Wall clock time and date at job start Tue Mar 31 2020 01:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32763 * 124.71477 * 2 1 4 4 C 1.44427 * 113.08603 * 180.02562 * 3 2 1 5 5 C 1.47193 * 123.46113 * 180.02562 * 4 3 2 6 6 O 1.21634 * 119.99493 * 179.97438 * 5 4 3 7 7 N 1.34774 * 120.00138 * 359.97438 * 5 4 3 8 8 C 1.46493 * 119.99924 * 180.02562 * 7 5 4 9 9 C 1.53948 * 113.74130 * 253.73797 * 8 7 5 10 10 N 1.47813 * 86.03874 * 222.08604 * 9 8 7 11 11 C 1.36935 * 134.45858 * 204.64677 * 10 9 8 12 12 H 1.07994 * 120.00165 * 179.86563 * 11 10 9 13 13 C 1.38811 * 119.99888 * 359.86406 * 11 10 9 14 14 N 1.31617 * 120.00240 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99961 * 180.02562 * 13 11 10 16 16 H 1.48497 * 109.47524 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47438 * 119.99732 * 15 13 11 18 18 H 1.48510 * 109.46947 * 239.99617 * 15 13 11 19 19 C 1.47581 * 91.05071 * 24.54883 * 10 9 8 20 20 C 1.36010 * 113.07821 * 359.97438 * 4 3 2 21 21 C 1.50694 * 124.59313 * 179.97438 * 20 4 3 22 22 S 1.70447 * 110.81546 * 0.02562 * 20 4 3 23 23 H 1.09002 * 109.47120 * 179.97438 * 1 2 3 24 24 H 1.08997 * 109.46738 * 299.99782 * 1 2 3 25 25 H 1.08998 * 109.47156 * 59.99343 * 1 2 3 26 26 H 1.07999 * 123.46129 * 0.04563 * 3 2 1 27 27 H 0.97001 * 119.99541 * 359.97438 * 7 5 4 28 28 H 1.09000 * 112.95049 * 25.32738 * 8 7 5 29 29 H 1.09003 * 113.76870 * 336.34926 * 9 8 7 30 30 H 1.08998 * 113.76938 * 107.74501 * 9 8 7 31 31 H 0.96993 * 120.00683 * 180.02562 * 14 13 11 32 32 H 1.08999 * 113.76869 * 221.15711 * 19 10 9 33 33 H 1.08998 * 113.77055 * 89.75533 * 19 10 9 34 34 H 1.08999 * 109.46984 * 180.02562 * 21 20 4 35 35 H 1.09000 * 109.47495 * 300.03360 * 21 20 4 36 36 H 1.09007 * 109.46884 * 60.03385 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2631 1.0913 0.0000 4 6 3.6777 0.8002 -0.0006 5 6 4.7201 1.8394 -0.0002 6 8 5.8945 1.5226 -0.0002 7 7 4.3734 3.1417 0.0003 8 6 5.4109 4.1759 0.0002 9 6 5.5718 4.8926 1.3531 10 7 5.6876 6.1371 0.5639 11 6 6.2645 7.3599 0.7805 12 1 6.2099 8.1250 0.0203 13 6 6.9195 7.6162 1.9773 14 7 6.9856 6.6839 2.9040 15 14 7.7058 9.2846 2.2731 16 1 7.4923 10.1501 1.0855 17 1 7.0883 9.9185 3.4656 18 1 9.1627 9.1113 2.5032 19 6 4.9344 5.5319 -0.5516 20 6 3.9477 -0.5328 -0.0005 21 6 5.3333 -1.1251 -0.0016 22 16 2.5064 -1.4428 -0.0004 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 1.8616 2.0939 0.0007 27 1 3.4368 3.3942 0.0000 28 1 6.3523 3.8336 -0.4297 29 1 4.6815 4.8516 1.9806 30 1 6.4830 4.6234 1.8873 31 1 7.4429 6.8630 3.7404 32 1 5.3377 5.7720 -1.5354 33 1 3.8565 5.6790 -0.4849 34 1 5.2635 -2.2129 -0.0017 35 1 5.8689 -0.7953 -0.8918 36 1 5.8700 -0.7957 0.8882 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001030627888.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:11:37 Heat of formation + Delta-G solvation = 19.502204 kcal Electronic energy + Delta-G solvation = -19078.061932 eV Core-core repulsion = 16075.471656 eV Total energy + Delta-G solvation = -3002.590276 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.16802 -39.49698 -37.95501 -35.21732 -33.95015 -33.73059 -30.40435 -29.37845 -26.67291 -26.58433 -25.32982 -24.01093 -21.84887 -21.28249 -20.07813 -18.79766 -18.21403 -17.55346 -16.99820 -16.96574 -16.11303 -15.73206 -15.49422 -14.90533 -14.76187 -14.51384 -14.11944 -14.09510 -13.82279 -13.66478 -13.32774 -13.23197 -12.85557 -12.82930 -12.67384 -12.52448 -12.48612 -12.27871 -11.91453 -11.84037 -11.54677 -10.92411 -10.84610 -10.01888 -9.52819 -9.32176 -8.99444 -7.93234 -5.29150 -0.19317 0.52937 0.91688 0.99587 1.45069 1.47087 1.57459 2.22832 2.35617 2.51092 3.24156 3.38712 3.68268 3.82933 3.83949 4.12999 4.25080 4.33021 4.49963 4.56973 4.66173 4.66688 4.72125 4.84138 4.87813 4.93541 5.07691 5.13624 5.20076 5.20677 5.24064 5.43560 5.46100 5.68845 5.87217 6.61299 6.86400 7.27093 7.56459 8.49329 9.23844 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.033957 B = 0.003478 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 824.369662 B = 8047.618899 C = 8450.296698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.200 4.200 3 C -0.123 4.123 4 C -0.189 4.189 5 C 0.570 3.430 6 O -0.580 6.580 7 N -0.698 5.698 8 C 0.121 3.879 9 C 0.153 3.847 10 N -0.638 5.638 11 C -0.235 4.235 12 H 0.092 0.908 13 C -0.070 4.070 14 N -0.956 5.956 15 Si 0.984 3.016 16 H -0.260 1.260 17 H -0.291 1.291 18 H -0.294 1.294 19 C 0.123 3.877 20 C -0.167 4.167 21 C -0.076 4.076 22 S 0.226 5.774 23 H 0.080 0.920 24 H 0.086 0.914 25 H 0.089 0.911 26 H 0.163 0.837 27 H 0.412 0.588 28 H 0.092 0.908 29 H 0.025 0.975 30 H 0.032 0.968 31 H 0.248 0.752 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.089 0.911 35 H 0.072 0.928 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.644 -17.440 -7.935 24.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.317 4.317 3 C -0.151 4.151 4 C -0.206 4.206 5 C 0.358 3.642 6 O -0.462 6.462 7 N -0.349 5.349 8 C 0.015 3.985 9 C 0.026 3.974 10 N -0.365 5.365 11 C -0.363 4.363 12 H 0.110 0.890 13 C -0.262 4.262 14 N -0.605 5.605 15 Si 0.812 3.188 16 H -0.184 1.184 17 H -0.218 1.218 18 H -0.221 1.221 19 C -0.002 4.002 20 C -0.287 4.287 21 C -0.134 4.134 22 S 0.493 5.507 23 H 0.099 0.901 24 H 0.105 0.895 25 H 0.108 0.892 26 H 0.181 0.819 27 H 0.249 0.751 28 H 0.110 0.890 29 H 0.043 0.957 30 H 0.051 0.949 31 H 0.057 0.943 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.108 0.892 35 H 0.090 0.910 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.990 -18.932 -7.799 25.376 hybrid contribution 0.860 2.733 0.712 2.952 sum -14.130 -16.198 -7.087 22.634 Atomic orbital electron populations 1.20463 0.85121 1.04124 1.04249 1.24702 1.01843 0.95610 1.09546 1.21197 0.89706 1.00893 1.03317 1.20143 0.93991 0.92649 1.13814 1.18104 0.87965 0.82790 0.75319 1.90745 1.20635 1.82619 1.52166 1.45717 1.10448 1.04693 1.74026 1.23177 0.91855 0.85882 0.97616 1.22584 0.97724 0.84004 0.93103 1.46050 1.62147 1.11620 1.16697 1.19495 1.26828 0.89428 1.00593 0.89036 1.25736 1.02180 1.02020 0.96307 1.70052 1.48392 1.34549 1.07491 0.84930 0.77211 0.78768 0.77907 1.18426 1.21804 1.22072 1.23007 0.96433 0.88146 0.92625 1.24741 1.03332 0.97164 1.03469 1.20346 0.89483 1.00343 1.03261 1.82695 0.91039 1.07472 1.69510 0.90109 0.89539 0.89196 0.81939 0.75059 0.89005 0.95748 0.94941 0.94274 0.91589 0.91564 0.89241 0.90972 0.91477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.77 10.35 71.24 0.74 -0.03 16 2 C -0.20 -3.28 6.44 24.51 0.16 -3.13 16 3 C -0.12 -2.51 9.75 22.67 0.22 -2.29 16 4 C -0.19 -5.17 5.98 -19.87 -0.12 -5.29 16 5 C 0.57 19.83 7.79 86.60 0.67 20.50 16 6 O -0.58 -24.54 14.26 -4.14 -0.06 -24.60 16 7 N -0.70 -22.67 5.35 -450.86 -2.41 -25.08 16 8 C 0.12 4.91 4.40 46.75 0.21 5.12 16 9 C 0.15 7.74 7.33 86.44 0.63 8.37 16 10 N -0.64 -33.48 3.70 -716.61 -2.65 -36.14 16 11 C -0.24 -13.41 10.70 84.03 0.90 -12.51 16 12 H 0.09 4.89 7.83 -2.91 -0.02 4.87 16 13 C -0.07 -4.06 5.50 84.86 0.47 -3.60 16 14 N -0.96 -59.93 11.39 21.65 0.25 -59.68 16 15 Si 0.98 46.50 29.55 68.60 2.03 48.52 16 16 H -0.26 -11.36 7.11 99.48 0.71 -10.65 16 17 H -0.29 -13.67 7.11 99.48 0.71 -12.97 16 18 H -0.29 -13.95 7.11 99.48 0.71 -13.25 16 19 C 0.12 4.84 8.69 86.49 0.75 5.59 16 20 C -0.17 -4.09 6.34 25.17 0.16 -3.93 16 21 C -0.08 -1.85 8.77 71.23 0.62 -1.22 16 22 S 0.23 3.76 22.92 -56.49 -1.29 2.47 16 23 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 24 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 25 H 0.09 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.16 2.63 7.10 -2.91 -0.02 2.61 16 27 H 0.41 10.50 7.26 -92.71 -0.67 9.82 16 28 H 0.09 4.12 7.51 -2.39 -0.02 4.10 16 29 H 0.02 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.03 1.91 7.17 -2.39 -0.02 1.89 16 31 H 0.25 15.08 8.31 -92.71 -0.77 14.31 16 32 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 33 H 0.07 2.25 8.11 -2.39 -0.02 2.23 16 34 H 0.09 1.55 8.11 -2.39 -0.02 1.53 16 35 H 0.07 1.94 7.78 -2.39 -0.02 1.92 16 36 H 0.07 1.90 7.78 -2.38 -0.02 1.88 16 Total: -1.00 -74.80 318.20 1.69 -73.11 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: 0.43 Total: 13.81 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: 5.41 Total: 7.58 kcal Atomic # 7 Polarization: -116.08 SS G_CDS: -4.82 Total: -120.90 kcal Atomic # 8 Polarization: -24.54 SS G_CDS: -0.06 Total: -24.60 kcal Atomic # 14 Polarization: 46.50 SS G_CDS: 2.03 Total: 48.52 kcal Atomic # 16 Polarization: 3.76 SS G_CDS: -1.29 Total: 2.47 kcal Total: -74.80 1.69 -73.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001030627888.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.614 kcal (2) G-P(sol) polarization free energy of solvation -74.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.810 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.112 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds