.65650 4.68840 4.75207 4.76795 4.82171 4.91434 5.06591 5.08935 5.11660 5.20369 5.32386 5.40540 5.50116 6.04568 6.34628 6.77615 7.02070 7.36863 8.02353 8.82309 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.039099 B = 0.003643 C = 0.003494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 715.965167 B = 7683.986904 C = 8010.818327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.185 4.185 3 C -0.168 4.168 4 C -0.053 4.053 5 C -0.306 4.306 6 C 0.588 3.412 7 O -0.577 6.577 8 N -0.700 5.700 9 C 0.144 3.856 10 H 0.086 0.914 11 C -0.116 4.116 12 C 0.098 3.902 13 N -0.632 5.632 14 C -0.319 4.319 15 H 0.037 0.963 16 C -0.080 4.080 17 N -0.962 5.962 18 Si 1.114 2.886 19 H -0.312 1.312 20 H -0.276 1.276 21 H -0.244 1.244 22 C 0.126 3.874 23 S 0.239 5.761 24 H 0.093 0.907 25 H 0.082 0.918 26 H 0.093 0.907 27 H 0.167 0.833 28 H 0.144 0.856 29 H 0.413 0.587 30 H 0.112 0.888 31 H 0.106 0.894 32 H 0.041 0.959 33 H 0.038 0.962 34 H 0.246 0.754 35 H 0.037 0.963 36 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.417 8.874 -11.106 31.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.305 4.305 3 C -0.198 4.198 4 C -0.088 4.088 5 C -0.426 4.426 6 C 0.376 3.624 7 O -0.458 6.458 8 N -0.351 5.351 9 C 0.037 3.963 10 H 0.104 0.896 11 C -0.154 4.154 12 C -0.026 4.026 13 N -0.360 5.360 14 C -0.447 4.447 15 H 0.055 0.945 16 C -0.273 4.273 17 N -0.606 5.606 18 Si 0.940 3.060 19 H -0.241 1.241 20 H -0.204 1.204 21 H -0.169 1.169 22 C -0.001 4.001 23 S 0.507 5.493 24 H 0.112 0.888 25 H 0.100 0.900 26 H 0.112 0.888 27 H 0.184 0.816 28 H 0.162 0.838 29 H 0.250 0.750 30 H 0.130 0.870 31 H 0.124 0.876 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.054 0.946 35 H 0.055 0.945 36 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -27.652 6.318 -11.543 30.623 hybrid contribution 0.662 3.313 1.430 3.668 sum -26.990 9.631 -10.113 30.389 Atomic orbital electron populations 1.20580 0.84876 1.04824 1.04418 1.24761 1.03168 0.97206 1.05339 1.20130 0.91479 1.01117 1.07052 1.20950 0.97402 0.94848 0.95565 1.24407 0.96685 0.99274 1.22239 1.17410 0.87594 0.82255 0.75160 1.90821 1.43747 1.59060 1.52211 1.45581 1.08643 1.06131 1.74725 1.21949 0.83087 0.95731 0.95486 0.89637 1.22862 0.98256 0.92760 1.01534 1.22225 0.97541 0.95469 0.87390 1.44764 1.30453 1.38144 1.22652 1.20056 1.08462 1.06102 1.10087 0.94484 1.27400 0.94854 1.02211 1.02792 1.71005 1.19861 1.33684 1.36071 0.83376 0.73908 0.72335 0.76352 1.24144 1.20364 1.16862 1.22008 0.91112 0.90814 0.96181 1.82745 0.92051 1.07066 1.67430 0.88837 0.89962 0.88828 0.81565 0.83848 0.75001 0.86968 0.87608 0.94079 0.94496 0.94564 0.94532 0.96298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.53 10.31 71.24 0.73 0.20 16 2 C -0.18 -2.37 6.28 24.68 0.15 -2.22 16 3 C -0.17 -2.54 9.99 21.08 0.21 -2.33 16 4 C -0.05 -1.15 10.01 21.72 0.22 -0.93 16 5 C -0.31 -7.21 6.45 24.07 0.16 -7.06 16 6 C 0.59 18.06 7.78 86.42 0.67 18.73 16 7 O -0.58 -23.07 16.48 -4.36 -0.07 -23.14 16 8 N -0.70 -18.84 5.19 -439.66 -2.28 -21.12 16 9 C 0.14 4.80 3.44 46.46 0.16 4.96 16 10 H 0.09 3.23 7.54 -2.39 -0.02 3.21 16 11 C -0.12 -3.27 6.60 31.79 0.21 -3.06 16 12 C 0.10 3.98 4.62 86.73 0.40 4.38 16 13 N -0.63 -31.95 3.32 -691.55 -2.30 -34.24 16 14 C -0.32 -19.52 10.56 84.03 0.89 -18.63 16 15 H 0.04 2.49 8.06 -2.91 -0.02 2.47 16 16 C -0.08 -4.95 5.50 84.86 0.47 -4.49 16 17 N -0.96 -64.04 13.70 21.65 0.30 -63.74 16 18 Si 1.11 53.49 24.53 68.60 1.68 55.18 16 19 H -0.31 -15.47 7.11 99.48 0.71 -14.76 16 20 H -0.28 -12.21 6.84 99.48 0.68 -11.53 16 21 H -0.24 -10.06 5.43 99.48 0.54 -9.52 16 22 C 0.13 5.40 6.93 86.93 0.60 6.00 16 23 S 0.24 3.58 22.10 -56.49 -1.25 2.33 16 24 H 0.09 0.36 8.14 -2.38 -0.02 0.34 16 25 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 26 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 27 H 0.17 1.67 8.06 -2.91 -0.02 1.65 16 28 H 0.14 3.22 8.06 -2.91 -0.02 3.20 16 29 H 0.41 8.17 7.68 -92.71 -0.71 7.45 16 30 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 31 H 0.11 2.32 8.00 -2.39 -0.02 2.30 16 32 H 0.04 1.75 6.78 -2.39 -0.02 1.73 16 33 H 0.04 1.52 3.81 -2.39 -0.01 1.51 16 34 H 0.25 16.54 8.73 -92.71 -0.81 15.73 16 35 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 36 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -81.00 308.74 1.11 -79.89 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: 0.16 Total: 9.29 kcal Atomic # 6 Polarization: -9.31 SS G_CDS: 4.87 Total: -4.44 kcal Atomic # 7 Polarization: -114.82 SS G_CDS: -4.28 Total: -119.10 kcal Atomic # 8 Polarization: -23.07 SS G_CDS: -0.07 Total: -23.14 kcal Atomic # 14 Polarization: 53.49 SS G_CDS: 1.68 Total: 55.18 kcal Atomic # 16 Polarization: 3.58 SS G_CDS: -1.25 Total: 2.33 kcal Total: -81.00 1.11 -79.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001009955332.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.233 kcal (2) G-P(sol) polarization free energy of solvation -80.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.235 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds