Wall clock time and date at job start Tue Mar 31 2020 01:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33818 * 124.52340 * 2 1 4 4 C 1.37481 * 115.10256 * 180.02562 * 3 2 1 5 5 C 1.50700 * 123.35235 * 179.97438 * 4 3 2 6 6 C 1.36651 * 113.29405 * 0.23302 * 4 3 2 7 7 C 1.46584 * 125.45405 * 179.74542 * 6 4 3 8 8 O 1.21705 * 120.00015 * 359.97438 * 7 6 4 9 9 N 1.34771 * 119.99627 * 179.97438 * 7 6 4 10 10 C 1.46504 * 120.00070 * 179.97438 * 9 7 6 11 11 C 1.53941 * 113.74567 * 253.74952 * 10 9 7 12 12 N 1.47819 * 86.03366 * 222.08214 * 11 10 9 13 13 C 1.36938 * 134.45511 * 204.63993 * 12 11 10 14 14 H 1.07997 * 120.00060 * 173.34858 * 13 12 11 15 15 C 1.38813 * 120.00098 * 353.35339 * 13 12 11 16 16 N 1.31622 * 119.99826 * 5.05573 * 15 13 12 17 17 Si 1.86799 * 120.00089 * 185.06366 * 15 13 12 18 18 H 1.48500 * 109.47352 * 94.98145 * 17 15 13 19 19 H 1.48495 * 109.46983 * 214.98425 * 17 15 13 20 20 H 1.48504 * 109.46917 * 334.98258 * 17 15 13 21 21 C 1.47586 * 91.05141 * 24.54862 * 12 11 10 22 22 S 1.70619 * 124.52518 * 180.02562 * 2 1 3 23 23 H 1.09005 * 109.46791 * 90.00139 * 1 2 3 24 24 H 1.09001 * 109.46839 * 210.00028 * 1 2 3 25 25 H 1.08996 * 109.47221 * 330.00003 * 1 2 3 26 26 H 1.07998 * 122.45013 * 0.04083 * 3 2 1 27 27 H 1.08996 * 109.47347 * 90.02034 * 5 4 3 28 28 H 1.08992 * 109.47090 * 210.02707 * 5 4 3 29 29 H 1.09011 * 109.46890 * 330.02265 * 5 4 3 30 30 H 0.96996 * 120.00444 * 0.02562 * 9 7 6 31 31 H 1.09009 * 112.93790 * 25.33827 * 10 9 7 32 32 H 1.09003 * 113.76874 * 336.33953 * 11 10 9 33 33 H 1.08996 * 113.77168 * 107.74418 * 11 10 9 34 34 H 0.96999 * 119.99976 * 180.02562 * 16 15 13 35 35 H 1.08995 * 113.76311 * 221.15299 * 21 12 11 36 36 H 1.08997 * 113.76758 * 89.75199 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2654 1.1025 0.0000 4 6 3.6216 0.8775 -0.0006 5 6 4.6450 1.9837 -0.0012 6 6 3.9493 -0.4491 -0.0061 7 6 5.3123 -0.9883 -0.0133 8 8 6.2659 -0.2320 -0.0152 9 7 5.5096 -2.3215 -0.0179 10 6 6.8719 -2.8604 -0.0256 11 6 7.2970 -3.4514 -1.3820 12 7 7.8998 -4.5502 -0.5982 13 6 8.9127 -5.4442 -0.8219 14 1 9.2397 -6.0995 -0.0281 15 6 9.5193 -5.5082 -2.0688 16 7 9.1907 -4.6439 -3.0056 17 14 10.8018 -6.8209 -2.4174 18 1 10.1520 -7.9878 -3.0664 19 1 11.8428 -6.2683 -3.3207 20 1 11.4300 -7.2501 -1.1421 21 6 6.9738 -4.2954 0.5223 22 16 2.4740 -1.4057 -0.0006 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8899 0.5138 26 1 1.8429 2.0965 0.0006 27 1 4.8925 2.2504 1.0262 28 1 5.5446 1.6461 -0.5158 29 1 4.2380 2.8549 -0.5147 30 1 4.7496 -2.9242 -0.0167 31 1 7.6027 -2.1742 0.4025 32 1 6.4602 -3.7649 -2.0063 33 1 8.0245 -2.8421 -1.9181 34 1 9.6143 -4.6889 -3.8771 35 1 7.4439 -4.3587 1.5037 36 1 6.0419 -4.8572 0.4586 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030376251.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:18:43 Heat of formation + Delta-G solvation = 44.551493 kcal Electronic energy + Delta-G solvation = -19010.707926 eV Core-core repulsion = 16009.203869 eV Total energy + Delta-G solvation = -3001.504057 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.75332 -38.36761 -37.22710 -33.55592 -32.79962 -31.83494 -28.62099 -27.94848 -26.85113 -24.83935 -23.32044 -22.15838 -21.18140 -19.83400 -18.59711 -17.70578 -16.76379 -16.00329 -15.65165 -15.09772 -14.78865 -14.57940 -14.06287 -13.82916 -13.71744 -13.18615 -13.13474 -13.04670 -12.66330 -12.02243 -11.81117 -11.76852 -11.72802 -11.48048 -11.43623 -10.93238 -10.87661 -10.79318 -10.46667 -10.03984 -9.58035 -9.51579 -8.80936 -8.78473 -8.51691 -8.38574 -6.91843 -5.79336 -3.12593 0.46581 1.38114 1.79306 2.31198 3.37883 3.40144 3.42343 3.46655 3.49464 4.45655 4.51251 4.88580 4.97030 5.12518 5.15903 5.18617 5.28710 5.45421 5.51972 5.57438 5.58707 5.74694 5.88566 5.97747 6.00375 6.19323 6.30868 6.38958 6.48505 6.57497 6.74729 7.22984 7.33888 7.54645 7.82258 7.94864 8.47587 9.01629 9.67975 10.55208 11.37953 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.034881 B = 0.003558 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.538538 B = 7868.796634 C = 8227.624629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.199 4.199 3 C -0.153 4.153 4 C -0.022 4.022 5 C -0.105 4.105 6 C -0.267 4.267 7 C 0.587 3.413 8 O -0.529 6.529 9 N -0.711 5.711 10 C 0.092 3.908 11 C 0.157 3.843 12 N -0.606 5.606 13 C -0.227 4.227 14 H 0.082 0.918 15 C -0.005 4.005 16 N -0.916 5.916 17 Si 0.913 3.087 18 H -0.289 1.289 19 H -0.290 1.290 20 H -0.279 1.279 21 C 0.112 3.888 22 S 0.192 5.808 23 H 0.077 0.923 24 H 0.070 0.930 25 H 0.077 0.923 26 H 0.141 0.859 27 H 0.073 0.927 28 H 0.096 0.904 29 H 0.062 0.938 30 H 0.393 0.607 31 H 0.113 0.887 32 H 0.031 0.969 33 H 0.074 0.926 34 H 0.255 0.745 35 H 0.051 0.949 36 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.371 10.285 6.826 22.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.319 4.319 3 C -0.184 4.184 4 C -0.037 4.037 5 C -0.164 4.164 6 C -0.387 4.387 7 C 0.373 3.627 8 O -0.407 6.407 9 N -0.361 5.361 10 C -0.012 4.012 11 C 0.031 3.969 12 N -0.333 5.333 13 C -0.354 4.354 14 H 0.100 0.900 15 C -0.202 4.202 16 N -0.562 5.562 17 Si 0.743 3.257 18 H -0.216 1.216 19 H -0.216 1.216 20 H -0.205 1.205 21 C -0.015 4.015 22 S 0.461 5.539 23 H 0.095 0.905 24 H 0.089 0.911 25 H 0.096 0.904 26 H 0.159 0.841 27 H 0.092 0.908 28 H 0.114 0.886 29 H 0.081 0.919 30 H 0.226 0.774 31 H 0.131 0.869 32 H 0.049 0.951 33 H 0.092 0.908 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -17.719 9.058 6.637 20.977 hybrid contribution 0.344 0.427 -0.374 0.664 sum -17.374 9.485 6.263 20.762 Atomic orbital electron populations 1.20375 0.87531 1.03326 1.03010 1.24139 1.01361 0.97971 1.08382 1.19827 0.92206 0.99471 1.06929 1.19477 0.94645 0.93527 0.96051 1.20737 0.98189 0.94499 1.02941 1.24523 0.97109 0.97386 1.19691 1.16931 0.86414 0.82697 0.76623 1.90769 1.41760 1.57664 1.50553 1.46050 1.09999 1.05744 1.74307 1.23984 0.81532 0.94504 1.01227 1.22664 0.95144 0.87753 0.91386 1.45704 1.34620 1.37987 1.14997 1.18989 1.08004 1.12243 0.96213 0.89978 1.24859 1.00350 0.99200 0.95811 1.69851 1.45392 1.36472 1.04501 0.86092 0.80611 0.81116 0.77903 1.21572 1.21630 1.20468 1.22877 0.93629 0.91347 0.93634 1.82977 0.94456 1.07548 1.68967 0.90461 0.91133 0.90442 0.84097 0.90828 0.88574 0.91917 0.77359 0.86905 0.95147 0.90788 0.93504 0.93125 0.94721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.54 10.31 36.00 0.37 -0.17 16 2 C -0.20 -1.94 6.28 -35.86 -0.23 -2.16 16 3 C -0.15 -1.61 9.82 -41.41 -0.41 -2.02 16 4 C -0.02 -0.29 5.91 -105.47 -0.62 -0.91 16 5 C -0.11 -1.29 9.56 36.01 0.34 -0.94 16 6 C -0.27 -3.78 6.45 -36.79 -0.24 -4.02 16 7 C 0.59 10.11 7.78 -12.90 -0.10 10.01 16 8 O -0.53 -10.63 13.86 5.18 0.07 -10.56 16 9 N -0.71 -11.85 5.37 -56.68 -0.30 -12.15 16 10 C 0.09 1.84 4.40 -70.15 -0.31 1.53 16 11 C 0.16 3.83 7.24 -2.84 -0.02 3.81 16 12 N -0.61 -15.75 3.70 -177.89 -0.66 -16.41 16 13 C -0.23 -6.43 10.70 -15.06 -0.16 -6.59 16 14 H 0.08 2.22 7.83 -52.49 -0.41 1.81 16 15 C 0.00 -0.14 5.50 -17.43 -0.10 -0.24 16 16 N -0.92 -27.61 11.51 55.49 0.64 -26.97 16 17 Si 0.91 22.25 29.56 -169.99 -5.02 17.23 16 18 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 19 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 21 C 0.11 2.28 8.69 -2.96 -0.03 2.25 16 22 S 0.19 2.08 22.10 -107.50 -2.38 -0.29 16 23 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 24 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 26 H 0.14 1.16 8.06 -52.49 -0.42 0.73 16 27 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.10 1.43 6.00 -51.93 -0.31 1.12 16 29 H 0.06 0.61 8.14 -51.92 -0.42 0.19 16 30 H 0.39 5.58 7.83 -40.82 -0.32 5.26 16 31 H 0.11 2.41 7.51 -51.92 -0.39 2.02 16 32 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.07 2.03 7.37 -51.93 -0.38 1.65 16 34 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 35 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.04 0.65 8.11 -51.93 -0.42 0.23 16 LS Contribution 318.04 15.07 4.79 4.79 Total: -1.00 -32.85 318.04 -9.10 -41.95 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -4.75 Total: 1.88 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: -1.49 Total: 0.54 kcal Atomic # 7 Polarization: -55.21 SS G_CDS: -0.32 Total: -55.53 kcal Atomic # 8 Polarization: -10.63 SS G_CDS: 0.07 Total: -10.56 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.23 kcal Atomic # 16 Polarization: 2.08 SS G_CDS: -2.38 Total: -0.29 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -32.85 -9.10 -41.95 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030376251.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.498 kcal (2) G-P(sol) polarization free energy of solvation -32.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.947 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds