Wall clock time and date at job start Tue Mar 31 2020 01:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32776 * 123.45445 * 2 1 4 4 S 1.75501 * 110.57085 * 180.27380 * 3 2 1 5 5 C 1.70442 * 92.44923 * 0.02562 * 4 3 2 6 6 C 1.36007 * 110.81763 * 0.02562 * 5 4 3 7 7 C 1.47193 * 123.46317 * 180.02562 * 6 5 4 8 8 O 1.21640 * 119.99628 * 179.97438 * 7 6 5 9 9 N 1.34771 * 119.99907 * 359.95430 * 7 6 5 10 10 C 1.46502 * 119.99844 * 180.02562 * 9 7 6 11 11 H 1.08992 * 112.85228 * 25.33571 * 10 9 7 12 12 C 1.53776 * 113.61328 * 156.53519 * 10 9 7 13 13 C 1.53779 * 87.08480 * 139.97999 * 12 10 9 14 14 H 1.08998 * 113.61494 * 89.11452 * 13 12 10 15 15 N 1.46501 * 113.61706 * 219.93321 * 13 12 10 16 16 C 1.36935 * 119.99983 * 204.99333 * 15 13 12 17 17 H 1.07994 * 120.00321 * 0.02562 * 16 15 13 18 18 C 1.38816 * 119.99888 * 179.97438 * 16 15 13 19 19 N 1.31621 * 119.99688 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00153 * 180.02562 * 18 16 15 21 21 H 1.48511 * 109.46965 * 60.00395 * 20 18 16 22 22 H 1.48495 * 109.47513 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47138 * 300.00357 * 20 18 16 24 24 C 1.53781 * 113.61255 * 254.13783 * 10 9 7 25 25 H 1.09004 * 109.47148 * 269.69965 * 1 2 3 26 26 H 1.09002 * 109.47670 * 29.69947 * 1 2 3 27 27 H 1.09002 * 109.47432 * 149.70337 * 1 2 3 28 28 H 1.07991 * 124.71467 * 0.24914 * 3 2 1 29 29 H 1.07998 * 124.59184 * 180.02562 * 5 4 3 30 30 H 0.96999 * 120.00471 * 0.02562 * 9 7 6 31 31 H 1.09004 * 113.61698 * 254.53004 * 12 10 9 32 32 H 1.09001 * 113.61896 * 25.43069 * 12 10 9 33 33 H 0.96999 * 119.99920 * 25.00209 * 15 13 12 34 34 H 0.97007 * 119.99506 * 179.97438 * 19 18 16 35 35 H 1.08998 * 113.61830 * 334.57143 * 24 10 9 36 36 H 1.08998 * 113.61305 * 105.47323 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2390 1.1078 0.0000 4 16 3.9498 0.7165 -0.0079 5 6 3.6411 -0.9598 -0.0118 6 6 2.3033 -1.2049 -0.0079 7 6 1.7263 -2.5590 -0.0094 8 8 0.5187 -2.7055 -0.0053 9 7 2.5358 -3.6364 -0.0158 10 6 1.9615 -4.9842 -0.0179 11 1 0.9589 -5.0164 -0.4440 12 6 2.9069 -6.0558 -0.5858 13 6 2.4047 -6.9808 0.5352 14 1 1.5227 -7.5598 0.2613 15 7 3.4595 -7.8010 1.1361 16 6 3.1426 -8.9872 1.7425 17 1 2.1153 -9.3183 1.7775 18 6 4.1421 -9.7645 2.3114 19 7 5.3943 -9.3612 2.2683 20 14 3.7101 -11.3830 3.1380 21 1 3.0704 -12.2883 2.1497 22 1 4.9465 -12.0166 3.6624 23 1 2.7699 -11.1306 4.2594 24 6 2.0794 -5.7061 1.3348 25 1 -0.3634 -0.0054 1.0277 26 1 -0.3634 0.8926 -0.5091 27 1 -0.3634 -0.8873 -0.5184 28 1 1.8374 2.1102 0.0039 29 1 4.4044 -1.7238 -0.0167 30 1 3.4988 -3.5196 -0.0191 31 1 2.6340 -6.3934 -1.5857 32 1 3.9623 -5.7975 -0.4988 33 1 4.3822 -7.5037 1.1045 34 1 6.0927 -9.9043 2.6662 35 1 2.9080 -5.3519 1.9480 36 1 1.1392 -5.7617 1.8834 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021946718.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:19:16 Heat of formation + Delta-G solvation = 22.252953 kcal Electronic energy + Delta-G solvation = -18814.550541 eV Core-core repulsion = 15812.079547 eV Total energy + Delta-G solvation = -3002.470994 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.13199 -38.38051 -36.94905 -34.18255 -32.92517 -31.07535 -29.78334 -27.83276 -25.13963 -25.08087 -24.05355 -22.30474 -20.61276 -19.71249 -18.62993 -17.93491 -17.14797 -16.93174 -15.96945 -15.06198 -14.72785 -14.50471 -14.26032 -13.69310 -13.60389 -13.39905 -13.03774 -12.90491 -12.71400 -12.29894 -12.06572 -12.01809 -11.92943 -11.27020 -11.11172 -10.91853 -10.61847 -10.52046 -10.33188 -10.08434 -9.73546 -9.56987 -9.14637 -8.92255 -8.80317 -8.50611 -7.00203 -5.81577 -3.10461 0.55865 1.31886 1.68755 1.83073 3.27767 3.34119 3.42562 3.47043 3.47983 4.43955 4.57230 4.83681 4.95587 5.03693 5.12123 5.22466 5.34850 5.38975 5.46284 5.48265 5.64406 5.81529 5.85229 5.92860 6.04534 6.10317 6.23539 6.29404 6.39056 6.51133 6.60972 6.73931 7.05494 7.62079 7.67267 8.29177 8.37015 9.48284 10.04763 10.39347 11.40804 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.033498 B = 0.003084 C = 0.002924 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 835.675163 B = 9075.636390 C = 9572.440268 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.050 4.050 3 C -0.248 4.248 4 S 0.179 5.821 5 C -0.210 4.210 6 C -0.150 4.150 7 C 0.575 3.425 8 O -0.537 6.537 9 N -0.708 5.708 10 C 0.119 3.881 11 H 0.110 0.890 12 C -0.158 4.158 13 C 0.169 3.831 14 H 0.080 0.920 15 N -0.710 5.710 16 C -0.245 4.245 17 H 0.072 0.928 18 C -0.012 4.012 19 N -0.934 5.934 20 Si 0.909 3.091 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.285 1.285 24 C -0.176 4.176 25 H 0.071 0.929 26 H 0.061 0.939 27 H 0.093 0.907 28 H 0.167 0.833 29 H 0.171 0.829 30 H 0.397 0.603 31 H 0.067 0.933 32 H 0.081 0.919 33 H 0.385 0.615 34 H 0.256 0.744 35 H 0.079 0.921 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.731 21.803 -6.645 23.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.061 4.061 3 C -0.383 4.383 4 S 0.446 5.554 5 C -0.348 4.348 6 C -0.169 4.169 7 C 0.360 3.640 8 O -0.416 6.416 9 N -0.357 5.357 10 C 0.014 3.986 11 H 0.128 0.872 12 C -0.198 4.198 13 C 0.056 3.944 14 H 0.098 0.902 15 N -0.348 5.348 16 C -0.376 4.376 17 H 0.090 0.910 18 C -0.208 4.208 19 N -0.582 5.582 20 Si 0.739 3.261 21 H -0.212 1.212 22 H -0.217 1.217 23 H -0.212 1.212 24 C -0.218 4.218 25 H 0.090 0.910 26 H 0.080 0.920 27 H 0.112 0.888 28 H 0.185 0.815 29 H 0.188 0.812 30 H 0.232 0.768 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.219 0.781 34 H 0.066 0.934 35 H 0.097 0.903 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -3.293 22.362 -6.566 23.538 hybrid contribution -0.449 -1.563 0.579 1.726 sum -3.742 20.800 -5.987 21.965 Atomic orbital electron populations 1.20661 0.88642 1.03629 1.03003 1.19897 0.97611 0.89881 0.98731 1.25299 0.96373 1.02599 1.13990 1.82992 1.05738 0.96939 1.69756 1.25675 0.99727 1.02830 1.06592 1.20287 0.92077 0.94668 1.09824 1.17598 0.86499 0.83556 0.76331 1.90726 1.14054 1.86442 1.50361 1.45938 1.09633 1.05982 1.74196 1.22519 0.98388 0.78478 0.99177 0.87186 1.23860 0.99348 0.96497 1.00130 1.21380 0.92976 0.89083 0.90946 0.90173 1.42344 1.05040 1.21614 1.65776 1.19279 0.93361 0.96344 1.28654 0.91003 1.24766 0.95310 0.99182 1.01577 1.69651 0.99109 1.39164 1.50239 0.86247 0.76902 0.83548 0.79371 1.21170 1.21681 1.21181 1.24365 1.01688 0.99474 0.96315 0.90995 0.92026 0.88839 0.81517 0.81185 0.76845 0.91402 0.90031 0.78110 0.93393 0.90270 0.92151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.07 9.54 36.01 0.34 -0.73 16 2 C -0.05 -0.56 6.01 -104.06 -0.63 -1.19 16 3 C -0.25 -2.20 10.91 28.86 0.31 -1.89 16 4 S 0.18 1.42 23.02 -107.50 -2.47 -1.06 16 5 C -0.21 -2.02 10.38 29.93 0.31 -1.71 16 6 C -0.15 -1.83 5.98 -104.63 -0.63 -2.45 16 7 C 0.57 8.36 7.79 -12.63 -0.10 8.26 16 8 O -0.54 -9.29 13.83 5.24 0.07 -9.22 16 9 N -0.71 -9.48 5.33 -54.17 -0.29 -9.77 16 10 C 0.12 1.80 4.21 -67.12 -0.28 1.51 16 11 H 0.11 1.72 7.50 -51.93 -0.39 1.33 16 12 C -0.16 -2.48 7.58 -25.92 -0.20 -2.68 16 13 C 0.17 3.28 4.48 -67.03 -0.30 2.98 16 14 H 0.08 1.55 8.10 -51.93 -0.42 1.13 16 15 N -0.71 -17.47 5.41 -52.55 -0.28 -17.76 16 16 C -0.25 -6.75 9.97 -15.06 -0.15 -6.90 16 17 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 18 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 19 N -0.93 -27.85 13.06 55.49 0.72 -27.13 16 20 Si 0.91 22.24 29.55 -169.99 -5.02 17.21 16 21 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 24 C -0.18 -3.11 7.70 -25.83 -0.20 -3.31 16 25 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 26 H 0.06 0.51 8.13 -51.93 -0.42 0.09 16 27 H 0.09 1.19 6.03 -51.93 -0.31 0.88 16 28 H 0.17 1.08 8.06 -52.49 -0.42 0.65 16 29 H 0.17 1.29 7.01 -52.49 -0.37 0.92 16 30 H 0.40 4.40 7.21 -40.82 -0.29 4.11 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.08 1.25 8.09 -51.93 -0.42 0.83 16 33 H 0.38 9.96 7.92 -40.82 -0.32 9.64 16 34 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 35 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 36 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 318.33 15.07 4.80 4.80 Total: -1.00 -31.71 318.33 -8.69 -40.41 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -4.61 Total: 11.06 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: -1.60 Total: -8.54 kcal Atomic # 7 Polarization: -54.81 SS G_CDS: 0.15 Total: -54.66 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: 0.07 Total: -9.22 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.21 kcal Atomic # 16 Polarization: 1.42 SS G_CDS: -2.47 Total: -1.06 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -31.71 -8.69 -40.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021946718.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.658 kcal (2) G-P(sol) polarization free energy of solvation -31.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.405 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds