Wall clock time and date at job start Tue Mar 31 2020 01:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.33818 * 124.52340 * 2 1 4 4 C 1.37481 * 115.10256 * 180.02562 * 3 2 1 5 5 C 1.50700 * 123.35235 * 179.97438 * 4 3 2 6 6 C 1.36651 * 113.29405 * 0.23302 * 4 3 2 7 7 C 1.46584 * 125.45405 * 179.74542 * 6 4 3 8 8 O 1.21705 * 120.00015 * 359.97438 * 7 6 4 9 9 N 1.34771 * 119.99627 * 179.97438 * 7 6 4 10 10 C 1.46504 * 120.00070 * 179.97438 * 9 7 6 11 11 C 1.53941 * 113.74567 * 253.74952 * 10 9 7 12 12 N 1.47819 * 86.03366 * 222.08214 * 11 10 9 13 13 C 1.36938 * 134.45511 * 204.63993 * 12 11 10 14 14 H 1.07997 * 120.00060 * 173.34858 * 13 12 11 15 15 C 1.38813 * 120.00098 * 353.35339 * 13 12 11 16 16 N 1.31622 * 119.99826 * 5.05573 * 15 13 12 17 17 Si 1.86799 * 120.00089 * 185.06366 * 15 13 12 18 18 H 1.48500 * 109.47352 * 94.98145 * 17 15 13 19 19 H 1.48495 * 109.46983 * 214.98425 * 17 15 13 20 20 H 1.48504 * 109.46917 * 334.98258 * 17 15 13 21 21 C 1.47586 * 91.05141 * 24.54862 * 12 11 10 22 22 S 1.70619 * 124.52518 * 180.02562 * 2 1 3 23 23 H 1.09005 * 109.46791 * 90.00139 * 1 2 3 24 24 H 1.09001 * 109.46839 * 210.00028 * 1 2 3 25 25 H 1.08996 * 109.47221 * 330.00003 * 1 2 3 26 26 H 1.07998 * 122.45013 * 0.04083 * 3 2 1 27 27 H 1.08996 * 109.47347 * 90.02034 * 5 4 3 28 28 H 1.08992 * 109.47090 * 210.02707 * 5 4 3 29 29 H 1.09011 * 109.46890 * 330.02265 * 5 4 3 30 30 H 0.96996 * 120.00444 * 0.02562 * 9 7 6 31 31 H 1.09009 * 112.93790 * 25.33827 * 10 9 7 32 32 H 1.09003 * 113.76874 * 336.33953 * 11 10 9 33 33 H 1.08996 * 113.77168 * 107.74418 * 11 10 9 34 34 H 0.96999 * 119.99976 * 180.02562 * 16 15 13 35 35 H 1.08995 * 113.76311 * 221.15299 * 21 12 11 36 36 H 1.08997 * 113.76758 * 89.75199 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2654 1.1025 0.0000 4 6 3.6216 0.8775 -0.0006 5 6 4.6450 1.9837 -0.0012 6 6 3.9493 -0.4491 -0.0061 7 6 5.3123 -0.9883 -0.0133 8 8 6.2659 -0.2320 -0.0152 9 7 5.5096 -2.3215 -0.0179 10 6 6.8719 -2.8604 -0.0256 11 6 7.2970 -3.4514 -1.3820 12 7 7.8998 -4.5502 -0.5982 13 6 8.9127 -5.4442 -0.8219 14 1 9.2397 -6.0995 -0.0281 15 6 9.5193 -5.5082 -2.0688 16 7 9.1907 -4.6439 -3.0056 17 14 10.8018 -6.8209 -2.4174 18 1 10.1520 -7.9878 -3.0664 19 1 11.8428 -6.2683 -3.3207 20 1 11.4300 -7.2501 -1.1421 21 6 6.9738 -4.2954 0.5223 22 16 2.4740 -1.4057 -0.0006 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8899 0.5138 26 1 1.8429 2.0965 0.0006 27 1 4.8925 2.2504 1.0262 28 1 5.5446 1.6461 -0.5158 29 1 4.2380 2.8549 -0.5147 30 1 4.7496 -2.9242 -0.0167 31 1 7.6027 -2.1742 0.4025 32 1 6.4602 -3.7649 -2.0063 33 1 8.0245 -2.8421 -1.9181 34 1 9.6143 -4.6889 -3.8771 35 1 7.4439 -4.3587 1.5037 36 1 6.0419 -4.8572 0.4586 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030376251.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:18:42 Heat of formation + Delta-G solvation = 22.881201 kcal Electronic energy + Delta-G solvation = -19011.647620 eV Core-core repulsion = 16009.203869 eV Total energy + Delta-G solvation = -3002.443751 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.13132 -39.67544 -38.61845 -35.21348 -33.87234 -33.52048 -29.98562 -29.13595 -28.15773 -26.67068 -25.08859 -22.98410 -22.54465 -21.48910 -19.86443 -18.85614 -18.67796 -17.19505 -17.04173 -16.93610 -16.16510 -15.75947 -15.64777 -14.99942 -14.80492 -14.57476 -14.12727 -13.95210 -13.82561 -13.54258 -13.35934 -13.27035 -12.84244 -12.76273 -12.66549 -12.59102 -12.50839 -12.32504 -11.95376 -11.77544 -11.54661 -10.95835 -10.88561 -10.11289 -9.55283 -9.35885 -8.99612 -7.94995 -5.30226 -0.48660 0.49625 0.91954 1.38416 1.45163 1.47660 1.56955 2.06133 2.15719 2.48623 3.21051 3.37385 3.78381 3.79720 3.83902 4.22496 4.25004 4.32296 4.46475 4.57961 4.66964 4.70777 4.75984 4.79947 4.86604 5.00694 5.08309 5.10580 5.18429 5.21043 5.42261 5.45306 5.55220 5.63625 5.85464 6.47322 6.85345 7.14577 7.55408 8.48646 9.22594 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.034881 B = 0.003558 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.538538 B = 7868.796634 C = 8227.624629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.181 4.181 3 C -0.166 4.166 4 C -0.020 4.020 5 C -0.105 4.105 6 C -0.314 4.314 7 C 0.585 3.415 8 O -0.568 6.568 9 N -0.703 5.703 10 C 0.120 3.880 11 C 0.155 3.845 12 N -0.637 5.637 13 C -0.238 4.238 14 H 0.092 0.908 15 C -0.068 4.068 16 N -0.954 5.954 17 Si 0.984 3.016 18 H -0.285 1.285 19 H -0.296 1.296 20 H -0.263 1.263 21 C 0.122 3.878 22 S 0.218 5.782 23 H 0.090 0.910 24 H 0.081 0.919 25 H 0.096 0.904 26 H 0.168 0.832 27 H 0.078 0.922 28 H 0.063 0.937 29 H 0.089 0.911 30 H 0.407 0.593 31 H 0.097 0.903 32 H 0.025 0.975 33 H 0.031 0.969 34 H 0.249 0.751 35 H 0.069 0.931 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.021 10.079 8.069 24.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.301 4.301 3 C -0.196 4.196 4 C -0.036 4.036 5 C -0.163 4.163 6 C -0.434 4.434 7 C 0.374 3.626 8 O -0.450 6.450 9 N -0.354 5.354 10 C 0.014 3.986 11 C 0.029 3.971 12 N -0.364 5.364 13 C -0.366 4.366 14 H 0.110 0.890 15 C -0.261 4.261 16 N -0.602 5.602 17 Si 0.811 3.189 18 H -0.212 1.212 19 H -0.223 1.223 20 H -0.188 1.188 21 C -0.003 4.003 22 S 0.487 5.513 23 H 0.109 0.891 24 H 0.100 0.900 25 H 0.115 0.885 26 H 0.186 0.814 27 H 0.096 0.904 28 H 0.082 0.918 29 H 0.107 0.893 30 H 0.243 0.757 31 H 0.115 0.885 32 H 0.043 0.957 33 H 0.049 0.951 34 H 0.058 0.942 35 H 0.087 0.913 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -20.418 8.836 7.925 23.617 hybrid contribution 1.015 0.577 -0.722 1.373 sum -19.403 9.412 7.203 22.736 Atomic orbital electron populations 1.20568 0.84775 1.04881 1.04293 1.24680 1.03063 0.97058 1.05258 1.20011 0.90936 1.01103 1.07560 1.19782 0.96027 0.93094 0.94688 1.20711 0.97098 0.95433 1.03094 1.24271 0.96751 0.98716 1.23619 1.17384 0.87587 0.82238 0.75391 1.90749 1.43543 1.58436 1.52251 1.45784 1.08969 1.06164 1.74467 1.23276 0.83002 0.94459 0.97820 1.22533 0.93922 0.87708 0.92983 1.46019 1.35438 1.38054 1.16898 1.19449 1.08486 1.12099 0.96532 0.89031 1.25771 1.03042 1.01479 0.95838 1.70060 1.47078 1.38421 1.04669 0.84983 0.77768 0.78136 0.77976 1.21169 1.22296 1.18755 1.23011 0.93634 0.90912 0.92763 1.82820 0.92566 1.07466 1.68422 0.89125 0.89965 0.88542 0.81434 0.90394 0.91807 0.89273 0.75686 0.88457 0.95738 0.95067 0.94201 0.91316 0.91815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.75 10.31 71.23 0.73 -0.01 16 2 C -0.18 -2.91 6.28 24.68 0.15 -2.76 16 3 C -0.17 -3.01 9.82 21.09 0.21 -2.81 16 4 C -0.02 -0.50 5.91 -20.41 -0.12 -0.62 16 5 C -0.11 -2.55 9.56 71.24 0.68 -1.87 16 6 C -0.31 -8.75 6.45 24.08 0.16 -8.60 16 7 C 0.59 20.61 7.78 86.42 0.67 21.28 16 8 O -0.57 -24.02 13.86 -4.36 -0.06 -24.08 16 9 N -0.70 -23.51 5.37 -451.47 -2.42 -25.93 16 10 C 0.12 4.90 4.40 46.75 0.21 5.11 16 11 C 0.16 7.89 7.24 86.44 0.63 8.52 16 12 N -0.64 -33.48 3.70 -716.73 -2.65 -36.13 16 13 C -0.24 -13.54 10.70 84.03 0.90 -12.64 16 14 H 0.09 4.90 7.83 -2.91 -0.02 4.87 16 15 C -0.07 -3.97 5.50 84.86 0.47 -3.51 16 16 N -0.95 -59.60 11.51 21.65 0.25 -59.35 16 17 Si 0.98 46.35 29.56 68.60 2.03 48.38 16 18 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 19 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 20 H -0.26 -11.56 7.11 99.48 0.71 -10.86 16 21 C 0.12 4.84 8.69 86.48 0.75 5.59 16 22 S 0.22 4.28 22.10 -56.49 -1.25 3.03 16 23 H 0.09 0.63 8.14 -2.38 -0.02 0.61 16 24 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 25 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 26 H 0.17 2.09 8.06 -2.91 -0.02 2.07 16 27 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.06 2.00 6.00 -2.39 -0.01 1.98 16 29 H 0.09 1.62 8.14 -2.38 -0.02 1.60 16 30 H 0.41 11.20 7.83 -92.71 -0.73 10.47 16 31 H 0.10 4.31 7.51 -2.38 -0.02 4.29 16 32 H 0.02 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.03 1.82 7.37 -2.39 -0.02 1.81 16 34 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 35 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 36 H 0.06 2.22 8.11 -2.39 -0.02 2.20 16 Total: -1.00 -74.00 318.04 1.70 -72.30 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: 0.37 Total: 14.09 kcal Atomic # 6 Polarization: 2.25 SS G_CDS: 5.43 Total: 7.69 kcal Atomic # 7 Polarization: -116.59 SS G_CDS: -4.83 Total: -121.41 kcal Atomic # 8 Polarization: -24.02 SS G_CDS: -0.06 Total: -24.08 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Atomic # 16 Polarization: 4.28 SS G_CDS: -1.25 Total: 3.03 kcal Total: -74.00 1.70 -72.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030376251.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.184 kcal (2) G-P(sol) polarization free energy of solvation -74.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds