Wall clock time and date at job start Tue Mar 31 2020 01:12:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.33821 * 124.52291 * 2 1 4 4 C 1.37469 * 115.10288 * 179.74206 * 3 2 1 5 5 C 1.36641 * 113.29470 * 0.49584 * 4 3 2 6 6 C 1.46587 * 125.45997 * 179.79837 * 5 4 3 7 7 O 1.21708 * 119.99609 * 359.71519 * 6 5 4 8 8 N 1.34772 * 120.00505 * 179.71484 * 6 5 4 9 9 C 1.47022 * 125.64566 * 359.97438 * 8 6 5 10 10 C 1.54322 * 107.27131 * 178.98048 * 9 8 6 11 11 C 1.55159 * 102.94499 * 337.80902 * 10 9 8 12 12 H 1.08997 * 111.00112 * 277.39164 * 11 10 9 13 13 N 1.46490 * 111.00840 * 153.57161 * 11 10 9 14 14 C 1.36935 * 120.00121 * 154.99548 * 13 11 10 15 15 H 1.07997 * 120.00139 * 0.02562 * 14 13 11 16 16 C 1.38816 * 120.00401 * 180.02562 * 14 13 11 17 17 N 1.31624 * 119.99569 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00172 * 180.02562 * 16 14 13 19 19 H 1.48508 * 109.46685 * 269.99637 * 18 16 14 20 20 H 1.48494 * 109.47357 * 29.99716 * 18 16 14 21 21 H 1.48502 * 109.47120 * 150.00435 * 18 16 14 22 22 C 1.47426 * 125.65079 * 180.02562 * 8 6 5 23 23 S 1.70617 * 124.52454 * 180.02562 * 2 1 3 24 24 H 1.09001 * 109.46968 * 180.02562 * 1 2 3 25 25 H 1.08991 * 109.47729 * 300.00437 * 1 2 3 26 26 H 1.08999 * 109.47211 * 60.00931 * 1 2 3 27 27 H 1.08007 * 122.44751 * 0.03658 * 3 2 1 28 28 H 1.08004 * 123.35093 * 180.28927 * 4 3 2 29 29 H 1.08997 * 109.88394 * 59.56466 * 9 8 6 30 30 H 1.08994 * 110.00900 * 298.47112 * 9 8 6 31 31 H 1.08998 * 110.72649 * 219.43940 * 10 9 8 32 32 H 1.09001 * 110.71965 * 96.16489 * 10 9 8 33 33 H 0.97000 * 120.00577 * 335.00148 * 13 11 10 34 34 H 0.97001 * 119.99885 * 359.97438 * 17 16 14 35 35 H 1.09006 * 110.36031 * 85.25000 * 22 8 6 36 36 H 1.08995 * 110.37034 * 322.93422 * 22 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2654 1.1025 0.0000 4 6 3.6215 0.8776 0.0056 5 6 3.9492 -0.4490 -0.0007 6 6 5.3123 -0.9882 -0.0011 7 8 6.2659 -0.2319 -0.0008 8 7 5.5097 -2.3214 -0.0018 9 6 4.4533 -3.3439 -0.0017 10 6 5.1488 -4.7213 -0.0289 11 6 6.5478 -4.3927 -0.6139 12 1 6.5143 -4.3431 -1.7022 13 7 7.5463 -5.3663 -0.1657 14 6 8.6700 -5.5894 -0.9159 15 1 8.8203 -5.0472 -1.8377 16 6 9.6160 -6.5124 -0.4916 17 7 9.4326 -7.1736 0.6317 18 14 11.1492 -6.8162 -1.5146 19 1 10.8863 -7.9058 -2.4888 20 1 11.5104 -5.5751 -2.2455 21 1 12.2695 -7.2094 -0.6227 22 6 6.8206 -2.9959 -0.0018 23 16 2.4739 -1.4057 -0.0006 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8898 26 1 -0.3633 0.5137 -0.8901 27 1 1.8428 2.0965 0.0006 28 1 4.3549 1.6704 0.0109 29 1 3.8253 -3.2283 -0.8850 30 1 3.8463 -3.2529 0.8990 31 1 4.6115 -5.4119 -0.6788 32 1 5.2380 -5.1282 0.9783 33 1 7.4116 -5.8532 0.6623 34 1 8.6366 -7.0156 1.1631 35 1 7.1962 -3.0948 1.0167 36 1 7.5312 -2.4442 -0.6171 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001018432807.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:12 Heat of formation + Delta-G solvation = -10.775717 kcal Electronic energy + Delta-G solvation = -19129.095634 eV Core-core repulsion = 16125.192409 eV Total energy + Delta-G solvation = -3003.903225 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.22828 -39.30915 -38.34034 -36.34505 -33.63651 -32.83639 -31.16332 -29.69716 -27.85710 -25.83916 -24.71836 -23.93439 -22.27827 -21.60289 -19.70471 -19.37397 -19.12105 -17.49213 -17.07012 -16.91152 -16.43951 -15.92081 -15.64456 -15.30472 -14.88017 -14.81066 -14.45397 -14.07992 -13.95373 -13.88082 -13.32896 -13.11020 -12.96506 -12.86171 -12.74428 -12.67827 -12.39844 -11.90292 -11.85790 -11.62300 -11.35338 -11.24810 -11.02088 -10.04936 -9.59471 -9.48546 -9.21588 -8.42781 -5.39411 -0.54361 0.45080 0.90737 1.32463 1.58466 1.68346 1.74862 1.83064 2.06630 2.68619 3.28704 3.42741 3.44147 3.76612 3.86021 3.96352 4.03643 4.16776 4.26528 4.35062 4.37899 4.46318 4.67163 4.68344 4.76431 4.80920 4.95453 5.04801 5.07930 5.10986 5.18197 5.23325 5.41447 5.57716 6.30989 6.47452 6.87942 7.02927 7.91992 8.01579 9.08905 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.040938 B = 0.003570 C = 0.003371 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.803185 B = 7840.979351 C = 8305.003875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.200 4.200 3 C -0.170 4.170 4 C -0.053 4.053 5 C -0.308 4.308 6 C 0.592 3.408 7 O -0.587 6.587 8 N -0.611 5.611 9 C 0.094 3.906 10 C -0.124 4.124 11 C 0.172 3.828 12 H 0.066 0.934 13 N -0.733 5.733 14 C -0.339 4.339 15 H 0.066 0.934 16 C -0.096 4.096 17 N -0.971 5.971 18 Si 1.128 2.872 19 H -0.280 1.280 20 H -0.278 1.278 21 H -0.293 1.293 22 C 0.094 3.906 23 S 0.256 5.744 24 H 0.080 0.920 25 H 0.093 0.907 26 H 0.093 0.907 27 H 0.165 0.835 28 H 0.143 0.857 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.108 0.892 32 H 0.080 0.920 33 H 0.366 0.634 34 H 0.247 0.753 35 H 0.050 0.950 36 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.369 12.525 -1.695 26.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.320 4.320 3 C -0.199 4.199 4 C -0.087 4.087 5 C -0.428 4.428 6 C 0.383 3.617 7 O -0.470 6.470 8 N -0.343 5.343 9 C -0.030 4.030 10 C -0.162 4.162 11 C 0.061 3.939 12 H 0.084 0.916 13 N -0.374 5.374 14 C -0.470 4.470 15 H 0.084 0.916 16 C -0.288 4.288 17 N -0.618 5.618 18 Si 0.952 3.048 19 H -0.207 1.207 20 H -0.203 1.203 21 H -0.220 1.220 22 C -0.032 4.032 23 S 0.525 5.475 24 H 0.098 0.902 25 H 0.111 0.889 26 H 0.111 0.889 27 H 0.183 0.817 28 H 0.161 0.839 29 H 0.113 0.887 30 H 0.112 0.888 31 H 0.127 0.873 32 H 0.099 0.901 33 H 0.199 0.801 34 H 0.058 0.942 35 H 0.068 0.932 36 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -21.774 10.656 -2.008 24.325 hybrid contribution -0.455 2.506 0.604 2.618 sum -22.229 13.162 -1.404 25.872 Atomic orbital electron populations 1.20544 0.84951 1.04353 1.04610 1.25111 1.03493 0.98593 1.04775 1.20061 0.91315 1.01150 1.07345 1.20911 0.97485 0.94585 0.95740 1.24336 0.96416 0.99359 1.22676 1.17173 0.87988 0.80599 0.75941 1.90780 1.44085 1.58287 1.53847 1.48375 1.09313 1.04675 1.71949 1.22322 0.89944 0.86916 1.03782 1.22862 0.94715 0.95585 1.03056 1.21393 0.89049 0.86329 0.97167 0.91565 1.42411 1.22125 1.46383 1.26432 1.20394 0.99845 1.21880 1.04899 0.91640 1.27142 1.05457 0.96091 1.00151 1.70966 1.29967 1.45262 1.15646 0.82618 0.72221 0.76328 0.73590 1.20657 1.20342 1.21967 1.23013 0.84397 0.95512 1.00273 1.83061 0.91354 1.06008 1.67064 0.90151 0.88880 0.88855 0.81722 0.83948 0.88656 0.88761 0.87337 0.90125 0.80066 0.94210 0.93185 0.93496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.65 10.33 71.23 0.74 0.09 16 2 C -0.20 -2.96 6.28 24.68 0.15 -2.81 16 3 C -0.17 -2.90 9.99 21.08 0.21 -2.69 16 4 C -0.05 -1.26 10.01 21.71 0.22 -1.04 16 5 C -0.31 -8.35 6.38 24.08 0.15 -8.20 16 6 C 0.59 21.21 7.82 86.42 0.68 21.88 16 7 O -0.59 -26.00 17.10 -4.37 -0.07 -26.07 16 8 N -0.61 -20.45 3.33 -816.59 -2.72 -23.17 16 9 C 0.09 2.27 5.17 86.73 0.45 2.72 16 10 C -0.12 -3.41 6.60 31.78 0.21 -3.20 16 11 C 0.17 6.64 3.71 46.39 0.17 6.81 16 12 H 0.07 2.63 8.09 -2.39 -0.02 2.61 16 13 N -0.73 -35.81 5.24 -316.38 -1.66 -37.47 16 14 C -0.34 -18.85 9.96 84.03 0.84 -18.01 16 15 H 0.07 3.60 7.83 -2.91 -0.02 3.58 16 16 C -0.10 -5.55 5.50 84.86 0.47 -5.08 16 17 N -0.97 -59.80 13.70 21.65 0.30 -59.51 16 18 Si 1.13 52.02 29.92 68.60 2.05 54.07 16 19 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 20 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 21 H -0.29 -13.74 7.11 99.48 0.71 -13.04 16 22 C 0.09 3.77 6.60 86.86 0.57 4.34 16 23 S 0.26 4.52 18.36 -56.49 -1.04 3.48 16 24 H 0.08 0.46 8.11 -2.39 -0.02 0.44 16 25 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 26 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 27 H 0.17 1.94 8.06 -2.91 -0.02 1.92 16 28 H 0.14 3.52 8.06 -2.91 -0.02 3.49 16 29 H 0.10 1.89 6.83 -2.39 -0.02 1.88 16 30 H 0.09 1.88 6.98 -2.39 -0.02 1.87 16 31 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 32 H 0.08 2.22 8.00 -2.39 -0.02 2.21 16 33 H 0.37 18.34 6.60 -92.71 -0.61 17.73 16 34 H 0.25 15.01 6.77 -92.71 -0.63 14.38 16 35 H 0.05 2.16 8.14 -2.38 -0.02 2.14 16 36 H 0.05 2.10 8.04 -2.39 -0.02 2.08 16 Total: -1.00 -74.19 313.25 2.34 -71.85 By element: Atomic # 1 Polarization: 21.39 SS G_CDS: 0.62 Total: 22.02 kcal Atomic # 6 Polarization: -10.05 SS G_CDS: 4.86 Total: -5.20 kcal Atomic # 7 Polarization: -116.07 SS G_CDS: -4.08 Total: -120.15 kcal Atomic # 8 Polarization: -26.00 SS G_CDS: -0.07 Total: -26.07 kcal Atomic # 14 Polarization: 52.02 SS G_CDS: 2.05 Total: 54.07 kcal Atomic # 16 Polarization: 4.52 SS G_CDS: -1.04 Total: 3.48 kcal Total: -74.19 2.34 -71.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018432807.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.075 kcal (2) G-P(sol) polarization free energy of solvation -74.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds