Wall clock time and date at job start Tue Mar 31 2020 01:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50698 * 109.47184 * 2 1 4 4 C 1.33826 * 124.51944 * 89.72560 * 3 2 1 5 5 C 1.37466 * 115.10044 * 179.82608 * 4 3 2 6 6 C 1.36648 * 113.29631 * 0.45223 * 5 4 3 7 7 C 1.46583 * 125.45980 * 179.71829 * 6 5 4 8 8 O 1.21698 * 119.99975 * 0.02562 * 7 6 5 9 9 N 1.34775 * 120.00037 * 180.02562 * 7 6 5 10 10 C 1.46501 * 119.99639 * 180.02562 * 9 7 6 11 11 C 1.53943 * 113.74414 * 253.73806 * 10 9 7 12 12 N 1.47811 * 86.04125 * 222.08715 * 11 10 9 13 13 C 1.36940 * 134.45813 * 204.64104 * 12 11 10 14 14 H 1.07997 * 119.99702 * 179.86536 * 13 12 11 15 15 C 1.38806 * 119.99723 * 359.87288 * 13 12 11 16 16 N 1.31617 * 120.00222 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99773 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.47070 * 89.99713 * 17 15 13 19 19 H 1.48501 * 109.47071 * 210.00023 * 17 15 13 20 20 H 1.48501 * 109.46827 * 329.99701 * 17 15 13 21 21 C 1.47579 * 91.04586 * 24.55076 * 12 11 10 22 22 S 1.70613 * 124.52630 * 270.03034 * 3 2 1 23 23 H 1.09001 * 109.47002 * 299.99404 * 1 2 3 24 24 H 1.08993 * 109.46955 * 59.99842 * 1 2 3 25 25 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.46801 * 120.00442 * 2 1 3 27 27 H 1.09001 * 109.46998 * 240.00038 * 2 1 3 28 28 H 1.07996 * 122.44587 * 359.97438 * 4 3 2 29 29 H 1.07999 * 123.35186 * 180.22685 * 5 4 3 30 30 H 0.97001 * 120.00143 * 0.02562 * 9 7 6 31 31 H 1.08994 * 112.94754 * 25.33889 * 10 9 7 32 32 H 1.08999 * 113.77250 * 336.35804 * 11 10 9 33 33 H 1.08999 * 113.76725 * 107.74911 * 11 10 9 34 34 H 0.97005 * 119.99883 * 179.97438 * 16 15 13 35 35 H 1.09002 * 113.76462 * 221.14556 * 21 12 11 36 36 H 1.09006 * 113.77034 * 89.75681 * 21 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2802 2.1375 1.1026 5 6 2.7369 3.4145 0.8777 6 6 2.8457 3.7237 -0.4489 7 6 3.2988 5.0092 -0.9881 8 8 3.6162 5.9083 -0.2318 9 7 3.3637 5.1956 -2.3213 10 6 3.8171 6.4803 -2.8601 11 6 2.6848 7.3375 -3.4542 12 7 3.6282 7.6400 -4.5512 13 6 3.7612 8.6684 -5.4456 14 1 4.5621 8.6538 -6.1699 15 6 2.8665 9.7294 -5.4212 16 7 1.8902 9.7468 -4.5387 17 14 3.0483 11.1326 -6.6408 18 1 2.2683 10.8268 -7.8669 19 1 2.5401 12.3876 -6.0309 20 1 4.4811 11.2987 -6.9942 21 6 4.3702 6.3905 -4.2939 22 16 2.3541 2.3327 -1.4056 23 1 -0.3633 0.5137 0.8901 24 1 -0.3633 0.5138 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8933 -0.5139 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 2.1345 1.7409 2.0965 29 1 2.9816 4.1058 1.6705 30 1 3.1103 4.4791 -2.9241 31 1 4.4652 7.0243 -2.1730 32 1 1.8155 6.7602 -3.7689 33 1 2.4242 8.2037 -2.8460 34 1 1.2653 10.4885 -4.5214 35 1 5.4528 6.5020 -4.3551 36 1 3.9971 5.5343 -4.8560 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030626903.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:37:16 Heat of formation + Delta-G solvation = 21.982532 kcal Electronic energy + Delta-G solvation = -18739.966007 eV Core-core repulsion = 15737.483286 eV Total energy + Delta-G solvation = -3002.482721 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.08376 -39.51102 -38.62768 -35.23290 -34.64014 -33.78323 -30.21666 -29.11077 -26.67414 -26.44220 -24.90287 -23.23501 -22.54848 -21.50096 -20.07814 -18.98065 -18.76896 -17.43236 -17.01719 -16.93168 -16.18008 -15.99568 -15.71766 -15.20888 -14.93001 -14.65430 -14.36151 -13.93963 -13.65117 -13.37909 -13.27050 -13.24328 -12.85603 -12.81474 -12.64451 -12.39648 -12.32743 -12.06091 -11.96042 -11.66731 -11.56595 -11.17959 -10.90612 -10.14985 -9.62797 -9.51877 -9.00478 -7.93292 -5.29446 -0.50663 0.46290 0.91129 1.39460 1.45186 1.48203 1.56989 2.03211 2.15929 2.48447 3.22202 3.37001 3.71651 3.78394 3.82559 4.16945 4.28054 4.35911 4.43185 4.45536 4.51255 4.70117 4.82384 4.86175 4.94439 5.04403 5.07422 5.16585 5.19654 5.22860 5.37553 5.44637 5.45457 5.61332 5.86228 6.43528 6.85809 7.09732 7.56104 8.48349 9.23548 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.037338 B = 0.003275 C = 0.003200 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 749.720930 B = 8547.738115 C = 8748.167053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.056 4.056 3 C -0.181 4.181 4 C -0.161 4.161 5 C -0.053 4.053 6 C -0.302 4.302 7 C 0.585 3.415 8 O -0.579 6.579 9 N -0.700 5.700 10 C 0.118 3.882 11 C 0.152 3.848 12 N -0.637 5.637 13 C -0.236 4.236 14 H 0.092 0.908 15 C -0.070 4.070 16 N -0.956 5.956 17 Si 0.985 3.015 18 H -0.283 1.283 19 H -0.296 1.296 20 H -0.265 1.265 21 C 0.123 3.877 22 S 0.231 5.769 23 H 0.056 0.944 24 H 0.050 0.950 25 H 0.079 0.921 26 H 0.102 0.898 27 H 0.087 0.913 28 H 0.168 0.832 29 H 0.146 0.854 30 H 0.409 0.591 31 H 0.096 0.904 32 H 0.026 0.974 33 H 0.035 0.965 34 H 0.249 0.751 35 H 0.069 0.931 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.618 -24.101 8.727 25.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.095 4.095 3 C -0.301 4.301 4 C -0.191 4.191 5 C -0.087 4.087 6 C -0.422 4.422 7 C 0.374 3.626 8 O -0.461 6.461 9 N -0.351 5.351 10 C 0.012 3.988 11 C 0.025 3.975 12 N -0.364 5.364 13 C -0.364 4.364 14 H 0.110 0.890 15 C -0.263 4.263 16 N -0.604 5.604 17 Si 0.813 3.187 18 H -0.210 1.210 19 H -0.223 1.223 20 H -0.189 1.189 21 C -0.002 4.002 22 S 0.500 5.500 23 H 0.075 0.925 24 H 0.069 0.931 25 H 0.098 0.902 26 H 0.120 0.880 27 H 0.106 0.894 28 H 0.185 0.815 29 H 0.164 0.836 30 H 0.245 0.755 31 H 0.114 0.886 32 H 0.044 0.956 33 H 0.053 0.947 34 H 0.058 0.942 35 H 0.087 0.913 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.539 -23.458 7.503 24.635 hybrid contribution -0.277 1.336 0.791 1.577 sum -0.816 -22.123 8.293 23.640 Atomic orbital electron populations 1.21824 0.93644 1.03124 1.02187 1.20317 0.96567 0.87577 1.05026 1.24737 1.05194 1.03065 0.97149 1.20103 1.04876 0.93103 1.01004 1.20946 0.95872 0.97188 0.94720 1.24446 1.19005 0.99476 0.99301 1.17453 0.76673 0.86217 0.82301 1.90793 1.51560 1.44715 1.58996 1.45769 1.66990 1.16233 1.06100 1.23286 0.97255 0.83677 0.94544 1.22593 0.92126 0.94847 0.87917 1.46030 1.32504 1.19583 1.38299 1.19451 1.10769 0.96749 1.09457 0.88980 1.25751 0.97491 1.01600 1.01432 1.70048 1.18724 1.32887 1.38739 0.84984 0.78162 0.77847 0.77746 1.21004 1.22297 1.18917 1.23016 0.97392 0.89065 0.90745 1.82820 1.59147 1.00646 1.07414 0.92484 0.93118 0.90192 0.87960 0.89403 0.81466 0.83648 0.75477 0.88614 0.95630 0.94693 0.94245 0.91292 0.91583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 9.90 71.98 0.71 -0.67 16 2 C -0.06 -0.52 6.36 29.85 0.19 -0.33 16 3 C -0.18 -2.83 5.53 24.68 0.14 -2.70 16 4 C -0.16 -2.79 10.00 21.08 0.21 -2.58 16 5 C -0.05 -1.27 10.01 21.72 0.22 -1.05 16 6 C -0.30 -8.19 6.45 24.08 0.16 -8.04 16 7 C 0.59 20.63 7.78 86.42 0.67 21.31 16 8 O -0.58 -25.36 16.46 -4.34 -0.07 -25.43 16 9 N -0.70 -23.20 5.37 -451.45 -2.42 -25.62 16 10 C 0.12 4.82 4.40 46.74 0.21 5.03 16 11 C 0.15 7.70 7.32 86.44 0.63 8.33 16 12 N -0.64 -33.37 3.70 -716.63 -2.65 -36.02 16 13 C -0.24 -13.42 10.70 84.03 0.90 -12.52 16 14 H 0.09 4.89 7.83 -2.91 -0.02 4.87 16 15 C -0.07 -4.07 5.50 84.86 0.47 -3.60 16 16 N -0.96 -59.69 11.39 21.65 0.25 -59.45 16 17 Si 0.99 46.39 29.55 68.60 2.03 48.42 16 18 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 19 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 20 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 21 C 0.12 4.84 8.69 86.49 0.75 5.59 16 22 S 0.23 4.33 22.10 -56.49 -1.25 3.08 16 23 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 24 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 25 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 26 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.17 1.99 8.06 -2.91 -0.02 1.96 16 29 H 0.15 3.57 8.06 -2.91 -0.02 3.54 16 30 H 0.41 10.92 7.83 -92.71 -0.73 10.19 16 31 H 0.10 4.28 7.50 -2.39 -0.02 4.27 16 32 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.03 2.05 7.17 -2.39 -0.02 2.03 16 34 H 0.25 15.09 8.31 -92.70 -0.77 14.32 16 35 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 36 H 0.07 2.25 8.11 -2.38 -0.02 2.23 16 Total: -1.00 -74.40 322.40 1.49 -72.90 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: 0.36 Total: 13.36 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: 5.25 Total: 8.76 kcal Atomic # 7 Polarization: -116.26 SS G_CDS: -4.83 Total: -121.10 kcal Atomic # 8 Polarization: -25.36 SS G_CDS: -0.07 Total: -25.43 kcal Atomic # 14 Polarization: 46.39 SS G_CDS: 2.03 Total: 48.42 kcal Atomic # 16 Polarization: 4.33 SS G_CDS: -1.25 Total: 3.08 kcal Total: -74.40 1.49 -72.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030626903.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.887 kcal (2) G-P(sol) polarization free energy of solvation -74.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds