Wall clock time and date at job start Tue Mar 31 2020 01:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.32769 * 123.45483 * 2 1 4 4 S 1.75508 * 110.57067 * 180.02562 * 3 2 1 5 5 C 1.70446 * 92.44735 * 359.82476 * 4 3 2 6 6 C 1.36007 * 110.81618 * 0.31752 * 5 4 3 7 7 C 1.47190 * 123.45999 * 179.89601 * 6 5 4 8 8 O 1.21638 * 119.99598 * 179.70061 * 7 6 5 9 9 N 1.34774 * 120.00116 * 359.69993 * 7 6 5 10 10 C 1.46498 * 119.99837 * 179.97438 * 9 7 6 11 11 H 1.08993 * 110.78022 * 36.79262 * 10 9 7 12 12 C 1.55161 * 110.71724 * 160.02312 * 10 9 7 13 13 C 1.55129 * 101.48184 * 82.70073 * 12 10 9 14 14 N 1.47425 * 104.72388 * 37.29428 * 13 12 10 15 15 C 1.36936 * 125.64754 * 155.82069 * 14 13 12 16 16 H 1.07996 * 119.99955 * 199.18837 * 15 14 13 17 17 C 1.38811 * 120.00309 * 19.18399 * 15 14 13 18 18 N 1.31622 * 120.00115 * 28.44809 * 17 15 14 19 19 Si 1.86799 * 120.00173 * 208.72953 * 17 15 14 20 20 H 1.48493 * 109.47418 * 179.72460 * 19 17 15 21 21 H 1.48505 * 109.46957 * 299.72340 * 19 17 15 22 22 H 1.48496 * 109.47590 * 59.71887 * 19 17 15 23 23 C 1.47015 * 108.70145 * 335.55282 * 14 13 12 24 24 H 1.09002 * 109.46924 * 269.97296 * 1 2 3 25 25 H 1.09000 * 109.47371 * 29.96747 * 1 2 3 26 26 H 1.08998 * 109.47169 * 149.97565 * 1 2 3 27 27 H 1.07994 * 124.71494 * 0.06321 * 3 2 1 28 28 H 1.07998 * 124.59549 * 180.21018 * 5 4 3 29 29 H 0.96995 * 119.99726 * 0.02562 * 9 7 6 30 30 H 1.09002 * 111.00695 * 200.93354 * 12 10 9 31 31 H 1.09002 * 111.00621 * 324.75956 * 12 10 9 32 32 H 1.09007 * 110.49696 * 278.45294 * 13 12 10 33 33 H 1.09002 * 110.34671 * 156.06236 * 13 12 10 34 34 H 0.97002 * 119.99472 * 5.94122 * 18 17 15 35 35 H 1.09005 * 109.88112 * 120.70617 * 23 14 13 36 36 H 1.09002 * 109.88578 * 241.86686 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2389 1.1077 0.0000 4 16 3.9498 0.7164 -0.0007 5 6 3.6411 -0.9599 0.0042 6 6 2.3033 -1.2049 -0.0008 7 6 1.7263 -2.5590 -0.0005 8 8 0.5187 -2.7055 0.0004 9 7 2.5358 -3.6365 -0.0012 10 6 1.9615 -4.9842 -0.0003 11 1 1.0585 -5.0201 -0.6097 12 6 3.0005 -6.0240 -0.4971 13 6 3.8126 -6.2917 0.7972 14 7 2.8127 -6.2607 1.8801 15 6 2.9339 -6.8786 3.0961 16 1 2.0560 -7.0660 3.6964 17 6 4.1852 -7.2641 3.5572 18 7 5.2583 -6.6020 3.1799 19 14 4.3469 -8.7275 4.7069 20 1 5.7776 -8.9351 5.0457 21 1 3.5765 -8.4680 5.9497 22 1 3.8148 -9.9426 4.0394 23 6 1.6668 -5.4514 1.4406 24 1 -0.3633 -0.0005 1.0277 25 1 -0.3634 0.8903 -0.5133 26 1 -0.3633 -0.8897 -0.5142 27 1 1.8374 2.1102 0.0010 28 1 4.4043 -1.7240 0.0087 29 1 3.4987 -3.5196 -0.0015 30 1 2.5084 -6.9311 -0.8481 31 1 3.6358 -5.6005 -1.2750 32 1 4.5590 -5.5116 0.9476 33 1 4.2900 -7.2704 0.7495 34 1 5.1685 -5.7942 2.6504 35 1 0.7591 -6.0546 1.4565 36 1 1.5512 -4.5867 2.0942 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001010470621.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:25:29 Heat of formation + Delta-G solvation = 15.062048 kcal Electronic energy + Delta-G solvation = -19626.837765 eV Core-core repulsion = 16624.054949 eV Total energy + Delta-G solvation = -3002.782815 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.99433 -37.94141 -36.73912 -34.09054 -32.25239 -30.84212 -29.11303 -27.94529 -27.14876 -24.58052 -24.05093 -21.39571 -20.32784 -19.89646 -18.87592 -17.81393 -17.48614 -16.90590 -15.77107 -14.95277 -14.58783 -14.25784 -13.81706 -13.76827 -13.55100 -13.29553 -13.19514 -12.98052 -12.67248 -12.23009 -12.02759 -11.94115 -11.86759 -11.00713 -10.97902 -10.75365 -10.70816 -10.50745 -10.34892 -10.01670 -9.62549 -9.54455 -9.03177 -8.79907 -8.41471 -8.38316 -6.93310 -6.11578 -3.16382 0.68331 1.43513 1.80279 1.94675 3.34994 3.49063 3.50465 3.53990 3.71765 4.56080 4.59175 4.94132 5.05074 5.13753 5.22701 5.25483 5.35230 5.46660 5.58391 5.60313 5.69542 5.74368 5.91476 6.02310 6.12260 6.15575 6.24329 6.36868 6.52116 6.67539 6.86158 6.92605 6.99729 7.71032 7.82983 8.40836 8.49107 9.01175 9.80576 10.36609 11.20594 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.024019 B = 0.004275 C = 0.004003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.484843 B = 6547.701656 C = 6993.036497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.049 4.049 3 C -0.249 4.249 4 S 0.178 5.822 5 C -0.207 4.207 6 C -0.149 4.149 7 C 0.577 3.423 8 O -0.537 6.537 9 N -0.706 5.706 10 C 0.133 3.867 11 H 0.092 0.908 12 C -0.144 4.144 13 C 0.143 3.857 14 N -0.601 5.601 15 C -0.335 4.335 16 H 0.063 0.937 17 C -0.025 4.025 18 N -0.915 5.915 19 Si 1.064 2.936 20 H -0.285 1.285 21 H -0.293 1.293 22 H -0.293 1.293 23 C 0.126 3.874 24 H 0.071 0.929 25 H 0.060 0.940 26 H 0.093 0.907 27 H 0.167 0.833 28 H 0.170 0.830 29 H 0.398 0.602 30 H 0.081 0.919 31 H 0.068 0.932 32 H 0.024 0.976 33 H 0.052 0.948 34 H 0.266 0.734 35 H 0.034 0.966 36 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.964 14.046 -10.083 17.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.061 4.061 3 C -0.383 4.383 4 S 0.445 5.555 5 C -0.346 4.346 6 C -0.167 4.167 7 C 0.362 3.638 8 O -0.416 6.416 9 N -0.356 5.356 10 C 0.029 3.971 11 H 0.110 0.890 12 C -0.183 4.183 13 C 0.018 3.982 14 N -0.328 5.328 15 C -0.463 4.463 16 H 0.081 0.919 17 C -0.226 4.226 18 N -0.556 5.556 19 Si 0.894 3.106 20 H -0.211 1.211 21 H -0.220 1.220 22 H -0.221 1.221 23 C -0.001 4.001 24 H 0.090 0.910 25 H 0.079 0.921 26 H 0.111 0.889 27 H 0.185 0.815 28 H 0.188 0.812 29 H 0.232 0.768 30 H 0.100 0.900 31 H 0.087 0.913 32 H 0.041 0.959 33 H 0.070 0.930 34 H 0.077 0.923 35 H 0.052 0.948 36 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -1.398 13.780 -9.183 16.619 hybrid contribution -1.764 0.188 -0.596 1.872 sum -3.162 13.969 -9.779 17.342 Atomic orbital electron populations 1.20656 0.88678 1.03556 1.02995 1.19879 0.97578 0.89860 0.98733 1.25278 0.96381 1.02530 1.14154 1.82951 1.05732 0.96978 1.69856 1.25684 0.99781 1.02796 1.06290 1.20251 0.92071 0.94571 1.09851 1.17533 0.86410 0.83471 0.76341 1.90719 1.13982 1.86446 1.50448 1.45852 1.09859 1.05679 1.74248 1.21976 0.96926 0.80240 0.97994 0.88982 1.23178 0.98061 0.98311 0.98749 1.21572 0.91630 0.99623 0.85419 1.44562 1.17303 1.57927 1.13023 1.19735 0.94947 1.35897 0.95748 0.91886 1.25762 0.91615 1.03732 1.01538 1.70805 1.30727 1.17002 1.37071 0.83532 0.75685 0.76044 0.75367 1.21107 1.22008 1.22079 1.21734 0.92199 0.94064 0.92061 0.90998 0.92082 0.88851 0.81545 0.81211 0.76780 0.90010 0.91294 0.95877 0.92973 0.92275 0.94802 0.95402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.21 9.55 36.01 0.34 -0.86 16 2 C -0.05 -0.64 6.01 -104.06 -0.63 -1.26 16 3 C -0.25 -2.59 10.91 28.86 0.31 -2.28 16 4 S 0.18 1.72 23.02 -107.50 -2.48 -0.75 16 5 C -0.21 -2.47 10.38 29.93 0.31 -2.16 16 6 C -0.15 -2.13 5.98 -104.63 -0.63 -2.76 16 7 C 0.58 9.70 7.79 -12.63 -0.10 9.60 16 8 O -0.54 -10.29 13.94 5.24 0.07 -10.22 16 9 N -0.71 -11.48 5.08 -53.18 -0.27 -11.75 16 10 C 0.13 2.38 3.24 -66.10 -0.21 2.16 16 11 H 0.09 1.59 7.70 -51.93 -0.40 1.19 16 12 C -0.14 -2.45 6.65 -24.46 -0.16 -2.61 16 13 C 0.14 3.20 5.36 -2.41 -0.01 3.19 16 14 N -0.60 -15.33 3.26 -169.94 -0.55 -15.89 16 15 C -0.34 -9.63 10.00 -15.06 -0.15 -9.78 16 16 H 0.06 1.83 7.97 -52.49 -0.42 1.41 16 17 C -0.02 -0.71 5.09 -17.43 -0.09 -0.80 16 18 N -0.92 -27.42 13.00 55.49 0.72 -26.70 16 19 Si 1.06 25.49 30.00 -169.99 -5.10 20.39 16 20 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 23 C 0.13 2.80 6.98 -3.07 -0.02 2.77 16 24 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 25 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 26 H 0.09 1.32 6.02 -51.93 -0.31 1.00 16 27 H 0.17 1.30 8.06 -52.49 -0.42 0.88 16 28 H 0.17 1.77 7.01 -52.49 -0.37 1.40 16 29 H 0.40 5.82 7.12 -40.82 -0.29 5.53 16 30 H 0.08 1.33 8.14 -51.93 -0.42 0.91 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.02 0.54 6.81 -51.93 -0.35 0.19 16 33 H 0.05 1.27 8.07 -51.93 -0.42 0.86 16 34 H 0.27 7.95 6.19 -40.82 -0.25 7.69 16 35 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.03 0.68 8.04 -51.93 -0.42 0.26 16 LS Contribution 311.27 15.07 4.69 4.69 Total: -1.00 -32.95 311.27 -8.51 -41.46 By element: Atomic # 1 Polarization: 8.13 SS G_CDS: -4.56 Total: 3.57 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: -1.03 Total: -4.79 kcal Atomic # 7 Polarization: -54.24 SS G_CDS: -0.10 Total: -54.35 kcal Atomic # 8 Polarization: -10.29 SS G_CDS: 0.07 Total: -10.22 kcal Atomic # 14 Polarization: 25.49 SS G_CDS: -5.10 Total: 20.39 kcal Atomic # 16 Polarization: 1.72 SS G_CDS: -2.48 Total: -0.75 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -32.95 -8.51 -41.46 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001010470621.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.518 kcal (2) G-P(sol) polarization free energy of solvation -32.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.456 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds