Wall clock time and date at job start Tue Mar 31 2020 01:19:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.32772 * 123.45714 * 2 1 4 4 S 1.75506 * 110.57234 * 179.97438 * 3 2 1 5 5 C 1.70448 * 92.44768 * 359.97438 * 4 3 2 6 6 C 1.36011 * 110.81640 * 0.02562 * 5 4 3 7 7 C 1.47184 * 123.46085 * 180.02562 * 6 5 4 8 8 O 1.21632 * 120.00024 * 179.97438 * 7 6 5 9 9 N 1.34777 * 119.99816 * 359.97438 * 7 6 5 10 10 C 1.46504 * 119.99913 * 180.02562 * 9 7 6 11 11 H 1.09000 * 112.84728 * 25.33050 * 10 9 7 12 12 C 1.53779 * 113.61745 * 156.52982 * 10 9 7 13 13 C 1.53780 * 87.08292 * 139.97880 * 12 10 9 14 14 H 1.09000 * 113.61180 * 219.93125 * 13 12 10 15 15 N 1.46501 * 113.61388 * 89.11638 * 13 12 10 16 16 C 1.36931 * 119.99885 * 154.99786 * 15 13 12 17 17 H 1.08008 * 119.99899 * 0.02562 * 16 15 13 18 18 C 1.38812 * 120.00303 * 179.97438 * 16 15 13 19 19 N 1.31622 * 119.99638 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00470 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.46990 * 90.00330 * 20 18 16 22 22 H 1.48499 * 109.47568 * 209.99960 * 20 18 16 23 23 H 1.48505 * 109.47073 * 330.00413 * 20 18 16 24 24 C 1.53784 * 113.61300 * 254.13404 * 10 9 7 25 25 H 1.08997 * 109.47628 * 270.00576 * 1 2 3 26 26 H 1.08994 * 109.47095 * 30.00358 * 1 2 3 27 27 H 1.09006 * 109.47322 * 150.00175 * 1 2 3 28 28 H 1.07994 * 124.71193 * 0.02562 * 3 2 1 29 29 H 1.08000 * 124.58684 * 179.97438 * 5 4 3 30 30 H 0.96997 * 120.00267 * 359.97438 * 9 7 6 31 31 H 1.09000 * 113.61340 * 254.53049 * 12 10 9 32 32 H 1.09007 * 113.61308 * 25.34253 * 12 10 9 33 33 H 0.96996 * 120.00070 * 335.00062 * 15 13 12 34 34 H 0.97001 * 120.00137 * 180.02562 * 19 18 16 35 35 H 1.08996 * 113.61290 * 334.56996 * 24 10 9 36 36 H 1.09004 * 113.61154 * 105.46623 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2389 1.1077 0.0000 4 16 3.9498 0.7164 0.0007 5 6 3.6410 -0.9599 0.0018 6 6 2.3032 -1.2050 0.0010 7 6 1.7261 -2.5590 0.0022 8 8 0.5187 -2.7055 0.0019 9 7 2.5358 -3.6365 0.0036 10 6 1.9614 -4.9843 0.0042 11 1 0.9606 -5.0180 -0.4263 12 6 2.9093 -6.0581 -0.5554 13 6 2.4020 -6.9788 0.5670 14 1 3.1849 -7.5873 1.0198 15 7 1.2182 -7.7583 0.1967 16 6 0.9530 -8.9430 0.8299 17 1 1.6164 -9.3026 1.6027 18 6 -0.1689 -9.6815 0.4794 19 7 -0.9776 -9.2430 -0.4620 20 14 -0.5304 -11.2980 1.3428 21 1 -1.3770 -11.0435 2.5360 22 1 -1.2470 -12.2068 0.4123 23 1 0.7454 -11.9290 1.7665 24 6 2.0733 -5.7009 1.3602 25 1 -0.3634 0.0001 1.0276 26 1 -0.3633 0.8899 -0.5139 27 1 -0.3634 -0.8900 -0.5138 28 1 1.8373 2.1102 0.0004 29 1 4.4044 -1.7239 0.0021 30 1 3.4987 -3.5197 0.0035 31 1 2.6406 -6.3995 -1.5551 32 1 3.9643 -5.7988 -0.4661 33 1 0.6223 -7.4352 -0.4971 34 1 -1.7618 -9.7588 -0.7067 35 1 2.8993 -5.3444 1.9757 36 1 1.1306 -5.7544 1.9049 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020056777.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:19:14 Heat of formation + Delta-G solvation = 24.629688 kcal Electronic energy + Delta-G solvation = -18951.101380 eV Core-core repulsion = 15948.733448 eV Total energy + Delta-G solvation = -3002.367931 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.08825 -38.40858 -36.92029 -34.12716 -32.82857 -31.04316 -29.61608 -27.79696 -25.11160 -25.05266 -23.91535 -22.69326 -20.81067 -19.38805 -18.37696 -17.86449 -17.33973 -16.90539 -15.77870 -15.00098 -14.83740 -14.50999 -13.98895 -13.64637 -13.59745 -13.39216 -13.04308 -12.77687 -12.69392 -12.25181 -12.05446 -11.96824 -11.94711 -11.59754 -11.10210 -10.86804 -10.78671 -10.25691 -10.15826 -9.89167 -9.71225 -9.52957 -9.13007 -8.91318 -8.74684 -8.48425 -7.00131 -5.78607 -3.08735 0.56626 1.32230 1.68581 1.86709 3.33912 3.40059 3.43773 3.48495 3.50438 4.43953 4.56681 4.87265 4.98556 5.05435 5.14384 5.25417 5.39305 5.41723 5.48107 5.50453 5.70612 5.85273 5.87852 5.99828 6.08354 6.08843 6.20561 6.35437 6.47720 6.63310 6.73257 6.79657 7.04059 7.66775 7.70202 8.37421 8.39601 9.50297 10.06524 10.40601 11.43566 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.038591 B = 0.003175 C = 0.003011 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.375289 B = 8816.498341 C = 9298.380437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.049 4.049 3 C -0.247 4.247 4 S 0.173 5.827 5 C -0.213 4.213 6 C -0.146 4.146 7 C 0.571 3.429 8 O -0.528 6.528 9 N -0.712 5.712 10 C 0.126 3.874 11 H 0.114 0.886 12 C -0.164 4.164 13 C 0.172 3.828 14 H 0.069 0.931 15 N -0.705 5.705 16 C -0.246 4.246 17 H 0.073 0.927 18 C -0.011 4.011 19 N -0.930 5.930 20 Si 0.909 3.091 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 C -0.184 4.184 25 H 0.072 0.928 26 H 0.061 0.939 27 H 0.095 0.905 28 H 0.167 0.833 29 H 0.169 0.831 30 H 0.393 0.607 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.386 0.614 34 H 0.257 0.743 35 H 0.068 0.932 36 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.859 21.332 0.163 24.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.060 4.060 3 C -0.381 4.381 4 S 0.440 5.560 5 C -0.351 4.351 6 C -0.165 4.165 7 C 0.356 3.644 8 O -0.406 6.406 9 N -0.362 5.362 10 C 0.023 3.977 11 H 0.132 0.868 12 C -0.204 4.204 13 C 0.059 3.941 14 H 0.087 0.913 15 N -0.344 5.344 16 C -0.377 4.377 17 H 0.091 0.909 18 C -0.208 4.208 19 N -0.577 5.577 20 Si 0.740 3.260 21 H -0.216 1.216 22 H -0.217 1.217 23 H -0.207 1.207 24 C -0.226 4.226 25 H 0.091 0.909 26 H 0.080 0.920 27 H 0.113 0.887 28 H 0.185 0.815 29 H 0.187 0.813 30 H 0.227 0.773 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.220 0.780 34 H 0.066 0.934 35 H 0.087 0.913 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 12.294 21.892 0.237 25.109 hybrid contribution -1.124 -1.494 0.274 1.890 sum 11.170 20.398 0.511 23.262 Atomic orbital electron populations 1.20679 0.88543 1.03821 1.03064 1.19927 0.97705 0.89877 0.98509 1.25286 0.96221 1.02606 1.14003 1.82937 1.05942 0.97022 1.70132 1.25619 0.99641 1.02674 1.07138 1.20339 0.92078 0.94776 1.09285 1.17622 0.86625 0.83535 0.76626 1.90773 1.13996 1.86294 1.49539 1.46011 1.09311 1.06259 1.74580 1.22671 0.98769 0.77721 0.98553 0.86774 1.23896 0.98317 0.97008 1.01188 1.20941 0.90785 0.89770 0.92637 0.91341 1.42197 1.25173 1.22426 1.44579 1.19269 1.06599 0.96719 1.15092 0.90929 1.24785 0.97663 0.99240 0.99067 1.69669 1.15763 1.39557 1.32751 0.86163 0.77899 0.83298 0.78635 1.21632 1.21740 1.20692 1.24350 1.01939 0.99810 0.96513 0.90929 0.91976 0.88683 0.81508 0.81331 0.77275 0.90786 0.90393 0.77954 0.93358 0.91334 0.90960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.19 9.54 36.00 0.34 -0.85 16 2 C -0.05 -0.58 6.01 -104.06 -0.63 -1.20 16 3 C -0.25 -2.25 10.91 28.86 0.31 -1.93 16 4 S 0.17 1.33 23.02 -107.50 -2.48 -1.14 16 5 C -0.21 -1.99 10.38 29.93 0.31 -1.67 16 6 C -0.15 -1.83 5.98 -104.63 -0.63 -2.45 16 7 C 0.57 8.83 7.79 -12.63 -0.10 8.73 16 8 O -0.53 -10.16 13.83 5.25 0.07 -10.09 16 9 N -0.71 -9.78 5.33 -54.16 -0.29 -10.07 16 10 C 0.13 2.12 4.09 -67.11 -0.27 1.84 16 11 H 0.11 2.30 7.50 -51.93 -0.39 1.91 16 12 C -0.16 -2.59 7.58 -25.92 -0.20 -2.79 16 13 C 0.17 3.36 4.57 -67.03 -0.31 3.05 16 14 H 0.07 1.31 8.10 -51.93 -0.42 0.89 16 15 N -0.71 -17.71 5.31 -52.55 -0.28 -17.99 16 16 C -0.25 -6.83 9.97 -15.06 -0.15 -6.98 16 17 H 0.07 1.94 7.83 -52.48 -0.41 1.53 16 18 C -0.01 -0.32 5.50 -17.43 -0.10 -0.42 16 19 N -0.93 -28.30 13.06 55.49 0.72 -27.58 16 20 Si 0.91 22.42 29.55 -169.99 -5.02 17.40 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 22 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 23 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 24 C -0.18 -3.27 7.69 -25.83 -0.20 -3.46 16 25 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 26 H 0.06 0.57 8.13 -51.93 -0.42 0.15 16 27 H 0.09 1.35 6.03 -51.93 -0.31 1.04 16 28 H 0.17 1.12 8.06 -52.49 -0.42 0.70 16 29 H 0.17 1.14 7.01 -52.49 -0.37 0.77 16 30 H 0.39 4.06 7.21 -40.82 -0.29 3.76 16 31 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 32 H 0.08 0.98 8.11 -51.93 -0.42 0.56 16 33 H 0.39 10.38 7.90 -40.82 -0.32 10.05 16 34 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 35 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 LS Contribution 318.17 15.07 4.79 4.79 Total: -1.00 -32.48 318.17 -8.69 -41.17 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: -4.61 Total: 11.63 kcal Atomic # 6 Polarization: -6.52 SS G_CDS: -1.60 Total: -8.13 kcal Atomic # 7 Polarization: -55.80 SS G_CDS: 0.16 Total: -55.64 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.07 Total: -10.09 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Atomic # 16 Polarization: 1.33 SS G_CDS: -2.48 Total: -1.14 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.48 -8.69 -41.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020056777.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.798 kcal (2) G-P(sol) polarization free energy of solvation -32.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.168 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds