Wall clock time and date at job start Tue Mar 31 2020 01:25:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.32769 * 123.45483 * 2 1 4 4 S 1.75508 * 110.57067 * 180.02562 * 3 2 1 5 5 C 1.70446 * 92.44735 * 359.82476 * 4 3 2 6 6 C 1.36007 * 110.81618 * 0.31752 * 5 4 3 7 7 C 1.47190 * 123.45999 * 179.89601 * 6 5 4 8 8 O 1.21638 * 119.99598 * 179.70061 * 7 6 5 9 9 N 1.34774 * 120.00116 * 359.69993 * 7 6 5 10 10 C 1.46498 * 119.99837 * 179.97438 * 9 7 6 11 11 H 1.08993 * 110.78022 * 36.79262 * 10 9 7 12 12 C 1.55161 * 110.71724 * 160.02312 * 10 9 7 13 13 C 1.55129 * 101.48184 * 82.70073 * 12 10 9 14 14 N 1.47425 * 104.72388 * 37.29428 * 13 12 10 15 15 C 1.36936 * 125.64754 * 155.82069 * 14 13 12 16 16 H 1.07996 * 119.99955 * 199.18837 * 15 14 13 17 17 C 1.38811 * 120.00309 * 19.18399 * 15 14 13 18 18 N 1.31622 * 120.00115 * 28.44809 * 17 15 14 19 19 Si 1.86799 * 120.00173 * 208.72953 * 17 15 14 20 20 H 1.48493 * 109.47418 * 179.72460 * 19 17 15 21 21 H 1.48505 * 109.46957 * 299.72340 * 19 17 15 22 22 H 1.48496 * 109.47590 * 59.71887 * 19 17 15 23 23 C 1.47015 * 108.70145 * 335.55282 * 14 13 12 24 24 H 1.09002 * 109.46924 * 269.97296 * 1 2 3 25 25 H 1.09000 * 109.47371 * 29.96747 * 1 2 3 26 26 H 1.08998 * 109.47169 * 149.97565 * 1 2 3 27 27 H 1.07994 * 124.71494 * 0.06321 * 3 2 1 28 28 H 1.07998 * 124.59549 * 180.21018 * 5 4 3 29 29 H 0.96995 * 119.99726 * 0.02562 * 9 7 6 30 30 H 1.09002 * 111.00695 * 200.93354 * 12 10 9 31 31 H 1.09002 * 111.00621 * 324.75956 * 12 10 9 32 32 H 1.09007 * 110.49696 * 278.45294 * 13 12 10 33 33 H 1.09002 * 110.34671 * 156.06236 * 13 12 10 34 34 H 0.97002 * 119.99472 * 5.94122 * 18 17 15 35 35 H 1.09005 * 109.88112 * 120.70617 * 23 14 13 36 36 H 1.09002 * 109.88578 * 241.86686 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2389 1.1077 0.0000 4 16 3.9498 0.7164 -0.0007 5 6 3.6411 -0.9599 0.0042 6 6 2.3033 -1.2049 -0.0008 7 6 1.7263 -2.5590 -0.0005 8 8 0.5187 -2.7055 0.0004 9 7 2.5358 -3.6365 -0.0012 10 6 1.9615 -4.9842 -0.0003 11 1 1.0585 -5.0201 -0.6097 12 6 3.0005 -6.0240 -0.4971 13 6 3.8126 -6.2917 0.7972 14 7 2.8127 -6.2607 1.8801 15 6 2.9339 -6.8786 3.0961 16 1 2.0560 -7.0660 3.6964 17 6 4.1852 -7.2641 3.5572 18 7 5.2583 -6.6020 3.1799 19 14 4.3469 -8.7275 4.7069 20 1 5.7776 -8.9351 5.0457 21 1 3.5765 -8.4680 5.9497 22 1 3.8148 -9.9426 4.0394 23 6 1.6668 -5.4514 1.4406 24 1 -0.3633 -0.0005 1.0277 25 1 -0.3634 0.8903 -0.5133 26 1 -0.3633 -0.8897 -0.5142 27 1 1.8374 2.1102 0.0010 28 1 4.4043 -1.7240 0.0087 29 1 3.4987 -3.5196 -0.0015 30 1 2.5084 -6.9311 -0.8481 31 1 3.6358 -5.6005 -1.2750 32 1 4.5590 -5.5116 0.9476 33 1 4.2900 -7.2704 0.7495 34 1 5.1685 -5.7942 2.6504 35 1 0.7591 -6.0546 1.4565 36 1 1.5512 -4.5867 2.0942 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001010470621.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:25:28 Heat of formation + Delta-G solvation = -6.504246 kcal Electronic energy + Delta-G solvation = -19627.772949 eV Core-core repulsion = 16624.054949 eV Total energy + Delta-G solvation = -3003.718000 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.28373 -39.39513 -37.96798 -35.75452 -33.95773 -32.03826 -30.86397 -29.30564 -28.40702 -26.39854 -25.34792 -22.62438 -22.16657 -21.38426 -20.01073 -19.53761 -18.68803 -18.08209 -17.15719 -16.51071 -16.18625 -15.65147 -15.53138 -15.25400 -15.04011 -14.65859 -14.29577 -14.15146 -13.84454 -13.62126 -13.59069 -13.04470 -12.82756 -12.65334 -12.63439 -12.48341 -12.28378 -12.00117 -11.89433 -11.86280 -11.61628 -10.89461 -10.54245 -10.23491 -9.88816 -9.27519 -9.04615 -8.36629 -5.39096 -0.26276 0.60084 0.93506 0.94334 1.56675 1.63893 1.83714 2.08620 2.28603 2.61519 3.14761 3.45911 3.58490 3.71187 3.87767 3.93910 4.14095 4.18898 4.35176 4.42852 4.50104 4.63092 4.69949 4.76535 4.80458 4.86735 4.88655 4.98402 5.02186 5.22028 5.25695 5.47001 5.56558 5.64803 6.29346 6.45276 6.87073 7.13741 7.65969 8.24315 8.94489 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.024019 B = 0.004275 C = 0.004003 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1165.484843 B = 6547.701656 C = 6993.036497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C -0.078 4.078 3 C -0.241 4.241 4 S 0.246 5.754 5 C -0.214 4.214 6 C -0.182 4.182 7 C 0.573 3.427 8 O -0.569 6.569 9 N -0.703 5.703 10 C 0.147 3.853 11 H 0.104 0.896 12 C -0.121 4.121 13 C 0.145 3.855 14 N -0.620 5.620 15 C -0.355 4.355 16 H 0.050 0.950 17 C -0.070 4.070 18 N -0.936 5.936 19 Si 1.116 2.884 20 H -0.287 1.287 21 H -0.279 1.279 22 H -0.280 1.280 23 C 0.125 3.875 24 H 0.063 0.937 25 H 0.087 0.913 26 H 0.067 0.933 27 H 0.196 0.804 28 H 0.181 0.819 29 H 0.406 0.594 30 H 0.095 0.905 31 H 0.107 0.893 32 H 0.014 0.986 33 H 0.026 0.974 34 H 0.255 0.745 35 H 0.030 0.970 36 H 0.000 1.000 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.193 15.252 -11.075 18.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.089 4.089 3 C -0.376 4.376 4 S 0.513 5.487 5 C -0.353 4.353 6 C -0.201 4.201 7 C 0.360 3.640 8 O -0.450 6.450 9 N -0.354 5.354 10 C 0.042 3.958 11 H 0.122 0.878 12 C -0.159 4.159 13 C 0.020 3.980 14 N -0.347 5.347 15 C -0.483 4.483 16 H 0.068 0.932 17 C -0.267 4.267 18 N -0.578 5.578 19 Si 0.939 3.061 20 H -0.213 1.213 21 H -0.205 1.205 22 H -0.206 1.206 23 C -0.001 4.001 24 H 0.082 0.918 25 H 0.106 0.894 26 H 0.086 0.914 27 H 0.214 0.786 28 H 0.198 0.802 29 H 0.242 0.758 30 H 0.114 0.886 31 H 0.125 0.875 32 H 0.031 0.969 33 H 0.044 0.956 34 H 0.066 0.934 35 H 0.048 0.952 36 H 0.018 0.982 Dipole moment (debyes) X Y Z Total from point charges -0.628 15.013 -10.200 18.161 hybrid contribution -1.970 -0.062 -0.269 1.989 sum -2.599 14.951 -10.469 18.436 Atomic orbital electron populations 1.20579 0.88818 1.03581 1.02487 1.19988 0.97923 0.90196 1.00787 1.25670 0.96994 1.03155 1.11799 1.82771 1.04357 0.94178 1.67369 1.25975 0.99217 1.05136 1.04967 1.20177 0.93262 0.93566 1.13059 1.18015 0.86095 0.84546 0.75325 1.90696 1.15332 1.87069 1.51925 1.45783 1.10309 1.05058 1.74244 1.21759 0.97889 0.81262 0.94927 0.87810 1.23084 0.97287 0.98773 0.96804 1.21561 0.91492 0.97810 0.87166 1.44803 1.18644 1.58295 1.12995 1.19965 0.94740 1.36432 0.97186 0.93201 1.27142 0.91236 1.05469 1.02838 1.70913 1.31269 1.17285 1.38349 0.82854 0.75658 0.73288 0.74256 1.21280 1.20455 1.20573 1.21800 0.91219 0.92618 0.94495 0.91805 0.89376 0.91447 0.78649 0.80199 0.75819 0.88636 0.87511 0.96872 0.95560 0.93433 0.95198 0.98207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.30 9.55 71.24 0.68 -1.62 16 2 C -0.08 -1.94 6.01 -19.46 -0.12 -2.05 16 3 C -0.24 -4.35 10.91 66.64 0.73 -3.62 16 4 S 0.25 4.00 23.02 -56.49 -1.30 2.70 16 5 C -0.21 -4.75 10.38 67.30 0.70 -4.06 16 6 C -0.18 -5.10 5.98 -19.87 -0.12 -5.22 16 7 C 0.57 19.47 7.79 86.60 0.67 20.14 16 8 O -0.57 -22.47 13.94 -4.15 -0.06 -22.52 16 9 N -0.70 -22.68 5.08 -440.41 -2.24 -24.92 16 10 C 0.15 5.17 3.24 46.18 0.15 5.32 16 11 H 0.10 3.48 7.70 -2.39 -0.02 3.47 16 12 C -0.12 -3.91 6.65 32.06 0.21 -3.70 16 13 C 0.14 6.51 5.36 86.93 0.47 6.98 16 14 N -0.62 -32.37 3.26 -691.56 -2.26 -34.63 16 15 C -0.35 -20.85 10.00 84.03 0.84 -20.01 16 16 H 0.05 2.98 7.97 -2.91 -0.02 2.96 16 17 C -0.07 -4.06 5.09 84.86 0.43 -3.63 16 18 N -0.94 -56.93 13.00 21.65 0.28 -56.65 16 19 Si 1.12 51.66 30.00 68.60 2.06 53.72 16 20 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 21 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 22 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 23 C 0.12 5.70 6.98 86.73 0.61 6.30 16 24 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.09 1.53 8.13 -2.39 -0.02 1.51 16 26 H 0.07 1.97 6.02 -2.39 -0.01 1.95 16 27 H 0.20 2.27 8.06 -2.91 -0.02 2.24 16 28 H 0.18 3.45 7.01 -2.91 -0.02 3.43 16 29 H 0.41 11.58 7.12 -92.71 -0.66 10.92 16 30 H 0.10 2.88 8.14 -2.39 -0.02 2.86 16 31 H 0.11 2.70 8.14 -2.39 -0.02 2.68 16 32 H 0.01 0.63 6.81 -2.38 -0.02 0.62 16 33 H 0.03 1.30 8.07 -2.39 -0.02 1.28 16 34 H 0.26 15.63 6.19 -92.71 -0.57 15.06 16 35 H 0.03 1.37 8.14 -2.38 -0.02 1.35 16 36 H 0.00 -0.01 8.04 -2.39 -0.02 -0.03 16 Total: -1.00 -73.54 311.27 2.37 -71.17 By element: Atomic # 1 Polarization: 15.68 SS G_CDS: 0.64 Total: 16.32 kcal Atomic # 6 Polarization: -10.42 SS G_CDS: 5.25 Total: -5.17 kcal Atomic # 7 Polarization: -111.99 SS G_CDS: -4.21 Total: -116.20 kcal Atomic # 8 Polarization: -22.47 SS G_CDS: -0.06 Total: -22.52 kcal Atomic # 14 Polarization: 51.66 SS G_CDS: 2.06 Total: 53.72 kcal Atomic # 16 Polarization: 4.00 SS G_CDS: -1.30 Total: 2.70 kcal Total: -73.54 2.37 -71.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001010470621.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.666 kcal (2) G-P(sol) polarization free energy of solvation -73.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.170 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds