Wall clock time and date at job start Tue Mar 31 2020 01:35:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 S 1.70448 * 124.58963 * 2 1 4 4 C 1.75513 * 92.44454 * 179.97438 * 3 2 1 5 5 C 1.32769 * 110.57240 * 0.26604 * 4 3 2 6 6 C 1.36011 * 124.59187 * 179.97438 * 2 1 3 7 7 C 1.47188 * 123.46391 * 0.07597 * 6 2 1 8 8 O 1.21636 * 119.99611 * 359.97438 * 7 6 2 9 9 N 1.34777 * 120.00207 * 179.97438 * 7 6 2 10 10 C 1.46502 * 119.99702 * 179.97438 * 9 7 6 11 11 H 1.09001 * 112.85014 * 23.80877 * 10 9 7 12 12 C 1.53781 * 113.60964 * 155.00040 * 10 9 7 13 13 C 1.53775 * 87.08072 * 139.98103 * 12 10 9 14 14 H 1.09004 * 113.61660 * 89.11581 * 13 12 10 15 15 N 1.46498 * 113.61745 * 220.01437 * 13 12 10 16 16 C 1.36934 * 120.00698 * 204.99731 * 15 13 12 17 17 H 1.08006 * 119.99565 * 0.02562 * 16 15 13 18 18 C 1.38809 * 120.00605 * 180.02562 * 16 15 13 19 19 N 1.31620 * 119.99497 * 0.02562 * 18 16 15 20 20 Si 1.86791 * 120.00168 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47562 * 90.00042 * 20 18 16 22 22 H 1.48503 * 109.47104 * 210.00056 * 20 18 16 23 23 H 1.48501 * 109.47407 * 329.99859 * 20 18 16 24 24 C 1.53773 * 113.61424 * 252.49452 * 10 9 7 25 25 H 1.08993 * 109.47542 * 0.02562 * 1 2 3 26 26 H 1.08997 * 109.46994 * 120.02762 * 1 2 3 27 27 H 1.09007 * 109.47254 * 240.02933 * 1 2 3 28 28 H 1.08002 * 124.70940 * 179.97438 * 4 3 2 29 29 H 1.08000 * 123.45407 * 179.73409 * 5 4 3 30 30 H 0.96999 * 119.99613 * 359.97438 * 9 7 6 31 31 H 1.09002 * 113.61509 * 254.52644 * 12 10 9 32 32 H 1.08995 * 113.61688 * 25.34775 * 12 10 9 33 33 H 0.97001 * 119.99439 * 25.00557 * 15 13 12 34 34 H 0.97005 * 119.99717 * 179.97438 * 19 18 16 35 35 H 1.09003 * 113.61792 * 334.57256 * 24 10 9 36 36 H 1.09004 * 113.61495 * 105.47097 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4746 1.4032 0.0000 4 6 3.9607 0.4694 0.0008 5 6 3.6943 -0.8313 -0.0048 6 6 2.2791 -1.1197 0.0005 7 6 1.7291 -2.4849 -0.0005 8 8 0.5247 -2.6553 -0.0014 9 7 2.5598 -3.5462 -0.0005 10 6 2.0122 -4.9050 -0.0009 11 1 1.0018 -4.9540 -0.4067 12 6 2.9667 -5.9535 -0.5963 13 6 2.5061 -6.8963 0.5278 14 1 1.6302 -7.4908 0.2677 15 7 3.5893 -7.6983 1.1020 16 6 3.3094 -8.8949 1.7060 17 1 2.2899 -9.2477 1.7588 18 6 4.3357 -9.6545 2.2505 19 7 5.5779 -9.2242 2.1866 20 14 3.9538 -11.2871 3.0738 21 1 4.0169 -12.3763 2.0665 22 1 4.9488 -11.5457 4.1455 23 1 2.5921 -11.2372 3.6643 24 6 2.1747 -5.6350 1.3427 25 1 -0.3634 1.0276 -0.0005 26 1 -0.3633 -0.5142 -0.8897 27 1 -0.3634 -0.5134 0.8903 28 1 4.9537 0.8939 0.0006 29 1 4.4576 -1.5954 -0.0096 30 1 3.5203 -3.4102 -0.0001 31 1 2.6797 -6.2893 -1.5928 32 1 4.0182 -5.6742 -0.5303 33 1 4.5049 -7.3815 1.0543 34 1 6.2952 -9.7549 2.5675 35 1 3.0097 -5.2693 1.9403 36 1 1.2482 -5.7136 1.9117 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022046696.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:35:55 Heat of formation + Delta-G solvation = -0.313700 kcal Electronic energy + Delta-G solvation = -18822.897524 eV Core-core repulsion = 15819.447966 eV Total energy + Delta-G solvation = -3003.449558 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.22643 -39.60013 -37.75541 -35.80429 -34.30329 -32.82688 -31.82349 -28.34227 -26.56632 -26.37072 -25.00209 -23.32437 -22.36732 -21.04494 -20.12897 -19.12934 -18.25451 -17.68655 -17.20659 -16.46515 -16.20147 -15.98125 -15.68779 -14.96764 -14.74874 -14.59650 -14.30409 -14.25788 -13.59507 -13.56861 -13.31775 -13.16119 -13.06678 -12.82268 -12.55146 -12.23207 -12.17686 -12.06305 -11.98362 -11.74994 -11.50892 -10.89603 -10.79826 -10.05627 -9.72167 -9.36377 -8.98818 -7.95539 -5.23607 -0.19098 0.55637 0.95581 1.01428 1.48218 1.49156 1.57675 2.30059 2.34183 2.57581 3.36184 3.68194 3.72783 3.83712 3.86788 3.96567 4.16363 4.25829 4.31180 4.41106 4.63562 4.66309 4.72373 4.87594 4.89533 4.97683 5.05669 5.13872 5.15680 5.18661 5.30425 5.38367 5.51201 5.68132 6.27006 6.58929 7.23294 7.33571 8.08863 8.32657 9.27643 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.037635 B = 0.003016 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.814341 B = 9280.193840 C = 9687.571357 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.163 4.163 3 S 0.226 5.774 4 C -0.232 4.232 5 C -0.118 4.118 6 C -0.200 4.200 7 C 0.572 3.428 8 O -0.577 6.577 9 N -0.701 5.701 10 C 0.137 3.863 11 H 0.107 0.893 12 C -0.139 4.139 13 C 0.151 3.849 14 H 0.080 0.920 15 N -0.723 5.723 16 C -0.246 4.246 17 H 0.076 0.924 18 C -0.074 4.074 19 N -0.968 5.968 20 Si 0.971 3.029 21 H -0.286 1.286 22 H -0.296 1.296 23 H -0.271 1.271 24 C -0.170 4.170 25 H 0.088 0.912 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.197 0.803 29 H 0.163 0.837 30 H 0.410 0.590 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.376 0.624 34 H 0.251 0.749 35 H 0.069 0.931 36 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.625 23.856 -6.870 25.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.283 4.283 3 S 0.491 5.509 4 C -0.367 4.367 5 C -0.146 4.146 6 C -0.217 4.217 7 C 0.360 3.640 8 O -0.459 6.459 9 N -0.351 5.351 10 C 0.031 3.969 11 H 0.125 0.875 12 C -0.179 4.179 13 C 0.040 3.960 14 H 0.098 0.902 15 N -0.361 5.361 16 C -0.378 4.378 17 H 0.094 0.906 18 C -0.267 4.267 19 N -0.619 5.619 20 Si 0.800 3.200 21 H -0.213 1.213 22 H -0.223 1.223 23 H -0.196 1.196 24 C -0.212 4.212 25 H 0.106 0.894 26 H 0.092 0.908 27 H 0.088 0.912 28 H 0.215 0.785 29 H 0.180 0.820 30 H 0.247 0.753 31 H 0.101 0.899 32 H 0.106 0.894 33 H 0.208 0.792 34 H 0.060 0.940 35 H 0.088 0.912 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.840 25.097 -6.807 26.651 hybrid contribution 1.097 -2.603 0.665 2.902 sum -4.742 22.494 -6.141 23.795 Atomic orbital electron populations 1.20361 0.86727 1.02992 1.03398 1.24835 1.02472 0.98243 1.02773 1.82839 0.94039 1.05215 1.68763 1.25808 1.03674 0.96784 1.10388 1.21374 0.93681 0.97638 1.01888 1.20255 0.94261 0.92786 1.14414 1.18004 0.85890 0.84786 0.75318 1.90729 1.15928 1.86956 1.52284 1.45774 1.10309 1.05045 1.73957 1.22158 0.98507 0.79307 0.96889 0.87463 1.23667 0.99711 0.95121 0.99391 1.21659 0.91785 0.89565 0.92963 0.90212 1.42497 1.05407 1.20992 1.67208 1.19703 0.93448 0.96599 1.28013 0.90620 1.25537 0.95305 1.02596 1.03214 1.69803 0.99357 1.40287 1.52438 0.85170 0.77138 0.79958 0.77687 1.21311 1.22251 1.19623 1.24165 1.00818 0.98901 0.97304 0.89364 0.90820 0.91152 0.78549 0.81973 0.75292 0.89854 0.89429 0.79186 0.93986 0.91202 0.92857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.54 8.77 71.23 0.62 -0.92 16 2 C -0.16 -3.39 6.34 25.17 0.16 -3.23 16 3 S 0.23 3.09 22.95 -56.49 -1.30 1.80 16 4 C -0.23 -3.10 11.12 66.64 0.74 -2.36 16 5 C -0.12 -2.05 9.90 22.67 0.22 -1.83 16 6 C -0.20 -4.70 5.98 -19.87 -0.12 -4.82 16 7 C 0.57 16.64 7.79 86.59 0.67 17.31 16 8 O -0.58 -20.30 14.24 -4.14 -0.06 -20.36 16 9 N -0.70 -18.50 5.33 -443.53 -2.37 -20.87 16 10 C 0.14 4.09 4.24 45.51 0.19 4.28 16 11 H 0.11 3.34 7.46 -2.39 -0.02 3.33 16 12 C -0.14 -4.24 7.58 31.12 0.24 -4.01 16 13 C 0.15 5.85 4.48 45.52 0.20 6.06 16 14 H 0.08 3.08 8.10 -2.39 -0.02 3.06 16 15 N -0.72 -35.96 5.40 -320.46 -1.73 -37.69 16 16 C -0.25 -13.60 9.97 84.03 0.84 -12.76 16 17 H 0.08 4.04 7.83 -2.91 -0.02 4.01 16 18 C -0.07 -4.24 5.50 84.86 0.47 -3.77 16 19 N -0.97 -58.66 13.06 21.65 0.28 -58.38 16 20 Si 0.97 46.05 29.55 68.60 2.03 48.08 16 21 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 22 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 23 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 24 C -0.17 -6.02 7.68 31.12 0.24 -5.78 16 25 H 0.09 1.22 8.11 -2.39 -0.02 1.20 16 26 H 0.07 1.66 7.78 -2.39 -0.02 1.64 16 27 H 0.07 1.64 7.79 -2.38 -0.02 1.62 16 28 H 0.20 1.43 8.06 -2.91 -0.02 1.41 16 29 H 0.16 2.23 7.10 -2.91 -0.02 2.21 16 30 H 0.41 8.83 7.27 -92.71 -0.67 8.16 16 31 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 32 H 0.09 2.60 8.10 -2.39 -0.02 2.58 16 33 H 0.38 19.77 7.93 -92.71 -0.73 19.04 16 34 H 0.25 14.77 8.31 -92.70 -0.77 14.00 16 35 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 36 H 0.05 1.93 8.14 -2.38 -0.02 1.91 16 Total: -1.00 -68.78 319.47 1.04 -67.74 By element: Atomic # 1 Polarization: 31.80 SS G_CDS: -0.30 Total: 31.50 kcal Atomic # 6 Polarization: -16.30 SS G_CDS: 4.48 Total: -11.82 kcal Atomic # 7 Polarization: -113.12 SS G_CDS: -3.81 Total: -116.93 kcal Atomic # 8 Polarization: -20.30 SS G_CDS: -0.06 Total: -20.36 kcal Atomic # 14 Polarization: 46.05 SS G_CDS: 2.03 Total: 48.08 kcal Atomic # 16 Polarization: 3.09 SS G_CDS: -1.30 Total: 1.80 kcal Total: -68.78 1.04 -67.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022046696.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.421 kcal (2) G-P(sol) polarization free energy of solvation -68.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds