Wall clock time and date at job start Tue Mar 31 2020 01:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32763 * 124.71477 * 2 1 4 4 C 1.44427 * 113.08603 * 180.02562 * 3 2 1 5 5 C 1.47193 * 123.46113 * 180.02562 * 4 3 2 6 6 O 1.21634 * 119.99493 * 179.97438 * 5 4 3 7 7 N 1.34774 * 120.00138 * 359.97438 * 5 4 3 8 8 C 1.46493 * 119.99924 * 180.02562 * 7 5 4 9 9 C 1.53948 * 113.74130 * 253.73797 * 8 7 5 10 10 N 1.47813 * 86.03874 * 222.08604 * 9 8 7 11 11 C 1.36935 * 134.45858 * 204.64677 * 10 9 8 12 12 H 1.07994 * 120.00165 * 179.86563 * 11 10 9 13 13 C 1.38811 * 119.99888 * 359.86406 * 11 10 9 14 14 N 1.31617 * 120.00240 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99961 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47524 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47438 * 119.99732 * 15 13 11 18 18 H 1.48510 * 109.46947 * 239.99617 * 15 13 11 19 19 C 1.47581 * 91.05071 * 24.54883 * 10 9 8 20 20 C 1.36010 * 113.07821 * 359.97438 * 4 3 2 21 21 C 1.50694 * 124.59313 * 179.97438 * 20 4 3 22 22 S 1.70447 * 110.81546 * 0.02562 * 20 4 3 23 23 H 1.09002 * 109.47120 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.46738 * 299.99782 * 1 2 3 25 25 H 1.08998 * 109.47156 * 59.99343 * 1 2 3 26 26 H 1.07999 * 123.46129 * 0.04563 * 3 2 1 27 27 H 0.97001 * 119.99541 * 359.97438 * 7 5 4 28 28 H 1.09000 * 112.95049 * 25.32738 * 8 7 5 29 29 H 1.09003 * 113.76870 * 336.34926 * 9 8 7 30 30 H 1.08998 * 113.76938 * 107.74501 * 9 8 7 31 31 H 0.96993 * 120.00683 * 180.02562 * 14 13 11 32 32 H 1.08999 * 113.76869 * 221.15711 * 19 10 9 33 33 H 1.08998 * 113.77055 * 89.75533 * 19 10 9 34 34 H 1.08999 * 109.46984 * 180.02562 * 21 20 4 35 35 H 1.09000 * 109.47495 * 300.03360 * 21 20 4 36 36 H 1.09007 * 109.46884 * 60.03385 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2631 1.0913 0.0000 4 6 3.6777 0.8002 -0.0006 5 6 4.7201 1.8394 -0.0002 6 8 5.8945 1.5226 -0.0002 7 7 4.3734 3.1417 0.0003 8 6 5.4109 4.1759 0.0002 9 6 5.5718 4.8926 1.3531 10 7 5.6876 6.1371 0.5639 11 6 6.2645 7.3599 0.7805 12 1 6.2099 8.1250 0.0203 13 6 6.9195 7.6162 1.9773 14 7 6.9856 6.6839 2.9040 15 14 7.7058 9.2846 2.2731 16 1 7.4923 10.1501 1.0855 17 1 7.0883 9.9185 3.4656 18 1 9.1627 9.1113 2.5032 19 6 4.9344 5.5319 -0.5516 20 6 3.9477 -0.5328 -0.0005 21 6 5.3333 -1.1251 -0.0016 22 16 2.5064 -1.4428 -0.0004 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 1.8616 2.0939 0.0007 27 1 3.4368 3.3942 0.0000 28 1 6.3523 3.8336 -0.4297 29 1 4.6815 4.8516 1.9806 30 1 6.4830 4.6234 1.8873 31 1 7.4429 6.8630 3.7404 32 1 5.3377 5.7720 -1.5354 33 1 3.8565 5.6790 -0.4849 34 1 5.2635 -2.2129 -0.0017 35 1 5.8689 -0.7953 -0.8918 36 1 5.8700 -0.7957 0.8882 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001030627888.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:11:38 Heat of formation + Delta-G solvation = 41.519022 kcal Electronic energy + Delta-G solvation = -19077.107211 eV Core-core repulsion = 16075.471656 eV Total energy + Delta-G solvation = -3001.635555 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.79580 -37.93340 -36.78550 -33.62347 -33.01073 -31.81204 -29.46418 -27.53344 -25.50675 -24.81211 -24.06099 -22.46386 -20.72218 -19.59023 -18.91680 -17.24541 -16.76726 -16.34825 -15.59023 -15.05112 -14.75655 -14.33373 -13.93899 -13.81519 -13.72555 -13.28113 -13.23539 -13.03901 -12.62645 -12.08422 -11.88948 -11.68375 -11.66411 -11.43069 -11.40776 -11.06086 -10.88207 -10.77715 -10.41096 -10.01271 -9.55926 -9.44953 -8.81089 -8.71825 -8.60087 -8.28277 -6.91492 -5.76922 -3.11024 0.75882 1.35762 1.76847 1.96179 3.39354 3.43943 3.47458 3.60099 3.65878 4.46125 4.50931 4.79616 4.95664 5.09095 5.15630 5.27561 5.28292 5.47762 5.49006 5.59249 5.63720 5.68340 5.86493 5.91017 6.04764 6.17045 6.22392 6.25592 6.42793 6.57731 6.79695 7.25010 7.38469 7.57358 7.93291 7.97115 8.59843 9.03090 9.69434 10.56181 11.39852 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.033957 B = 0.003478 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.369662 B = 8047.618899 C = 8450.296698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.205 4.205 3 C -0.109 4.109 4 C -0.166 4.166 5 C 0.574 3.426 6 O -0.540 6.540 7 N -0.709 5.709 8 C 0.093 3.907 9 C 0.154 3.846 10 N -0.607 5.607 11 C -0.225 4.225 12 H 0.082 0.918 13 C -0.006 4.006 14 N -0.918 5.918 15 Si 0.914 3.086 16 H -0.279 1.279 17 H -0.290 1.290 18 H -0.289 1.289 19 C 0.113 3.887 20 C -0.144 4.144 21 C -0.078 4.078 22 S 0.166 5.834 23 H 0.065 0.935 24 H 0.076 0.924 25 H 0.076 0.924 26 H 0.147 0.853 27 H 0.395 0.605 28 H 0.111 0.889 29 H 0.028 0.972 30 H 0.077 0.923 31 H 0.254 0.746 32 H 0.050 0.950 33 H 0.035 0.965 34 H 0.059 0.941 35 H 0.086 0.914 36 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.049 -16.894 -6.695 22.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.321 4.321 3 C -0.138 4.138 4 C -0.182 4.182 5 C 0.360 3.640 6 O -0.419 6.419 7 N -0.359 5.359 8 C -0.012 4.012 9 C 0.028 3.972 10 N -0.334 5.334 11 C -0.353 4.353 12 H 0.100 0.900 13 C -0.203 4.203 14 N -0.565 5.565 15 Si 0.744 3.256 16 H -0.204 1.204 17 H -0.217 1.217 18 H -0.216 1.216 19 C -0.014 4.014 20 C -0.264 4.264 21 C -0.136 4.136 22 S 0.432 5.568 23 H 0.085 0.915 24 H 0.095 0.905 25 H 0.095 0.905 26 H 0.165 0.835 27 H 0.229 0.771 28 H 0.129 0.871 29 H 0.046 0.954 30 H 0.095 0.905 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.052 0.948 34 H 0.078 0.922 35 H 0.105 0.895 36 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -12.330 -18.374 -6.515 23.067 hybrid contribution 0.136 2.713 0.361 2.740 sum -12.195 -15.660 -6.154 20.781 Atomic orbital electron populations 1.20316 0.87603 1.02777 1.03152 1.24220 1.00197 0.96022 1.11687 1.21116 0.91124 0.99422 1.02091 1.20252 0.93495 0.93168 1.11269 1.17555 0.87666 0.82277 0.76534 1.90767 1.18661 1.82029 1.50396 1.45995 1.10382 1.05421 1.74126 1.23899 0.91430 0.84845 1.01005 1.22714 1.00003 0.82985 0.91504 1.45727 1.61084 1.11877 1.14696 1.19033 1.27409 0.88366 1.00477 0.89994 1.24820 1.00985 0.98254 0.96267 1.69839 1.47008 1.32443 1.07176 0.86023 0.78871 0.82983 0.77717 1.20403 1.21712 1.21604 1.22869 0.95350 0.89667 0.93558 1.24454 1.01621 0.96696 1.03661 1.20399 0.89668 0.98573 1.04964 1.82915 0.93613 1.08754 1.71552 0.91550 0.90483 0.90548 0.83529 0.77098 0.87109 0.95390 0.90491 0.93582 0.93223 0.94772 0.92159 0.89516 0.89364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.54 10.35 36.01 0.37 -0.16 16 2 C -0.20 -2.00 6.44 -36.18 -0.23 -2.23 16 3 C -0.11 -1.22 9.75 -39.02 -0.38 -1.60 16 4 C -0.17 -2.32 5.98 -104.63 -0.63 -2.95 16 5 C 0.57 9.83 7.79 -12.62 -0.10 9.73 16 6 O -0.54 -10.91 14.26 5.25 0.07 -10.83 16 7 N -0.71 -11.63 5.35 -56.49 -0.30 -11.93 16 8 C 0.09 1.87 4.40 -70.13 -0.31 1.56 16 9 C 0.15 3.78 7.33 -2.84 -0.02 3.76 16 10 N -0.61 -15.82 3.70 -177.85 -0.66 -16.48 16 11 C -0.23 -6.40 10.70 -15.06 -0.16 -6.56 16 12 H 0.08 2.23 7.83 -52.49 -0.41 1.82 16 13 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 14 N -0.92 -27.79 11.39 55.49 0.63 -27.16 16 15 Si 0.91 22.34 29.55 -169.99 -5.02 17.32 16 16 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 17 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 18 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 19 C 0.11 2.29 8.69 -2.96 -0.03 2.26 16 20 C -0.14 -1.83 6.34 -35.11 -0.22 -2.05 16 21 C -0.08 -0.93 8.77 36.00 0.32 -0.62 16 22 S 0.17 1.61 22.92 -107.50 -2.46 -0.85 16 23 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.15 1.38 7.10 -52.49 -0.37 1.01 16 27 H 0.39 5.34 7.26 -40.82 -0.30 5.04 16 28 H 0.11 2.40 7.51 -51.93 -0.39 2.01 16 29 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.08 2.14 7.17 -51.93 -0.37 1.77 16 31 H 0.25 7.42 8.31 -40.82 -0.34 7.09 16 32 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.03 0.64 8.11 -51.93 -0.42 0.22 16 34 H 0.06 0.55 8.11 -51.93 -0.42 0.13 16 35 H 0.09 1.12 7.78 -51.93 -0.40 0.71 16 36 H 0.09 1.18 7.78 -51.92 -0.40 0.78 16 LS Contribution 318.20 15.07 4.80 4.80 Total: -1.00 -33.31 318.20 -9.17 -42.49 By element: Atomic # 1 Polarization: 6.55 SS G_CDS: -4.74 Total: 1.81 kcal Atomic # 6 Polarization: 2.33 SS G_CDS: -1.48 Total: 0.84 kcal Atomic # 7 Polarization: -55.24 SS G_CDS: -0.33 Total: -55.56 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.07 Total: -10.83 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Atomic # 16 Polarization: 1.61 SS G_CDS: -2.46 Total: -0.85 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -33.31 -9.17 -42.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030627888.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.004 kcal (2) G-P(sol) polarization free energy of solvation -33.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds