Wall clock time and date at job start Tue Mar 31 2020 01:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37472 * 122.44794 * 2 1 4 4 C 1.36647 * 113.29678 * 179.97438 * 3 2 1 5 5 C 1.46580 * 125.45996 * 179.97438 * 4 3 2 6 6 O 1.21700 * 119.99990 * 359.97438 * 5 4 3 7 7 N 1.34779 * 120.00083 * 180.02562 * 5 4 3 8 8 C 1.46504 * 119.99989 * 179.97438 * 7 5 4 9 9 C 1.53942 * 113.74173 * 253.73896 * 8 7 5 10 10 N 1.47818 * 86.03603 * 222.08401 * 9 8 7 11 11 C 1.36936 * 134.45644 * 204.64704 * 10 9 8 12 12 H 1.07990 * 119.99649 * 179.86721 * 11 10 9 13 13 C 1.38814 * 119.99947 * 359.85933 * 11 10 9 14 14 N 1.31615 * 119.99869 * 0.02562 * 13 11 10 15 15 Si 1.86792 * 119.99939 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47279 * 90.00386 * 15 13 11 17 17 H 1.48498 * 109.47145 * 210.00530 * 15 13 11 18 18 H 1.48502 * 109.47032 * 330.00223 * 15 13 11 19 19 C 1.47582 * 91.04925 * 24.54900 * 10 9 8 20 20 S 1.75836 * 109.08357 * 0.02562 * 4 3 2 21 21 C 1.33809 * 122.44866 * 179.70972 * 2 1 3 22 22 C 1.50698 * 124.52664 * 0.02562 * 21 2 1 23 23 H 1.09002 * 109.47152 * 90.02418 * 1 2 3 24 24 H 1.09001 * 109.46980 * 330.02518 * 1 2 3 25 25 H 1.09004 * 109.47113 * 210.02499 * 1 2 3 26 26 H 1.07996 * 123.35444 * 0.02562 * 3 2 1 27 27 H 0.96992 * 119.99858 * 359.97438 * 7 5 4 28 28 H 1.09000 * 112.94053 * 25.33344 * 8 7 5 29 29 H 1.08997 * 113.76977 * 336.34559 * 9 8 7 30 30 H 1.09002 * 113.76819 * 107.74666 * 9 8 7 31 31 H 0.97004 * 119.99780 * 179.97438 * 14 13 11 32 32 H 1.08998 * 113.77020 * 221.15391 * 19 10 9 33 33 H 1.08997 * 113.77335 * 89.75564 * 19 10 9 34 34 H 1.09000 * 109.47405 * 89.98978 * 22 21 2 35 35 H 1.08995 * 109.47360 * 209.99804 * 22 21 2 36 36 H 1.09008 * 109.46840 * 329.99603 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2446 1.1601 0.0000 4 6 3.5937 0.9428 0.0006 5 6 4.6231 1.9863 0.0002 6 8 4.3002 3.1596 -0.0012 7 7 5.9273 1.6463 0.0003 8 6 6.9562 2.6893 -0.0007 9 6 7.6722 2.8523 -1.3537 10 7 8.9159 2.9755 -0.5644 11 6 10.1358 3.5586 -0.7815 12 1 10.9010 3.5088 -0.0211 13 6 10.3888 4.2134 -1.9791 14 7 9.4560 4.2743 -2.9056 15 14 12.0530 5.0081 -2.2755 16 1 12.9664 4.0229 -2.9083 17 1 11.8893 6.1793 -3.1737 18 1 12.6264 5.4540 -0.9803 19 6 8.3144 2.2205 0.5519 20 16 3.8970 -0.7892 0.0003 21 6 2.2250 -1.1292 0.0057 22 6 1.6356 -2.5161 0.0122 23 1 -0.3633 -0.0004 -1.0277 24 1 -0.3633 0.8902 0.5134 25 1 -0.3633 -0.8898 0.5142 26 1 1.8020 2.1452 0.0004 27 1 6.1847 0.7111 0.0010 28 1 6.6087 3.6292 0.4281 29 1 7.6360 1.9611 -1.9801 30 1 7.3982 3.7615 -1.8889 31 1 9.6327 4.7322 -3.7423 32 1 8.5522 2.6261 1.5353 33 1 8.4672 1.1433 0.4865 34 1 1.4936 -2.8554 -1.0139 35 1 2.3123 -3.1961 0.5295 36 1 0.6741 -2.4999 0.5257 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031362042.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:18:06 Heat of formation + Delta-G solvation = 44.143375 kcal Electronic energy + Delta-G solvation = -18821.089025 eV Core-core repulsion = 15819.567271 eV Total energy + Delta-G solvation = -3001.521754 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.68286 -38.54862 -37.35719 -33.56051 -32.43299 -31.73472 -29.83402 -27.68732 -26.07818 -24.84026 -23.97210 -22.56526 -20.52088 -19.73330 -18.57592 -17.89604 -16.79325 -16.19290 -15.72831 -15.09595 -14.84052 -14.56576 -14.25470 -13.90145 -13.81407 -13.30646 -13.14834 -12.78286 -12.66374 -12.05911 -12.02463 -11.88019 -11.76563 -11.45922 -11.44133 -10.98243 -10.89347 -10.78007 -10.45582 -10.06427 -9.73441 -9.54310 -8.81488 -8.77532 -8.56866 -8.39877 -6.92986 -5.77547 -3.11839 0.45126 1.36273 1.77759 2.27216 3.36622 3.39867 3.42042 3.46336 3.47526 4.45219 4.54826 4.79948 4.89598 5.04477 5.13274 5.17574 5.21515 5.39013 5.45531 5.47314 5.55663 5.57369 5.73568 5.82957 6.00347 6.16305 6.21384 6.31898 6.38668 6.54221 6.70736 7.22845 7.33901 7.54757 7.79856 7.95660 8.44417 9.02166 9.68586 10.54769 11.39150 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.042626 B = 0.003293 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.711221 B = 8500.076730 C = 8723.942600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.123 4.123 3 C -0.055 4.055 4 C -0.254 4.254 5 C 0.586 3.414 6 O -0.531 6.531 7 N -0.710 5.710 8 C 0.092 3.908 9 C 0.154 3.846 10 N -0.606 5.606 11 C -0.226 4.226 12 H 0.082 0.918 13 C -0.006 4.006 14 N -0.918 5.918 15 Si 0.915 3.085 16 H -0.288 1.288 17 H -0.289 1.289 18 H -0.280 1.280 19 C 0.113 3.887 20 S 0.195 5.805 21 C -0.206 4.206 22 C -0.083 4.083 23 H 0.069 0.931 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.152 0.848 27 H 0.393 0.607 28 H 0.113 0.887 29 H 0.029 0.971 30 H 0.078 0.922 31 H 0.255 0.745 32 H 0.051 0.949 33 H 0.036 0.964 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.167 -14.272 6.649 23.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.136 4.136 3 C -0.088 4.088 4 C -0.374 4.374 5 C 0.371 3.629 6 O -0.409 6.409 7 N -0.360 5.360 8 C -0.013 4.013 9 C 0.028 3.972 10 N -0.333 5.333 11 C -0.354 4.354 12 H 0.100 0.900 13 C -0.203 4.203 14 N -0.564 5.564 15 Si 0.745 3.255 16 H -0.216 1.216 17 H -0.216 1.216 18 H -0.205 1.205 19 C -0.014 4.014 20 S 0.464 5.536 21 C -0.326 4.326 22 C -0.142 4.142 23 H 0.088 0.912 24 H 0.086 0.914 25 H 0.085 0.915 26 H 0.170 0.830 27 H 0.227 0.773 28 H 0.131 0.869 29 H 0.047 0.953 30 H 0.097 0.903 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.053 0.947 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -15.772 -14.120 6.463 22.134 hybrid contribution -0.208 0.695 -0.362 0.810 sum -15.979 -13.426 6.101 21.744 Atomic orbital electron populations 1.20510 0.89597 1.02692 1.02305 1.18655 0.97748 0.91275 1.05910 1.20613 0.91052 0.99815 0.97315 1.24693 0.98203 0.96882 1.17667 1.16972 0.81912 0.87291 0.76724 1.90827 1.81628 1.18131 1.50352 1.46049 1.05387 1.10385 1.74191 1.23986 0.84832 0.91155 1.01288 1.22725 0.83009 1.00097 0.91408 1.45712 1.12137 1.60888 1.14562 1.18983 0.88542 1.27388 1.00462 0.90002 1.24827 0.98287 1.00944 0.96261 1.69831 1.32482 1.46950 1.07170 0.86081 0.82977 0.78683 0.77762 1.21573 1.21554 1.20531 1.22872 0.89467 0.95426 0.93657 1.82981 1.03230 0.98672 1.68717 1.23981 0.98530 1.00213 1.09862 1.20378 1.00998 0.89879 1.02920 0.91218 0.91390 0.91535 0.83020 0.77310 0.86881 0.95293 0.90344 0.93505 0.93065 0.94697 0.90526 0.91233 0.90327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.69 9.85 36.01 0.35 -0.33 16 2 C -0.12 -1.28 5.78 -106.45 -0.62 -1.90 16 3 C -0.06 -0.70 9.80 -40.44 -0.40 -1.10 16 4 C -0.25 -3.57 6.45 -36.79 -0.24 -3.81 16 5 C 0.59 10.22 7.78 -12.90 -0.10 10.12 16 6 O -0.53 -11.19 16.46 5.19 0.09 -11.10 16 7 N -0.71 -11.89 5.37 -56.68 -0.30 -12.19 16 8 C 0.09 1.85 4.40 -70.14 -0.31 1.55 16 9 C 0.15 3.77 7.33 -2.84 -0.02 3.75 16 10 N -0.61 -15.79 3.70 -177.88 -0.66 -16.45 16 11 C -0.23 -6.42 10.70 -15.06 -0.16 -6.58 16 12 H 0.08 2.21 7.83 -52.49 -0.41 1.80 16 13 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 14 N -0.92 -27.73 11.39 55.49 0.63 -27.10 16 15 Si 0.91 22.32 29.55 -169.99 -5.02 17.30 16 16 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 17 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 C 0.11 2.29 8.69 -2.97 -0.03 2.27 16 20 S 0.20 2.09 22.10 -107.50 -2.38 -0.29 16 21 C -0.21 -2.00 6.28 -35.86 -0.23 -2.23 16 22 C -0.08 -0.54 9.98 36.00 0.36 -0.18 16 23 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 24 H 0.07 0.47 8.13 -51.93 -0.42 0.05 16 25 H 0.07 0.40 6.53 -51.93 -0.34 0.06 16 26 H 0.15 1.90 8.06 -52.49 -0.42 1.48 16 27 H 0.39 5.55 7.83 -40.82 -0.32 5.23 16 28 H 0.11 2.45 7.50 -51.93 -0.39 2.06 16 29 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.08 2.17 7.16 -51.93 -0.37 1.80 16 31 H 0.25 7.45 8.31 -40.82 -0.34 7.11 16 32 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 33 H 0.04 0.65 8.11 -51.93 -0.42 0.23 16 34 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.08 0.41 6.57 -51.92 -0.34 0.07 16 LS Contribution 319.16 15.07 4.81 4.81 Total: -1.00 -33.46 319.16 -8.99 -42.45 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -4.69 Total: 1.27 kcal Atomic # 6 Polarization: 2.76 SS G_CDS: -1.47 Total: 1.29 kcal Atomic # 7 Polarization: -55.40 SS G_CDS: -0.33 Total: -55.74 kcal Atomic # 8 Polarization: -11.19 SS G_CDS: 0.09 Total: -11.10 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Atomic # 16 Polarization: 2.09 SS G_CDS: -2.38 Total: -0.29 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -33.46 -8.99 -42.45 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031362042.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.598 kcal (2) G-P(sol) polarization free energy of solvation -33.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.454 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds