Wall clock time and date at job start Tue Mar 31 2020 01:12:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 S 1.70441 * 124.59196 * 2 1 4 4 C 1.75510 * 92.44242 * 180.26898 * 3 2 1 5 5 C 1.32768 * 110.57721 * 0.02562 * 4 3 2 6 6 C 1.36012 * 124.58811 * 180.30964 * 2 1 3 7 7 C 1.47188 * 123.45897 * 359.75290 * 6 2 1 8 8 O 1.21635 * 120.00649 * 353.85396 * 7 6 2 9 9 N 1.34782 * 120.00049 * 173.86102 * 7 6 2 10 10 C 1.47025 * 125.64560 * 4.91302 * 9 7 6 11 11 C 1.54330 * 107.26450 * 178.85100 * 10 9 7 12 12 C 1.55154 * 103.02167 * 338.13760 * 11 10 9 13 13 H 1.08992 * 111.00465 * 277.23469 * 12 11 10 14 14 N 1.46499 * 111.00489 * 153.38134 * 12 11 10 15 15 C 1.36933 * 120.00353 * 161.35003 * 14 12 11 16 16 H 1.08000 * 119.99673 * 0.02562 * 15 14 12 17 17 C 1.38816 * 120.00284 * 180.02562 * 15 14 12 18 18 N 1.31613 * 119.99868 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99887 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47157 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46685 * 120.00012 * 19 17 15 22 22 H 1.48499 * 109.46817 * 239.99943 * 19 17 15 23 23 C 1.47424 * 125.65262 * 185.22059 * 9 7 6 24 24 H 1.09004 * 109.47044 * 269.69466 * 1 2 3 25 25 H 1.09001 * 109.46976 * 29.68678 * 1 2 3 26 26 H 1.08998 * 109.47105 * 149.69140 * 1 2 3 27 27 H 1.08001 * 124.71187 * 180.02562 * 4 3 2 28 28 H 1.07996 * 123.45915 * 180.02562 * 5 4 3 29 29 H 1.09002 * 109.87947 * 298.39821 * 10 9 7 30 30 H 1.09004 * 109.88396 * 59.55748 * 10 9 7 31 31 H 1.09001 * 110.84725 * 219.66848 * 11 10 9 32 32 H 1.09001 * 110.51638 * 96.45078 * 11 10 9 33 33 H 0.97006 * 120.00030 * 341.35251 * 14 12 11 34 34 H 0.96996 * 120.00030 * 180.02562 * 18 17 15 35 35 H 1.09003 * 110.36433 * 322.92974 * 23 9 7 36 36 H 1.09000 * 110.36576 * 85.14115 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4747 1.4031 0.0000 4 6 3.9606 0.4692 -0.0082 5 6 3.6943 -0.8315 -0.0112 6 6 2.2791 -1.1197 -0.0061 7 6 1.7289 -2.4849 -0.0081 8 8 0.5306 -2.6579 0.1084 9 7 2.5529 -3.5434 -0.1390 10 6 4.0213 -3.4856 -0.1853 11 6 4.5330 -4.9360 -0.3131 12 6 3.3455 -5.7746 0.2290 13 1 3.3669 -5.8239 1.3176 14 7 3.3414 -7.1181 -0.3553 15 6 2.6374 -8.1253 0.2487 16 1 2.0848 -7.9292 1.1556 17 6 2.6339 -9.3984 -0.3047 18 7 3.3078 -9.6374 -1.4097 19 14 1.6728 -10.7722 0.5189 20 1 1.0058 -10.2480 1.7377 21 1 0.6475 -11.2916 -0.4214 22 1 2.6008 -11.8690 0.8947 23 6 2.1310 -4.9503 -0.2658 24 1 -0.3633 -0.0055 1.0277 25 1 -0.3633 0.8928 -0.5090 26 1 -0.3633 -0.8872 -0.5186 27 1 4.9538 0.8936 -0.0105 28 1 4.4575 -1.5956 -0.0159 29 1 4.3422 -2.8999 -1.0468 30 1 4.4039 -3.0390 0.7325 31 1 5.4232 -5.0884 0.2971 32 1 4.7329 -5.1800 -1.3565 33 1 3.8375 -7.2941 -1.1701 34 1 3.3051 -10.5269 -1.7966 35 1 1.2606 -5.1433 0.3613 36 1 1.9081 -5.1871 -1.3062 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001018817919.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:15 Heat of formation + Delta-G solvation = 23.076476 kcal Electronic energy + Delta-G solvation = -19374.733884 eV Core-core repulsion = 16372.298601 eV Total energy + Delta-G solvation = -3002.435284 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.12558 -37.67806 -36.70912 -34.20002 -32.10513 -31.48355 -29.71163 -28.27292 -26.83194 -24.30844 -23.28885 -22.89728 -20.53419 -20.10080 -18.93351 -17.33359 -17.26420 -16.01572 -15.99417 -15.46695 -14.72255 -14.42065 -14.09291 -13.71201 -13.52582 -13.38627 -13.11748 -12.74328 -12.67727 -12.41971 -12.25227 -12.11836 -11.72489 -11.48904 -11.14905 -10.99048 -10.77149 -10.67026 -10.31402 -10.00834 -9.78710 -9.58204 -9.03169 -8.94484 -8.62397 -8.27556 -7.08713 -5.84724 -3.15404 0.69954 1.35685 1.74792 1.94368 3.29986 3.41063 3.45760 3.47813 3.49510 4.53263 4.56344 4.67389 4.89057 4.97052 5.13800 5.18404 5.30454 5.40103 5.49270 5.54926 5.63848 5.74067 5.82987 5.86440 5.92276 6.11150 6.15098 6.16612 6.24519 6.36418 6.53723 6.63942 6.88033 7.66284 7.78975 8.32697 8.39150 9.45174 9.97972 10.32959 11.37439 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.037513 B = 0.003601 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.221104 B = 7773.066115 C = 8344.375674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.141 4.141 3 S 0.160 5.840 4 C -0.238 4.238 5 C -0.124 4.124 6 C -0.167 4.167 7 C 0.588 3.412 8 O -0.542 6.542 9 N -0.607 5.607 10 C 0.098 3.902 11 C -0.143 4.143 12 C 0.172 3.828 13 H 0.065 0.935 14 N -0.712 5.712 15 C -0.247 4.247 16 H 0.073 0.927 17 C -0.009 4.009 18 N -0.930 5.930 19 Si 0.908 3.092 20 H -0.279 1.279 21 H -0.290 1.290 22 H -0.291 1.291 23 C 0.083 3.917 24 H 0.080 0.920 25 H 0.064 0.936 26 H 0.101 0.899 27 H 0.167 0.833 28 H 0.169 0.831 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.387 0.613 34 H 0.256 0.744 35 H 0.072 0.928 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.805 22.454 2.117 22.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.261 4.261 3 S 0.425 5.575 4 C -0.372 4.372 5 C -0.153 4.153 6 C -0.183 4.183 7 C 0.376 3.624 8 O -0.422 6.422 9 N -0.340 5.340 10 C -0.025 4.025 11 C -0.181 4.181 12 C 0.060 3.940 13 H 0.082 0.918 14 N -0.352 5.352 15 C -0.378 4.378 16 H 0.091 0.909 17 C -0.205 4.205 18 N -0.578 5.578 19 Si 0.739 3.261 20 H -0.204 1.204 21 H -0.217 1.217 22 H -0.218 1.218 23 C -0.042 4.042 24 H 0.098 0.902 25 H 0.083 0.917 26 H 0.120 0.880 27 H 0.185 0.815 28 H 0.186 0.814 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.097 0.903 33 H 0.222 0.778 34 H 0.066 0.934 35 H 0.091 0.909 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.748 23.800 2.297 23.974 hybrid contribution 0.104 -2.336 0.041 2.339 sum 1.852 21.463 2.338 21.670 Atomic orbital electron populations 1.20592 0.86793 1.04011 1.03601 1.24497 1.01760 0.96670 1.03184 1.82957 0.95591 1.07888 1.71042 1.25426 1.01984 0.97185 1.12634 1.22182 0.95555 0.96999 1.00543 1.20198 0.92805 0.93737 1.11593 1.17218 0.85411 0.82891 0.76886 1.90732 1.14641 1.85650 1.51135 1.48333 1.06727 1.07569 1.71342 1.22413 0.80812 0.98589 1.00692 1.22963 0.99510 0.92845 1.02818 1.21306 0.90384 0.85504 0.96827 0.91752 1.42310 1.59358 1.03240 1.30310 1.19311 1.23327 0.88801 1.06385 0.90859 1.24766 1.00473 0.97691 0.97591 1.69664 1.45539 1.21445 1.21143 0.86101 0.79229 0.82194 0.78574 1.20399 1.21737 1.21766 1.23430 1.01154 0.77766 1.01864 0.90187 0.91745 0.88011 0.81536 0.81390 0.91234 0.91182 0.90053 0.90340 0.77843 0.93396 0.90910 0.91370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.07 9.52 36.01 0.34 -0.72 16 2 C -0.14 -1.74 6.34 -35.11 -0.22 -1.96 16 3 S 0.16 1.47 22.97 -107.50 -2.47 -1.00 16 4 C -0.24 -2.15 11.12 28.86 0.32 -1.83 16 5 C -0.12 -1.36 8.86 -39.02 -0.35 -1.71 16 6 C -0.17 -2.32 5.96 -104.63 -0.62 -2.94 16 7 C 0.59 10.04 7.80 -12.62 -0.10 9.94 16 8 O -0.54 -10.77 14.38 5.25 0.08 -10.70 16 9 N -0.61 -9.93 3.33 -171.86 -0.57 -10.50 16 10 C 0.10 1.25 4.91 -3.06 -0.02 1.23 16 11 C -0.14 -2.08 6.57 -24.89 -0.16 -2.24 16 12 C 0.17 3.29 3.69 -65.79 -0.24 3.05 16 13 H 0.06 1.26 8.13 -51.93 -0.42 0.84 16 14 N -0.71 -17.17 5.28 -51.36 -0.27 -17.44 16 15 C -0.25 -6.71 9.98 -15.06 -0.15 -6.86 16 16 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 17 C -0.01 -0.25 5.50 -17.43 -0.10 -0.34 16 18 N -0.93 -27.46 13.06 55.49 0.72 -26.74 16 19 Si 0.91 22.16 29.55 -169.99 -5.02 17.14 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 21 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 22 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 23 C 0.08 1.58 6.62 -2.53 -0.02 1.57 16 24 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.10 1.43 6.11 -51.93 -0.32 1.11 16 27 H 0.17 1.04 8.06 -52.49 -0.42 0.62 16 28 H 0.17 1.58 3.80 -52.49 -0.20 1.38 16 29 H 0.07 0.76 6.79 -51.93 -0.35 0.41 16 30 H 0.07 0.76 6.79 -51.93 -0.35 0.41 16 31 H 0.08 1.06 8.14 -51.93 -0.42 0.63 16 32 H 0.08 1.16 8.00 -51.93 -0.42 0.75 16 33 H 0.39 9.81 7.71 -40.82 -0.31 9.50 16 34 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 35 H 0.07 1.52 7.99 -51.93 -0.41 1.10 16 36 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 LS Contribution 308.84 15.07 4.65 4.65 Total: -1.00 -31.57 308.84 -8.64 -40.21 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: -4.45 Total: 7.19 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: -1.31 Total: -2.82 kcal Atomic # 7 Polarization: -54.55 SS G_CDS: -0.12 Total: -54.67 kcal Atomic # 8 Polarization: -10.77 SS G_CDS: 0.08 Total: -10.70 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Atomic # 16 Polarization: 1.47 SS G_CDS: -2.47 Total: -1.00 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -31.57 -8.64 -40.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018817919.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.290 kcal (2) G-P(sol) polarization free energy of solvation -31.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.213 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds