Wall clock time and date at job start Tue Mar 31 2020 01:35:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.32771 * 124.71426 * 2 1 4 4 C 1.44425 * 113.08312 * 179.97438 * 3 2 1 5 5 C 1.47186 * 123.46033 * 179.97438 * 4 3 2 6 6 O 1.21640 * 120.00282 * 0.02562 * 5 4 3 7 7 N 1.34782 * 120.00151 * 179.97438 * 5 4 3 8 8 C 1.46503 * 119.99842 * 179.97438 * 7 5 4 9 9 H 1.08994 * 112.85174 * 336.19608 * 8 7 5 10 10 C 1.54051 * 113.61555 * 107.51271 * 8 7 5 11 11 C 1.53777 * 86.98700 * 139.97786 * 10 8 7 12 12 H 1.09004 * 113.61454 * 219.97973 * 11 10 8 13 13 N 1.46499 * 113.61716 * 89.15735 * 11 10 8 14 14 C 1.36939 * 119.99933 * 106.13991 * 13 11 10 15 15 H 1.08001 * 119.99700 * 359.72658 * 14 13 11 16 16 C 1.38810 * 120.00095 * 179.71972 * 14 13 11 17 17 N 1.31624 * 119.99740 * 0.02562 * 16 14 13 18 18 Si 1.86796 * 120.00044 * 179.97438 * 16 14 13 19 19 H 1.48493 * 109.47144 * 90.00258 * 18 16 14 20 20 H 1.48500 * 109.47140 * 210.00775 * 18 16 14 21 21 H 1.48502 * 109.46967 * 330.00206 * 18 16 14 22 22 C 1.53780 * 87.17096 * 334.56650 * 11 10 8 23 23 C 1.36010 * 113.07957 * 0.24292 * 4 3 2 24 24 S 1.70444 * 110.81683 * 359.62724 * 23 4 3 25 25 H 1.08997 * 109.47195 * 89.99619 * 1 2 3 26 26 H 1.09004 * 109.47149 * 210.00633 * 1 2 3 27 27 H 1.09005 * 109.46671 * 329.99912 * 1 2 3 28 28 H 1.07995 * 123.45932 * 359.97438 * 3 2 1 29 29 H 0.97002 * 119.99739 * 0.02562 * 7 5 4 30 30 H 1.08998 * 113.61464 * 25.46723 * 10 8 7 31 31 H 1.09002 * 113.69217 * 254.49390 * 10 8 7 32 32 H 0.97001 * 119.99790 * 285.85964 * 13 11 10 33 33 H 0.96998 * 119.99409 * 179.97438 * 17 16 14 34 34 H 1.09001 * 113.61616 * 140.02663 * 22 11 10 35 35 H 1.09002 * 113.61769 * 270.84577 * 22 11 10 36 36 H 1.08000 * 124.59391 * 179.72876 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2631 1.0914 0.0000 4 6 3.6777 0.8002 0.0006 5 6 4.7201 1.8393 0.0002 6 8 4.4072 3.0148 -0.0003 7 7 6.0214 1.4884 0.0013 8 6 7.0590 2.5228 0.0003 9 1 6.7101 3.4718 -0.4066 10 6 7.7953 2.6596 1.3465 11 6 9.0849 2.8455 0.5298 12 1 9.9494 2.3372 0.9570 13 7 9.3614 4.2407 0.1789 14 6 10.3580 4.9241 0.8230 15 1 10.9373 4.4359 1.5928 16 6 10.6239 6.2443 0.4865 17 7 9.9176 6.8394 -0.4513 18 14 11.9829 7.1768 1.3657 19 1 13.2623 6.9930 0.6345 20 1 11.6422 8.6214 1.4120 21 1 12.1246 6.6571 2.7495 22 6 8.3971 2.0524 -0.5939 23 6 3.9476 -0.5328 -0.0043 24 16 2.5064 -1.4427 0.0008 25 1 -0.3633 0.0001 -1.0276 26 1 -0.3633 -0.8900 0.5139 27 1 -0.3633 0.8900 0.5139 28 1 1.8616 2.0939 -0.0004 29 1 6.2710 0.5511 0.0020 30 1 7.7846 1.7484 1.9446 31 1 7.5074 3.5438 1.9153 32 1 8.8412 4.6791 -0.5125 33 1 10.1032 7.7621 -0.6862 34 1 8.5948 2.4465 -1.5907 35 1 8.5519 0.9755 -0.5262 36 1 4.9407 -0.9573 -0.0089 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001020746756.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:35:51 Heat of formation + Delta-G solvation = -1.025355 kcal Electronic energy + Delta-G solvation = -18673.209972 eV Core-core repulsion = 15669.729555 eV Total energy + Delta-G solvation = -3003.480417 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.24814 -39.62916 -37.95362 -35.77480 -34.45278 -32.88723 -31.58530 -27.69960 -26.72220 -26.53446 -25.63910 -23.97277 -21.86185 -20.60580 -20.03990 -19.35040 -18.38463 -18.06751 -17.08201 -16.63655 -16.15402 -15.85387 -15.63248 -15.12240 -14.76300 -14.67444 -14.41795 -14.03099 -13.65765 -13.40945 -13.32524 -13.24095 -12.95888 -12.91568 -12.80737 -12.61335 -12.18085 -11.96828 -11.84515 -11.71273 -11.36489 -10.98573 -10.85403 -10.08271 -9.76719 -9.32865 -9.04329 -7.96627 -5.26734 -0.24138 0.57127 0.90566 0.94027 1.46451 1.49062 1.57367 2.18088 2.30508 2.54643 3.35194 3.61060 3.75085 3.82117 3.87312 3.94872 4.16986 4.27901 4.32001 4.37818 4.49692 4.75664 4.76816 4.80300 4.89492 4.98357 5.01759 5.12801 5.19620 5.22844 5.29090 5.36394 5.49535 5.65654 6.25789 6.55701 7.22551 7.30158 8.06296 8.27591 9.27056 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.045037 B = 0.002930 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.556074 B = 9553.617411 C = 9924.278989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.205 4.205 3 C -0.123 4.123 4 C -0.177 4.177 5 C 0.566 3.434 6 O -0.594 6.594 7 N -0.693 5.693 8 C 0.129 3.871 9 H 0.069 0.931 10 C -0.171 4.171 11 C 0.152 3.848 12 H 0.081 0.919 13 N -0.724 5.724 14 C -0.243 4.243 15 H 0.083 0.917 16 C -0.080 4.080 17 N -0.973 5.973 18 Si 0.978 3.022 19 H -0.283 1.283 20 H -0.299 1.299 21 H -0.267 1.267 22 C -0.136 4.136 23 C -0.206 4.206 24 S 0.252 5.748 25 H 0.086 0.914 26 H 0.088 0.912 27 H 0.078 0.922 28 H 0.133 0.867 29 H 0.416 0.584 30 H 0.107 0.893 31 H 0.033 0.967 32 H 0.371 0.629 33 H 0.251 0.749 34 H 0.062 0.938 35 H 0.128 0.872 36 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.404 -24.326 0.867 29.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.322 4.322 3 C -0.152 4.152 4 C -0.196 4.196 5 C 0.353 3.647 6 O -0.476 6.476 7 N -0.344 5.344 8 C 0.024 3.976 9 H 0.087 0.913 10 C -0.213 4.213 11 C 0.041 3.959 12 H 0.099 0.901 13 N -0.362 5.362 14 C -0.375 4.375 15 H 0.101 0.899 16 C -0.272 4.272 17 N -0.623 5.623 18 Si 0.806 3.194 19 H -0.210 1.210 20 H -0.226 1.226 21 H -0.192 1.192 22 C -0.175 4.175 23 C -0.345 4.345 24 S 0.518 5.482 25 H 0.105 0.895 26 H 0.107 0.893 27 H 0.097 0.903 28 H 0.151 0.849 29 H 0.254 0.746 30 H 0.125 0.875 31 H 0.052 0.948 32 H 0.203 0.797 33 H 0.060 0.940 34 H 0.081 0.919 35 H 0.147 0.853 36 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -16.760 -25.010 0.988 30.123 hybrid contribution 1.002 2.809 0.035 2.982 sum -15.758 -22.201 1.024 27.244 Atomic orbital electron populations 1.20476 0.85552 1.04314 1.03939 1.24759 1.02047 0.96230 1.09164 1.21038 0.90874 1.00026 1.03230 1.20103 0.93751 0.92888 1.12814 1.18256 0.83295 0.87909 0.75231 1.90789 1.83033 1.21310 1.52425 1.45698 1.04353 1.10563 1.73824 1.22305 0.85976 0.91312 0.97973 0.91281 1.24243 0.98993 1.01331 0.96748 1.21236 0.94836 0.84829 0.94973 0.90150 1.42416 1.40152 1.09095 1.44530 1.19721 1.09045 0.94281 1.14434 0.89908 1.25669 1.02652 0.98386 1.00517 1.69849 1.44498 1.12580 1.35397 0.85077 0.78639 0.77193 0.78469 1.21010 1.22578 1.19202 1.23732 0.92745 1.02225 0.98838 1.26005 1.07161 0.96510 1.04803 1.82729 0.91497 1.06062 1.67885 0.89523 0.89287 0.90349 0.84925 0.74588 0.87512 0.94769 0.79717 0.94043 0.91942 0.85345 0.78433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.88 10.35 71.24 0.74 -0.14 16 2 C -0.21 -3.37 6.44 24.51 0.16 -3.21 16 3 C -0.12 -2.93 9.95 22.67 0.23 -2.70 16 4 C -0.18 -4.35 5.98 -19.87 -0.12 -4.47 16 5 C 0.57 18.42 7.79 86.59 0.67 19.09 16 6 O -0.59 -26.01 16.40 -4.16 -0.07 -26.08 16 7 N -0.69 -18.65 5.33 -443.07 -2.36 -21.01 16 8 C 0.13 4.43 4.13 45.61 0.19 4.62 16 9 H 0.07 3.05 7.46 -2.39 -0.02 3.04 16 10 C -0.17 -6.06 7.70 31.21 0.24 -5.82 16 11 C 0.15 5.85 4.55 45.52 0.21 6.06 16 12 H 0.08 2.89 8.11 -2.39 -0.02 2.87 16 13 N -0.72 -37.53 5.31 -320.45 -1.70 -39.23 16 14 C -0.24 -13.72 9.97 84.03 0.84 -12.88 16 15 H 0.08 4.39 7.83 -2.91 -0.02 4.37 16 16 C -0.08 -4.73 5.50 84.86 0.47 -4.27 16 17 N -0.97 -61.80 13.06 21.65 0.28 -61.51 16 18 Si 0.98 47.06 29.55 68.60 2.03 49.09 16 19 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 20 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 21 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 22 C -0.14 -4.08 7.57 31.12 0.24 -3.85 16 23 C -0.21 -3.20 10.38 67.30 0.70 -2.50 16 24 S 0.25 2.94 23.00 -56.49 -1.30 1.64 16 25 H 0.09 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.09 0.58 8.14 -2.39 -0.02 0.56 16 27 H 0.08 0.83 8.14 -2.38 -0.02 0.81 16 28 H 0.13 3.52 8.06 -2.91 -0.02 3.50 16 29 H 0.42 7.23 7.23 -92.71 -0.67 6.56 16 30 H 0.11 2.96 8.14 -2.39 -0.02 2.94 16 31 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.37 21.12 7.90 -92.71 -0.73 20.39 16 33 H 0.25 15.45 8.31 -92.71 -0.77 14.68 16 34 H 0.06 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.13 2.61 8.12 -2.39 -0.02 2.59 16 36 H 0.20 1.72 7.01 -2.91 -0.02 1.70 16 Total: -1.00 -77.92 323.15 1.14 -76.78 By element: Atomic # 1 Polarization: 30.67 SS G_CDS: -0.29 Total: 30.38 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: 4.55 Total: -10.06 kcal Atomic # 7 Polarization: -117.98 SS G_CDS: -3.78 Total: -121.75 kcal Atomic # 8 Polarization: -26.01 SS G_CDS: -0.07 Total: -26.08 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.09 kcal Atomic # 16 Polarization: 2.94 SS G_CDS: -1.30 Total: 1.64 kcal Total: -77.92 1.14 -76.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001020746756.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.756 kcal (2) G-P(sol) polarization free energy of solvation -77.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds