Wall clock time and date at job start Tue Mar 31 2020 01:35:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 S 1.70448 * 124.58963 * 2 1 4 4 C 1.75513 * 92.44454 * 179.97438 * 3 2 1 5 5 C 1.32769 * 110.57240 * 0.26604 * 4 3 2 6 6 C 1.36011 * 124.59187 * 179.97438 * 2 1 3 7 7 C 1.47188 * 123.46391 * 0.07597 * 6 2 1 8 8 O 1.21636 * 119.99611 * 359.97438 * 7 6 2 9 9 N 1.34777 * 120.00207 * 179.97438 * 7 6 2 10 10 C 1.46502 * 119.99702 * 179.97438 * 9 7 6 11 11 H 1.09001 * 112.85014 * 23.80877 * 10 9 7 12 12 C 1.53781 * 113.60964 * 155.00040 * 10 9 7 13 13 C 1.53775 * 87.08072 * 139.98103 * 12 10 9 14 14 H 1.09004 * 113.61660 * 89.11581 * 13 12 10 15 15 N 1.46498 * 113.61745 * 220.01437 * 13 12 10 16 16 C 1.36934 * 120.00698 * 204.99731 * 15 13 12 17 17 H 1.08006 * 119.99565 * 0.02562 * 16 15 13 18 18 C 1.38809 * 120.00605 * 180.02562 * 16 15 13 19 19 N 1.31620 * 119.99497 * 0.02562 * 18 16 15 20 20 Si 1.86791 * 120.00168 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47562 * 90.00042 * 20 18 16 22 22 H 1.48503 * 109.47104 * 210.00056 * 20 18 16 23 23 H 1.48501 * 109.47407 * 329.99859 * 20 18 16 24 24 C 1.53773 * 113.61424 * 252.49452 * 10 9 7 25 25 H 1.08993 * 109.47542 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.46994 * 120.02762 * 1 2 3 27 27 H 1.09007 * 109.47254 * 240.02933 * 1 2 3 28 28 H 1.08002 * 124.70940 * 179.97438 * 4 3 2 29 29 H 1.08000 * 123.45407 * 179.73409 * 5 4 3 30 30 H 0.96999 * 119.99613 * 359.97438 * 9 7 6 31 31 H 1.09002 * 113.61509 * 254.52644 * 12 10 9 32 32 H 1.08995 * 113.61688 * 25.34775 * 12 10 9 33 33 H 0.97001 * 119.99439 * 25.00557 * 15 13 12 34 34 H 0.97005 * 119.99717 * 179.97438 * 19 18 16 35 35 H 1.09003 * 113.61792 * 334.57256 * 24 10 9 36 36 H 1.09004 * 113.61495 * 105.47097 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4746 1.4032 0.0000 4 6 3.9607 0.4694 0.0008 5 6 3.6943 -0.8313 -0.0048 6 6 2.2791 -1.1197 0.0005 7 6 1.7291 -2.4849 -0.0005 8 8 0.5247 -2.6553 -0.0014 9 7 2.5598 -3.5462 -0.0005 10 6 2.0122 -4.9050 -0.0009 11 1 1.0018 -4.9540 -0.4067 12 6 2.9667 -5.9535 -0.5963 13 6 2.5061 -6.8963 0.5278 14 1 1.6302 -7.4908 0.2677 15 7 3.5893 -7.6983 1.1020 16 6 3.3094 -8.8949 1.7060 17 1 2.2899 -9.2477 1.7588 18 6 4.3357 -9.6545 2.2505 19 7 5.5779 -9.2242 2.1866 20 14 3.9538 -11.2871 3.0738 21 1 4.0169 -12.3763 2.0665 22 1 4.9488 -11.5457 4.1455 23 1 2.5921 -11.2372 3.6643 24 6 2.1747 -5.6350 1.3427 25 1 -0.3634 1.0276 -0.0005 26 1 -0.3633 -0.5142 -0.8897 27 1 -0.3634 -0.5134 0.8903 28 1 4.9537 0.8939 0.0006 29 1 4.4576 -1.5954 -0.0096 30 1 3.5203 -3.4102 -0.0001 31 1 2.6797 -6.2893 -1.5928 32 1 4.0182 -5.6742 -0.5303 33 1 4.5049 -7.3815 1.0543 34 1 6.2952 -9.7549 2.5675 35 1 3.0097 -5.2693 1.9403 36 1 1.2482 -5.7136 1.9117 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001022046696.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:35:56 Heat of formation + Delta-G solvation = 20.503672 kcal Electronic energy + Delta-G solvation = -18821.994815 eV Core-core repulsion = 15819.447966 eV Total energy + Delta-G solvation = -3002.546849 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.07362 -38.30401 -36.79649 -34.13069 -32.77900 -31.99662 -29.91847 -27.41876 -25.11516 -24.79605 -23.69659 -22.18644 -21.21110 -19.78221 -18.88597 -17.46425 -17.18816 -16.57696 -16.02157 -15.07723 -14.94661 -14.53131 -14.24704 -13.69101 -13.65645 -13.53537 -13.03705 -12.84290 -12.77545 -12.31112 -12.08544 -11.90988 -11.81175 -11.27753 -11.25758 -10.92574 -10.62391 -10.49010 -10.32053 -10.04832 -9.73890 -9.56827 -9.04099 -8.91208 -8.81980 -8.55748 -6.98909 -5.80759 -3.09499 0.61970 1.26191 1.65879 1.82808 3.37443 3.41922 3.42380 3.48099 3.49504 4.45571 4.57987 4.71980 4.90849 5.04616 5.13905 5.24585 5.33627 5.38996 5.47765 5.51432 5.70312 5.75276 5.87048 5.94378 6.00333 6.04454 6.14446 6.25835 6.32008 6.53672 6.62414 6.76340 7.07731 7.67883 7.68479 8.33479 8.37899 9.49198 10.05905 10.40512 11.41718 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.037635 B = 0.003016 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.814341 B = 9280.193840 C = 9687.571357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.141 4.141 3 S 0.170 5.830 4 C -0.236 4.236 5 C -0.103 4.103 6 C -0.175 4.175 7 C 0.576 3.424 8 O -0.543 6.543 9 N -0.708 5.708 10 C 0.119 3.881 11 H 0.110 0.890 12 C -0.159 4.159 13 C 0.169 3.831 14 H 0.080 0.920 15 N -0.710 5.710 16 C -0.244 4.244 17 H 0.072 0.928 18 C -0.013 4.013 19 N -0.933 5.933 20 Si 0.908 3.092 21 H -0.289 1.289 22 H -0.291 1.291 23 H -0.281 1.281 24 C -0.176 4.176 25 H 0.061 0.939 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.168 0.832 29 H 0.149 0.851 30 H 0.398 0.602 31 H 0.066 0.934 32 H 0.081 0.919 33 H 0.385 0.615 34 H 0.256 0.744 35 H 0.079 0.921 36 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.804 22.179 -6.374 23.571 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.261 4.261 3 S 0.435 5.565 4 C -0.371 4.371 5 C -0.132 4.132 6 C -0.192 4.192 7 C 0.362 3.638 8 O -0.422 6.422 9 N -0.357 5.357 10 C 0.014 3.986 11 H 0.128 0.872 12 C -0.199 4.199 13 C 0.056 3.944 14 H 0.098 0.902 15 N -0.348 5.348 16 C -0.375 4.375 17 H 0.090 0.910 18 C -0.209 4.209 19 N -0.581 5.581 20 Si 0.739 3.261 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.207 1.207 24 C -0.218 4.218 25 H 0.080 0.920 26 H 0.105 0.895 27 H 0.106 0.894 28 H 0.186 0.814 29 H 0.167 0.833 30 H 0.233 0.767 31 H 0.085 0.915 32 H 0.100 0.900 33 H 0.219 0.781 34 H 0.065 0.935 35 H 0.098 0.902 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.996 23.381 -6.290 24.944 hybrid contribution 1.209 -2.233 0.533 2.594 sum -4.787 21.148 -5.757 22.435 Atomic orbital electron populations 1.20405 0.86642 1.01762 1.04864 1.24538 1.01826 0.96830 1.02943 1.83027 0.95196 1.07561 1.70703 1.25383 1.02223 0.97205 1.12295 1.21268 0.94658 0.96434 1.00873 1.20263 0.92725 0.94001 1.12173 1.17563 0.86276 0.83682 0.76240 1.90754 1.14470 1.86324 1.50643 1.45910 1.09650 1.05924 1.74227 1.22505 0.98619 0.78418 0.99058 0.87217 1.23865 0.99329 0.96693 0.99981 1.21351 0.92731 0.89257 0.91060 0.90193 1.42356 1.04706 1.21077 1.66683 1.19322 0.93352 0.95812 1.29010 0.90975 1.24764 0.95308 0.99144 1.01685 1.69660 0.98623 1.39009 1.50851 0.86174 0.77209 0.83841 0.78883 1.21662 1.21769 1.20672 1.24333 1.01604 0.99439 0.96432 0.91983 0.89496 0.89436 0.81423 0.83338 0.76702 0.91481 0.90016 0.78102 0.93460 0.90239 0.92232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.80 8.77 36.00 0.32 -0.49 16 2 C -0.14 -1.56 6.34 -35.11 -0.22 -1.78 16 3 S 0.17 1.41 22.95 -107.50 -2.47 -1.06 16 4 C -0.24 -1.96 11.12 28.86 0.32 -1.64 16 5 C -0.10 -1.01 9.90 -39.02 -0.39 -1.40 16 6 C -0.18 -2.14 5.98 -104.63 -0.63 -2.77 16 7 C 0.58 8.45 7.79 -12.63 -0.10 8.36 16 8 O -0.54 -9.41 14.24 5.25 0.07 -9.33 16 9 N -0.71 -9.63 5.33 -54.17 -0.29 -9.92 16 10 C 0.12 1.82 4.24 -67.12 -0.28 1.53 16 11 H 0.11 1.74 7.46 -51.93 -0.39 1.36 16 12 C -0.16 -2.51 7.58 -25.92 -0.20 -2.71 16 13 C 0.17 3.30 4.48 -67.12 -0.30 3.00 16 14 H 0.08 1.55 8.10 -51.93 -0.42 1.13 16 15 N -0.71 -17.55 5.40 -52.64 -0.28 -17.83 16 16 C -0.24 -6.73 9.97 -15.06 -0.15 -6.88 16 17 H 0.07 1.93 7.83 -52.48 -0.41 1.52 16 18 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 19 N -0.93 -27.90 13.06 55.49 0.72 -27.18 16 20 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 16 21 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 22 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 C -0.18 -3.12 7.68 -25.92 -0.20 -3.32 16 25 H 0.06 0.47 8.11 -51.93 -0.42 0.05 16 26 H 0.09 0.96 7.78 -51.93 -0.40 0.56 16 27 H 0.09 1.00 7.79 -51.92 -0.40 0.59 16 28 H 0.17 0.97 8.06 -52.49 -0.42 0.54 16 29 H 0.15 1.18 7.10 -52.49 -0.37 0.81 16 30 H 0.40 4.55 7.27 -40.82 -0.30 4.25 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.08 1.27 8.10 -51.93 -0.42 0.85 16 33 H 0.38 10.00 7.93 -40.82 -0.32 9.68 16 34 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 35 H 0.08 1.49 8.14 -51.93 -0.42 1.06 16 36 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 319.47 15.07 4.81 4.81 Total: -1.00 -31.86 319.47 -9.06 -40.92 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: -4.69 Total: 10.89 kcal Atomic # 6 Polarization: -6.63 SS G_CDS: -1.92 Total: -8.56 kcal Atomic # 7 Polarization: -55.08 SS G_CDS: 0.15 Total: -54.93 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.07 Total: -9.33 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Atomic # 16 Polarization: 1.41 SS G_CDS: -2.47 Total: -1.06 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.86 -9.06 -40.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022046696.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.421 kcal (2) G-P(sol) polarization free energy of solvation -31.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.504 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds