Wall clock time and date at job start Tue Mar 31 2020 01:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.32771 * 124.71426 * 2 1 4 4 C 1.44425 * 113.08312 * 179.97438 * 3 2 1 5 5 C 1.47186 * 123.46033 * 179.97438 * 4 3 2 6 6 O 1.21640 * 120.00282 * 0.02562 * 5 4 3 7 7 N 1.34782 * 120.00151 * 179.97438 * 5 4 3 8 8 C 1.46503 * 119.99842 * 179.97438 * 7 5 4 9 9 H 1.08994 * 112.85174 * 336.19608 * 8 7 5 10 10 C 1.54051 * 113.61555 * 107.51271 * 8 7 5 11 11 C 1.53777 * 86.98700 * 139.97786 * 10 8 7 12 12 H 1.09004 * 113.61454 * 219.97973 * 11 10 8 13 13 N 1.46499 * 113.61716 * 89.15735 * 11 10 8 14 14 C 1.36939 * 119.99933 * 106.13991 * 13 11 10 15 15 H 1.08001 * 119.99700 * 359.72658 * 14 13 11 16 16 C 1.38810 * 120.00095 * 179.71972 * 14 13 11 17 17 N 1.31624 * 119.99740 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00044 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.47144 * 90.00258 * 18 16 14 20 20 H 1.48500 * 109.47140 * 210.00775 * 18 16 14 21 21 H 1.48502 * 109.46967 * 330.00206 * 18 16 14 22 22 C 1.53780 * 87.17096 * 334.56650 * 11 10 8 23 23 C 1.36010 * 113.07957 * 0.24292 * 4 3 2 24 24 S 1.70444 * 110.81683 * 359.62724 * 23 4 3 25 25 H 1.08997 * 109.47195 * 89.99619 * 1 2 3 26 26 H 1.09004 * 109.47149 * 210.00633 * 1 2 3 27 27 H 1.09005 * 109.46671 * 329.99912 * 1 2 3 28 28 H 1.07995 * 123.45932 * 359.97438 * 3 2 1 29 29 H 0.97002 * 119.99739 * 0.02562 * 7 5 4 30 30 H 1.08998 * 113.61464 * 25.46723 * 10 8 7 31 31 H 1.09002 * 113.69217 * 254.49390 * 10 8 7 32 32 H 0.97001 * 119.99790 * 285.85964 * 13 11 10 33 33 H 0.96998 * 119.99409 * 179.97438 * 17 16 14 34 34 H 1.09001 * 113.61616 * 140.02663 * 22 11 10 35 35 H 1.09002 * 113.61769 * 270.84577 * 22 11 10 36 36 H 1.08000 * 124.59391 * 179.72876 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2631 1.0914 0.0000 4 6 3.6777 0.8002 0.0006 5 6 4.7201 1.8393 0.0002 6 8 4.4072 3.0148 -0.0003 7 7 6.0214 1.4884 0.0013 8 6 7.0590 2.5228 0.0003 9 1 6.7101 3.4718 -0.4066 10 6 7.7953 2.6596 1.3465 11 6 9.0849 2.8455 0.5298 12 1 9.9494 2.3372 0.9570 13 7 9.3614 4.2407 0.1789 14 6 10.3580 4.9241 0.8230 15 1 10.9373 4.4359 1.5928 16 6 10.6239 6.2443 0.4865 17 7 9.9176 6.8394 -0.4513 18 14 11.9829 7.1768 1.3657 19 1 13.2623 6.9930 0.6345 20 1 11.6422 8.6214 1.4120 21 1 12.1246 6.6571 2.7495 22 6 8.3971 2.0524 -0.5939 23 6 3.9476 -0.5328 -0.0043 24 16 2.5064 -1.4427 0.0008 25 1 -0.3633 0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5139 28 1 1.8616 2.0939 -0.0004 29 1 6.2710 0.5511 0.0020 30 1 7.7846 1.7484 1.9446 31 1 7.5074 3.5438 1.9153 32 1 8.8412 4.6791 -0.5125 33 1 10.1032 7.7621 -0.6862 34 1 8.5948 2.4465 -1.5907 35 1 8.5519 0.9755 -0.5262 36 1 4.9407 -0.9573 -0.0089 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001020746756.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:35:51 Heat of formation + Delta-G solvation = 22.292960 kcal Electronic energy + Delta-G solvation = -18672.198814 eV Core-core repulsion = 15669.729555 eV Total energy + Delta-G solvation = -3002.469259 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.99297 -38.30088 -36.94516 -34.08428 -32.92762 -31.94888 -29.67909 -26.97772 -25.42651 -25.10465 -23.90841 -22.52599 -20.82460 -19.47927 -18.76592 -17.54082 -17.26650 -17.01708 -15.74473 -14.94550 -14.81965 -14.65302 -14.10304 -13.96336 -13.90216 -13.34788 -13.04977 -12.72860 -12.56464 -12.38707 -12.29657 -12.02148 -11.92934 -11.63135 -11.23385 -10.87459 -10.77852 -10.26623 -10.13862 -9.93150 -9.71320 -9.59661 -9.06164 -8.91019 -8.77774 -8.55051 -6.99551 -5.78076 -3.08222 0.54806 1.25072 1.65165 1.86117 3.33362 3.42066 3.43935 3.48791 3.51005 4.43172 4.57105 4.77183 4.89171 5.01825 5.09917 5.18851 5.21308 5.25473 5.40089 5.48357 5.53545 5.69234 5.85860 5.88056 5.99846 6.08875 6.12980 6.22499 6.37798 6.63606 6.73245 6.79797 7.04548 7.67084 7.70694 8.37129 8.40194 9.50826 10.07118 10.41161 11.44149 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.045037 B = 0.002930 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.556074 B = 9553.617411 C = 9924.278989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.204 4.204 3 C -0.090 4.090 4 C -0.141 4.141 5 C 0.570 3.430 6 O -0.532 6.532 7 N -0.711 5.711 8 C 0.126 3.874 9 H 0.115 0.885 10 C -0.184 4.184 11 C 0.172 3.828 12 H 0.068 0.932 13 N -0.706 5.706 14 C -0.245 4.245 15 H 0.073 0.927 16 C -0.012 4.012 17 N -0.930 5.930 18 Si 0.909 3.091 19 H -0.289 1.289 20 H -0.291 1.291 21 H -0.281 1.281 22 C -0.164 4.164 23 C -0.217 4.217 24 S 0.175 5.825 25 H 0.075 0.925 26 H 0.068 0.932 27 H 0.078 0.922 28 H 0.154 0.846 29 H 0.394 0.606 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.386 0.614 33 H 0.257 0.743 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.417 -20.170 0.156 26.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.320 4.320 3 C -0.119 4.119 4 C -0.160 4.160 5 C 0.355 3.645 6 O -0.410 6.410 7 N -0.361 5.361 8 C 0.022 3.978 9 H 0.133 0.867 10 C -0.226 4.226 11 C 0.059 3.941 12 H 0.086 0.914 13 N -0.344 5.344 14 C -0.376 4.376 15 H 0.091 0.909 16 C -0.208 4.208 17 N -0.578 5.578 18 Si 0.740 3.260 19 H -0.217 1.217 20 H -0.217 1.217 21 H -0.207 1.207 22 C -0.204 4.204 23 C -0.355 4.355 24 S 0.440 5.560 25 H 0.094 0.906 26 H 0.087 0.913 27 H 0.097 0.903 28 H 0.171 0.829 29 H 0.228 0.772 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.221 0.779 33 H 0.066 0.934 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -16.779 -20.742 0.251 26.680 hybrid contribution 1.118 1.723 0.234 2.068 sum -15.660 -19.019 0.485 24.642 Atomic orbital electron populations 1.20340 0.87416 1.03312 1.02921 1.24367 1.00494 0.95947 1.11223 1.21082 0.90477 0.99823 1.00516 1.20404 0.94536 0.92540 1.08472 1.17662 0.82343 0.87890 0.76626 1.90824 1.82121 1.18571 1.49487 1.45993 1.05458 1.10110 1.74551 1.22734 0.84683 0.91894 0.98484 0.86701 1.24366 1.00307 1.01292 0.96651 1.20902 0.93641 0.86978 0.92596 0.91444 1.42201 1.40639 1.06764 1.44831 1.19264 1.09301 0.93992 1.15054 0.90932 1.24790 0.99777 0.97109 0.99130 1.69672 1.42261 1.12632 1.33197 0.86157 0.81528 0.79259 0.79029 1.21657 1.21724 1.20692 1.23884 0.95378 1.00089 1.01019 1.25592 1.04557 0.97541 1.07828 1.82928 0.93882 1.08634 1.70529 0.90638 0.91258 0.90319 0.82891 0.77232 0.91307 0.90933 0.77949 0.93359 0.90789 0.90358 0.81335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.51 10.35 36.00 0.37 -0.13 16 2 C -0.20 -1.85 6.44 -36.18 -0.23 -2.09 16 3 C -0.09 -1.05 9.95 -39.02 -0.39 -1.44 16 4 C -0.14 -1.77 5.98 -104.63 -0.63 -2.40 16 5 C 0.57 9.06 7.79 -12.62 -0.10 8.96 16 6 O -0.53 -10.83 16.40 5.24 0.09 -10.74 16 7 N -0.71 -9.96 5.33 -54.02 -0.29 -10.25 16 8 C 0.13 2.14 4.13 -66.97 -0.28 1.87 16 9 H 0.12 2.36 7.46 -51.93 -0.39 1.97 16 10 C -0.18 -3.30 7.70 -25.78 -0.20 -3.50 16 11 C 0.17 3.39 4.55 -67.12 -0.31 3.08 16 12 H 0.07 1.29 8.11 -51.93 -0.42 0.87 16 13 N -0.71 -17.84 5.31 -52.64 -0.28 -18.12 16 14 C -0.25 -6.84 9.97 -15.06 -0.15 -6.99 16 15 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 16 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 17 N -0.93 -28.46 13.06 55.49 0.72 -27.74 16 18 Si 0.91 22.52 29.55 -169.99 -5.02 17.50 16 19 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 20 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 C -0.16 -2.61 7.57 -25.92 -0.20 -2.81 16 23 C -0.22 -2.03 10.38 29.93 0.31 -1.72 16 24 S 0.17 1.36 23.00 -107.50 -2.47 -1.12 16 25 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 28 H 0.15 1.82 8.06 -52.49 -0.42 1.40 16 29 H 0.39 4.11 7.23 -40.82 -0.29 3.81 16 30 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 31 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 32 H 0.39 10.45 7.90 -40.82 -0.32 10.13 16 33 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 34 H 0.07 1.26 8.14 -51.93 -0.42 0.84 16 35 H 0.08 0.99 8.12 -51.93 -0.42 0.57 16 36 H 0.17 1.15 7.01 -52.49 -0.37 0.78 16 LS Contribution 323.15 15.07 4.87 4.87 Total: -1.00 -33.34 323.15 -8.99 -42.33 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: -4.72 Total: 10.88 kcal Atomic # 6 Polarization: -5.73 SS G_CDS: -1.89 Total: -7.61 kcal Atomic # 7 Polarization: -56.27 SS G_CDS: 0.16 Total: -56.11 kcal Atomic # 8 Polarization: -10.83 SS G_CDS: 0.09 Total: -10.74 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Atomic # 16 Polarization: 1.36 SS G_CDS: -2.47 Total: -1.12 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -33.34 -8.99 -42.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020746756.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.626 kcal (2) G-P(sol) polarization free energy of solvation -33.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds