Wall clock time and date at job start Tue Mar 31 2020 01:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32763 * 123.45876 * 2 1 4 4 S 1.75504 * 110.57722 * 180.02562 * 3 2 1 5 5 C 1.70449 * 92.44621 * 359.82300 * 4 3 2 6 6 C 1.36010 * 110.81195 * 0.31456 * 5 4 3 7 7 C 1.47189 * 123.45839 * 179.89750 * 6 5 4 8 8 O 1.21632 * 120.00053 * 179.70890 * 7 6 5 9 9 N 1.34779 * 120.00152 * 359.69938 * 7 6 5 10 10 C 1.46495 * 120.00474 * 179.97438 * 9 7 6 11 11 H 1.09001 * 110.91563 * 322.55956 * 10 9 7 12 12 C 1.55405 * 110.89523 * 198.69132 * 10 9 7 13 13 C 1.54325 * 102.82616 * 277.26785 * 12 10 9 14 14 N 1.47018 * 107.40412 * 337.97548 * 13 12 10 15 15 C 1.36936 * 125.64899 * 178.89496 * 14 13 12 16 16 H 1.08004 * 120.00261 * 179.97438 * 15 14 13 17 17 C 1.38814 * 120.00145 * 359.97438 * 15 14 13 18 18 N 1.31617 * 119.99550 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 120.00112 * 179.97438 * 17 15 14 20 20 H 1.48492 * 109.47084 * 60.00066 * 19 17 15 21 21 H 1.48498 * 109.46831 * 180.02562 * 19 17 15 22 22 H 1.48497 * 109.47190 * 299.99852 * 19 17 15 23 23 C 1.47426 * 108.70517 * 358.86539 * 14 13 12 24 24 H 1.09001 * 109.47414 * 269.97299 * 1 2 3 25 25 H 1.08998 * 109.47325 * 29.97874 * 1 2 3 26 26 H 1.09004 * 109.46680 * 149.97531 * 1 2 3 27 27 H 1.08006 * 124.71360 * 0.05986 * 3 2 1 28 28 H 1.07991 * 124.59288 * 180.21265 * 5 4 3 29 29 H 0.97004 * 119.99485 * 0.02562 * 9 7 6 30 30 H 1.09000 * 110.69068 * 158.98044 * 12 10 9 31 31 H 1.09002 * 110.85092 * 35.63038 * 12 10 9 32 32 H 1.09002 * 109.88192 * 218.47989 * 13 12 10 33 33 H 1.09000 * 109.88128 * 97.46841 * 13 12 10 34 34 H 0.97004 * 119.99606 * 179.97438 * 18 17 15 35 35 H 1.08999 * 110.36956 * 142.96999 * 23 14 13 36 36 H 1.09003 * 110.36599 * 265.28903 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2390 1.1076 0.0000 4 16 3.9498 0.7164 -0.0007 5 6 3.6411 -0.9599 0.0042 6 6 2.3033 -1.2049 -0.0007 7 6 1.7263 -2.5590 -0.0003 8 8 0.5188 -2.7055 0.0005 9 7 2.5358 -3.6366 -0.0010 10 6 1.9616 -4.9843 0.0000 11 1 1.0660 -5.0252 0.6200 12 6 3.0101 -6.0332 0.4642 13 6 3.8085 -6.3138 -0.8262 14 7 2.9555 -5.9352 -1.9622 15 6 3.3061 -6.0116 -3.2838 16 1 2.6046 -5.7082 -4.0469 17 6 4.5630 -6.4789 -3.6426 18 7 5.4176 -6.8490 -2.7126 19 14 5.0409 -6.5837 -5.4453 20 1 4.9735 -5.2313 -6.0547 21 1 6.4243 -7.1110 -5.5608 22 1 4.1045 -7.4930 -6.1536 23 6 1.6600 -5.4603 -1.4430 24 1 -0.3634 -0.0005 1.0277 25 1 -0.3634 0.8901 -0.5135 26 1 -0.3633 -0.8898 -0.5142 27 1 1.8374 2.1102 0.0009 28 1 4.4044 -1.7239 0.0088 29 1 3.4988 -3.5196 -0.0014 30 1 2.5179 -6.9391 0.8180 31 1 3.6582 -5.6184 1.2363 32 1 4.0563 -7.3736 -0.8858 33 1 4.7217 -5.7187 -0.8339 34 1 6.2958 -7.1759 -2.9633 35 1 1.2903 -4.6314 -2.0466 36 1 0.9351 -6.2742 -1.4303 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001010470623.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:25:31 Heat of formation + Delta-G solvation = 19.131373 kcal Electronic energy + Delta-G solvation = -19713.387567 eV Core-core repulsion = 16710.781211 eV Total energy + Delta-G solvation = -3002.606356 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -39.84667 -37.75423 -36.58137 -33.83277 -32.10429 -30.75242 -29.14628 -27.81846 -27.03584 -24.68998 -24.00401 -21.30816 -20.13630 -19.73276 -18.76129 -17.72969 -16.98099 -16.62712 -15.65859 -14.79593 -14.63148 -14.28082 -13.88384 -13.68289 -13.46611 -13.17047 -13.00644 -12.59560 -12.38529 -12.03385 -11.91757 -11.86863 -11.77468 -10.96815 -10.92602 -10.88613 -10.69387 -10.34358 -10.16729 -9.98499 -9.68354 -9.46919 -8.94597 -8.73626 -8.54921 -8.30901 -6.82447 -5.72620 -3.04854 0.77965 1.51984 1.88694 2.03787 3.40158 3.44540 3.45645 3.49187 3.62670 4.49967 4.66172 5.05733 5.17309 5.26921 5.35881 5.46502 5.47971 5.54594 5.69537 5.76701 5.78773 5.82949 6.00671 6.18727 6.22450 6.36562 6.46957 6.49737 6.60951 6.71472 7.06190 7.52046 7.54392 7.78249 7.89175 8.24371 8.55044 9.21718 9.81630 10.47480 11.39365 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.018459 B = 0.004942 C = 0.004451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1516.475199 B = 5664.008051 C = 6289.427054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.049 4.049 3 C -0.250 4.250 4 S 0.173 5.827 5 C -0.205 4.205 6 C -0.148 4.148 7 C 0.576 3.424 8 O -0.542 6.542 9 N -0.698 5.698 10 C 0.130 3.870 11 H 0.088 0.912 12 C -0.153 4.153 13 C 0.176 3.824 14 N -0.603 5.603 15 C -0.224 4.224 16 H 0.076 0.924 17 C -0.009 4.009 18 N -0.925 5.925 19 Si 0.911 3.089 20 H -0.286 1.286 21 H -0.290 1.290 22 H -0.285 1.285 23 C 0.125 3.875 24 H 0.070 0.930 25 H 0.060 0.940 26 H 0.094 0.906 27 H 0.166 0.834 28 H 0.171 0.829 29 H 0.400 0.600 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.044 0.956 33 H 0.045 0.955 34 H 0.252 0.748 35 H 0.043 0.957 36 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.471 13.706 9.032 16.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.060 4.060 3 C -0.385 4.385 4 S 0.440 5.560 5 C -0.343 4.343 6 C -0.166 4.166 7 C 0.362 3.638 8 O -0.421 6.421 9 N -0.347 5.347 10 C 0.025 3.975 11 H 0.106 0.894 12 C -0.192 4.192 13 C 0.051 3.949 14 N -0.330 5.330 15 C -0.352 4.352 16 H 0.094 0.906 17 C -0.205 4.205 18 N -0.573 5.573 19 Si 0.742 3.258 20 H -0.213 1.213 21 H -0.216 1.216 22 H -0.212 1.212 23 C -0.002 4.002 24 H 0.088 0.912 25 H 0.079 0.921 26 H 0.113 0.887 27 H 0.184 0.816 28 H 0.189 0.811 29 H 0.234 0.766 30 H 0.092 0.908 31 H 0.084 0.916 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -2.786 14.381 8.899 17.139 hybrid contribution -0.272 -0.992 -1.048 1.468 sum -3.057 13.389 7.851 15.819 Atomic orbital electron populations 1.20650 0.88741 1.03717 1.02728 1.19874 0.97534 0.89900 0.98735 1.25260 0.96392 1.02480 1.14327 1.82930 1.05763 0.97197 1.70077 1.25693 0.99856 1.02646 1.06129 1.20271 0.92044 0.94655 1.09671 1.17510 0.86393 0.83474 0.76472 1.90702 1.14017 1.86477 1.50953 1.45718 1.09945 1.05510 1.73551 1.22195 0.96580 0.80395 0.98363 0.89356 1.23264 0.98099 0.97679 1.00168 1.21163 0.91856 0.99743 0.82159 1.44457 1.10486 1.75750 1.02308 1.19017 0.97985 1.36728 0.81490 0.90624 1.24763 0.96536 1.01498 0.97670 1.69940 1.07197 1.49660 1.30492 0.86206 0.77394 0.77752 0.84477 1.21264 1.21608 1.21179 1.21940 0.89743 0.96427 0.92052 0.91181 0.92135 0.88736 0.81643 0.81128 0.76572 0.90823 0.91605 0.93756 0.93701 0.93788 0.93847 0.95427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.23 9.55 36.01 0.34 -0.89 16 2 C -0.05 -0.66 6.01 -104.06 -0.63 -1.28 16 3 C -0.25 -2.73 10.91 28.86 0.31 -2.41 16 4 S 0.17 1.79 23.02 -107.50 -2.48 -0.69 16 5 C -0.21 -2.60 10.38 29.93 0.31 -2.29 16 6 C -0.15 -2.20 5.98 -104.63 -0.63 -2.83 16 7 C 0.58 9.97 7.79 -12.62 -0.10 9.87 16 8 O -0.54 -10.52 13.95 5.25 0.07 -10.45 16 9 N -0.70 -11.85 5.19 -52.74 -0.27 -12.12 16 10 C 0.13 2.35 3.33 -65.65 -0.22 2.13 16 11 H 0.09 1.53 7.73 -51.93 -0.40 1.13 16 12 C -0.15 -2.70 6.54 -24.76 -0.16 -2.86 16 13 C 0.18 4.08 5.36 -3.07 -0.02 4.06 16 14 N -0.60 -15.23 3.39 -170.07 -0.58 -15.81 16 15 C -0.22 -6.26 10.28 -15.06 -0.15 -6.41 16 16 H 0.08 2.08 7.83 -52.48 -0.41 1.67 16 17 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 18 N -0.92 -26.67 10.31 55.49 0.57 -26.10 16 19 Si 0.91 22.18 29.55 -169.99 -5.02 17.15 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 23 C 0.13 2.71 6.93 -2.53 -0.02 2.70 16 24 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 25 H 0.06 0.61 8.13 -51.93 -0.42 0.18 16 26 H 0.09 1.41 6.03 -51.93 -0.31 1.09 16 27 H 0.17 1.36 8.06 -52.48 -0.42 0.94 16 28 H 0.17 1.95 7.01 -52.49 -0.37 1.58 16 29 H 0.40 6.35 7.11 -40.82 -0.29 6.06 16 30 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.04 1.15 7.51 -51.93 -0.39 0.76 16 33 H 0.04 1.13 7.37 -51.93 -0.38 0.75 16 34 H 0.25 7.10 8.31 -40.82 -0.34 6.77 16 35 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 36 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 311.07 15.07 4.69 4.69 Total: -1.00 -31.41 311.07 -8.71 -40.12 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -4.65 Total: 3.77 kcal Atomic # 6 Polarization: 0.49 SS G_CDS: -1.04 Total: -0.55 kcal Atomic # 7 Polarization: -53.76 SS G_CDS: -0.28 Total: -54.04 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.07 Total: -10.45 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.15 kcal Atomic # 16 Polarization: 1.79 SS G_CDS: -2.48 Total: -0.69 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.41 -8.71 -40.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001010470623.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.247 kcal (2) G-P(sol) polarization free energy of solvation -31.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.842 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds