Wall clock time and date at job start Tue Mar 31 2020 01:12:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 S 1.70441 * 124.59196 * 2 1 4 4 C 1.75510 * 92.44242 * 180.26898 * 3 2 1 5 5 C 1.32768 * 110.57721 * 0.02562 * 4 3 2 6 6 C 1.36012 * 124.58811 * 180.30964 * 2 1 3 7 7 C 1.47188 * 123.45897 * 359.75290 * 6 2 1 8 8 O 1.21635 * 120.00649 * 353.85396 * 7 6 2 9 9 N 1.34782 * 120.00049 * 173.86102 * 7 6 2 10 10 C 1.47025 * 125.64560 * 4.91302 * 9 7 6 11 11 C 1.54330 * 107.26450 * 178.85100 * 10 9 7 12 12 C 1.55154 * 103.02167 * 338.13760 * 11 10 9 13 13 H 1.08992 * 111.00465 * 277.23469 * 12 11 10 14 14 N 1.46499 * 111.00489 * 153.38134 * 12 11 10 15 15 C 1.36933 * 120.00353 * 161.35003 * 14 12 11 16 16 H 1.08000 * 119.99673 * 0.02562 * 15 14 12 17 17 C 1.38816 * 120.00284 * 180.02562 * 15 14 12 18 18 N 1.31613 * 119.99868 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 119.99887 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47157 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46685 * 120.00012 * 19 17 15 22 22 H 1.48499 * 109.46817 * 239.99943 * 19 17 15 23 23 C 1.47424 * 125.65262 * 185.22059 * 9 7 6 24 24 H 1.09004 * 109.47044 * 269.69466 * 1 2 3 25 25 H 1.09001 * 109.46976 * 29.68678 * 1 2 3 26 26 H 1.08998 * 109.47105 * 149.69140 * 1 2 3 27 27 H 1.08001 * 124.71187 * 180.02562 * 4 3 2 28 28 H 1.07996 * 123.45915 * 180.02562 * 5 4 3 29 29 H 1.09002 * 109.87947 * 298.39821 * 10 9 7 30 30 H 1.09004 * 109.88396 * 59.55748 * 10 9 7 31 31 H 1.09001 * 110.84725 * 219.66848 * 11 10 9 32 32 H 1.09001 * 110.51638 * 96.45078 * 11 10 9 33 33 H 0.97006 * 120.00030 * 341.35251 * 14 12 11 34 34 H 0.96996 * 120.00030 * 180.02562 * 18 17 15 35 35 H 1.09003 * 110.36433 * 322.92974 * 23 9 7 36 36 H 1.09000 * 110.36576 * 85.14115 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4747 1.4031 0.0000 4 6 3.9606 0.4692 -0.0082 5 6 3.6943 -0.8315 -0.0112 6 6 2.2791 -1.1197 -0.0061 7 6 1.7289 -2.4849 -0.0081 8 8 0.5306 -2.6579 0.1084 9 7 2.5529 -3.5434 -0.1390 10 6 4.0213 -3.4856 -0.1853 11 6 4.5330 -4.9360 -0.3131 12 6 3.3455 -5.7746 0.2290 13 1 3.3669 -5.8239 1.3176 14 7 3.3414 -7.1181 -0.3553 15 6 2.6374 -8.1253 0.2487 16 1 2.0848 -7.9292 1.1556 17 6 2.6339 -9.3984 -0.3047 18 7 3.3078 -9.6374 -1.4097 19 14 1.6728 -10.7722 0.5189 20 1 1.0058 -10.2480 1.7377 21 1 0.6475 -11.2916 -0.4214 22 1 2.6008 -11.8690 0.8947 23 6 2.1310 -4.9503 -0.2658 24 1 -0.3633 -0.0055 1.0277 25 1 -0.3633 0.8928 -0.5090 26 1 -0.3633 -0.8872 -0.5186 27 1 4.9538 0.8936 -0.0105 28 1 4.4575 -1.5956 -0.0159 29 1 4.3422 -2.8999 -1.0468 30 1 4.4039 -3.0390 0.7325 31 1 5.4232 -5.0884 0.2971 32 1 4.7329 -5.1800 -1.3565 33 1 3.8375 -7.2941 -1.1701 34 1 3.3051 -10.5269 -1.7966 35 1 1.2606 -5.1433 0.3613 36 1 1.9081 -5.1871 -1.3062 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001018817919.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:14 Heat of formation + Delta-G solvation = 2.411301 kcal Electronic energy + Delta-G solvation = -19375.629993 eV Core-core repulsion = 16372.298601 eV Total energy + Delta-G solvation = -3003.331393 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.35740 -38.96604 -37.79915 -36.00005 -33.46863 -32.78817 -31.20570 -29.68544 -27.97525 -25.98264 -24.41037 -24.25864 -21.66825 -21.46662 -20.13508 -19.26194 -18.16289 -17.43238 -17.16145 -16.66608 -16.35466 -15.77676 -15.31086 -15.20644 -14.79004 -14.60926 -14.35248 -14.15388 -13.81642 -13.68312 -13.54742 -13.06270 -13.04206 -12.91288 -12.64068 -12.48326 -12.32258 -12.06952 -11.88027 -11.71165 -11.48357 -11.05408 -10.84615 -9.90134 -9.57288 -9.35144 -9.08730 -7.99115 -5.28991 -0.20288 0.56587 0.97111 1.04137 1.46288 1.47671 1.57168 2.03150 2.28716 2.54335 3.32052 3.59591 3.62286 3.75287 3.93437 4.04205 4.19278 4.24832 4.32880 4.42575 4.51142 4.59615 4.62513 4.70289 4.82221 4.93647 4.97988 5.08345 5.17717 5.23158 5.26397 5.33093 5.36819 5.51454 6.23166 6.53153 7.09798 7.30545 8.01450 8.26189 9.23769 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.037513 B = 0.003601 C = 0.003355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 746.221104 B = 7773.066115 C = 8344.375674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.164 4.164 3 S 0.224 5.776 4 C -0.226 4.226 5 C -0.138 4.138 6 C -0.193 4.193 7 C 0.578 3.422 8 O -0.586 6.586 9 N -0.609 5.609 10 C 0.100 3.900 11 C -0.130 4.130 12 C 0.166 3.834 13 H 0.061 0.939 14 N -0.723 5.723 15 C -0.248 4.248 16 H 0.073 0.927 17 C -0.067 4.067 18 N -0.964 5.964 19 Si 0.969 3.031 20 H -0.269 1.269 21 H -0.294 1.294 22 H -0.289 1.289 23 C 0.094 3.906 24 H 0.079 0.921 25 H 0.090 0.910 26 H 0.069 0.931 27 H 0.203 0.797 28 H 0.184 0.816 29 H 0.097 0.903 30 H 0.100 0.900 31 H 0.105 0.895 32 H 0.076 0.924 33 H 0.379 0.621 34 H 0.253 0.747 35 H 0.043 0.957 36 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.634 25.193 2.790 25.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.285 4.285 3 S 0.490 5.510 4 C -0.361 4.361 5 C -0.165 4.165 6 C -0.210 4.210 7 C 0.369 3.631 8 O -0.468 6.468 9 N -0.341 5.341 10 C -0.021 4.021 11 C -0.168 4.168 12 C 0.055 3.945 13 H 0.079 0.921 14 N -0.362 5.362 15 C -0.380 4.380 16 H 0.091 0.909 17 C -0.260 4.260 18 N -0.614 5.614 19 Si 0.798 3.202 20 H -0.194 1.194 21 H -0.222 1.222 22 H -0.216 1.216 23 C -0.032 4.032 24 H 0.098 0.902 25 H 0.108 0.892 26 H 0.088 0.912 27 H 0.220 0.780 28 H 0.201 0.799 29 H 0.115 0.885 30 H 0.118 0.882 31 H 0.124 0.876 32 H 0.095 0.905 33 H 0.212 0.788 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 3.603 26.595 2.995 27.005 hybrid contribution -0.491 -3.003 -0.153 3.047 sum 3.112 23.592 2.842 23.965 Atomic orbital electron populations 1.20535 0.87172 1.03738 1.03472 1.24789 1.02358 0.98359 1.03001 1.82771 0.94368 1.05084 1.68818 1.25898 1.03560 0.96538 1.10112 1.22200 0.94072 0.98342 1.01925 1.20134 0.94747 0.91851 1.14282 1.17880 0.85012 0.84292 0.75956 1.90702 1.16572 1.86471 1.53100 1.48360 1.08460 1.06048 1.71233 1.22679 0.78252 0.97730 1.03456 1.22909 0.98291 0.92781 1.02823 1.21454 0.92586 0.83942 0.96525 0.92058 1.42421 1.58978 1.04688 1.30110 1.19623 1.22620 0.89662 1.06061 0.90934 1.25507 1.02054 0.99952 0.98497 1.69793 1.47349 1.21630 1.22621 0.85140 0.77798 0.79428 0.77787 1.19397 1.22170 1.21557 1.22978 1.00186 0.80232 0.99828 0.90240 0.89159 0.91187 0.78003 0.79935 0.88479 0.88228 0.87627 0.90549 0.78800 0.93823 0.93795 0.93473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.11 9.52 71.24 0.68 -1.43 16 2 C -0.16 -3.83 6.34 25.17 0.16 -3.67 16 3 S 0.22 3.29 22.97 -56.49 -1.30 1.99 16 4 C -0.23 -3.04 11.12 66.64 0.74 -2.30 16 5 C -0.14 -2.54 8.86 22.67 0.20 -2.34 16 6 C -0.19 -5.11 5.96 -19.87 -0.12 -5.23 16 7 C 0.58 20.09 7.80 86.59 0.68 20.77 16 8 O -0.59 -24.64 14.38 -4.14 -0.06 -24.70 16 9 N -0.61 -19.89 3.33 -815.89 -2.71 -22.60 16 10 C 0.10 2.30 4.91 86.73 0.43 2.73 16 11 C -0.13 -3.54 6.57 31.78 0.21 -3.33 16 12 C 0.17 6.37 3.69 46.38 0.17 6.55 16 13 H 0.06 2.40 8.13 -2.39 -0.02 2.38 16 14 N -0.72 -35.54 5.28 -316.39 -1.67 -37.21 16 15 C -0.25 -13.71 9.98 84.04 0.84 -12.87 16 16 H 0.07 3.94 7.83 -2.91 -0.02 3.91 16 17 C -0.07 -3.83 5.50 84.86 0.47 -3.36 16 18 N -0.96 -58.05 13.06 21.65 0.28 -57.76 16 19 Si 0.97 46.25 29.55 68.60 2.03 48.28 16 20 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 21 H -0.29 -14.14 7.11 99.48 0.71 -13.43 16 22 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 23 C 0.09 3.74 6.62 86.85 0.58 4.32 16 24 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 25 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 26 H 0.07 2.09 6.11 -2.39 -0.01 2.08 16 27 H 0.20 1.26 8.06 -2.91 -0.02 1.24 16 28 H 0.18 2.63 3.80 -2.91 -0.01 2.62 16 29 H 0.10 1.77 6.79 -2.39 -0.02 1.76 16 30 H 0.10 1.76 6.79 -2.38 -0.02 1.75 16 31 H 0.11 2.41 8.14 -2.39 -0.02 2.39 16 32 H 0.08 2.15 8.00 -2.39 -0.02 2.13 16 33 H 0.38 19.65 7.71 -92.70 -0.71 18.93 16 34 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 35 H 0.04 1.95 7.99 -2.39 -0.02 1.94 16 36 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -71.64 308.84 1.99 -69.65 By element: Atomic # 1 Polarization: 22.12 SS G_CDS: 0.40 Total: 22.52 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: 5.02 Total: -0.17 kcal Atomic # 7 Polarization: -113.47 SS G_CDS: -4.10 Total: -117.57 kcal Atomic # 8 Polarization: -24.64 SS G_CDS: -0.06 Total: -24.70 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.28 kcal Atomic # 16 Polarization: 3.29 SS G_CDS: -1.30 Total: 1.99 kcal Total: -71.64 1.99 -69.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001018817919.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.066 kcal (2) G-P(sol) polarization free energy of solvation -71.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.655 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds