Wall clock time and date at job start Tue Mar 31 2020 01:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37472 * 122.44794 * 2 1 4 4 C 1.36647 * 113.29678 * 179.97438 * 3 2 1 5 5 C 1.46580 * 125.45996 * 179.97438 * 4 3 2 6 6 O 1.21700 * 119.99990 * 359.97438 * 5 4 3 7 7 N 1.34779 * 120.00083 * 180.02562 * 5 4 3 8 8 C 1.46504 * 119.99989 * 179.97438 * 7 5 4 9 9 C 1.53942 * 113.74173 * 253.73896 * 8 7 5 10 10 N 1.47818 * 86.03603 * 222.08401 * 9 8 7 11 11 C 1.36936 * 134.45644 * 204.64704 * 10 9 8 12 12 H 1.07990 * 119.99649 * 179.86721 * 11 10 9 13 13 C 1.38814 * 119.99947 * 359.85933 * 11 10 9 14 14 N 1.31615 * 119.99869 * 0.02562 * 13 11 10 15 15 Si 1.86792 * 119.99939 * 180.02562 * 13 11 10 16 16 H 1.48500 * 109.47279 * 90.00386 * 15 13 11 17 17 H 1.48498 * 109.47145 * 210.00530 * 15 13 11 18 18 H 1.48502 * 109.47032 * 330.00223 * 15 13 11 19 19 C 1.47582 * 91.04925 * 24.54900 * 10 9 8 20 20 S 1.75836 * 109.08357 * 0.02562 * 4 3 2 21 21 C 1.33809 * 122.44866 * 179.70972 * 2 1 3 22 22 C 1.50698 * 124.52664 * 0.02562 * 21 2 1 23 23 H 1.09002 * 109.47152 * 90.02418 * 1 2 3 24 24 H 1.09001 * 109.46980 * 330.02518 * 1 2 3 25 25 H 1.09004 * 109.47113 * 210.02499 * 1 2 3 26 26 H 1.07996 * 123.35444 * 0.02562 * 3 2 1 27 27 H 0.96992 * 119.99858 * 359.97438 * 7 5 4 28 28 H 1.09000 * 112.94053 * 25.33344 * 8 7 5 29 29 H 1.08997 * 113.76977 * 336.34559 * 9 8 7 30 30 H 1.09002 * 113.76819 * 107.74666 * 9 8 7 31 31 H 0.97004 * 119.99780 * 179.97438 * 14 13 11 32 32 H 1.08998 * 113.77020 * 221.15391 * 19 10 9 33 33 H 1.08997 * 113.77335 * 89.75564 * 19 10 9 34 34 H 1.09000 * 109.47405 * 89.98978 * 22 21 2 35 35 H 1.08995 * 109.47360 * 209.99804 * 22 21 2 36 36 H 1.09008 * 109.46840 * 329.99603 * 22 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2446 1.1601 0.0000 4 6 3.5937 0.9428 0.0006 5 6 4.6231 1.9863 0.0002 6 8 4.3002 3.1596 -0.0012 7 7 5.9273 1.6463 0.0003 8 6 6.9562 2.6893 -0.0007 9 6 7.6722 2.8523 -1.3537 10 7 8.9159 2.9755 -0.5644 11 6 10.1358 3.5586 -0.7815 12 1 10.9010 3.5088 -0.0211 13 6 10.3888 4.2134 -1.9791 14 7 9.4560 4.2743 -2.9056 15 14 12.0530 5.0081 -2.2755 16 1 12.9664 4.0229 -2.9083 17 1 11.8893 6.1793 -3.1737 18 1 12.6264 5.4540 -0.9803 19 6 8.3144 2.2205 0.5519 20 16 3.8970 -0.7892 0.0003 21 6 2.2250 -1.1292 0.0057 22 6 1.6356 -2.5161 0.0122 23 1 -0.3633 -0.0004 -1.0277 24 1 -0.3633 0.8902 0.5134 25 1 -0.3633 -0.8898 0.5142 26 1 1.8020 2.1452 0.0004 27 1 6.1847 0.7111 0.0010 28 1 6.6087 3.6292 0.4281 29 1 7.6360 1.9611 -1.9801 30 1 7.3982 3.7615 -1.8889 31 1 9.6327 4.7322 -3.7423 32 1 8.5522 2.6261 1.5353 33 1 8.4672 1.1433 0.4865 34 1 1.4936 -2.8554 -1.0139 35 1 2.3123 -3.1961 0.5295 36 1 0.6741 -2.4999 0.5257 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031362042.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:18:06 Heat of formation + Delta-G solvation = 21.785928 kcal Electronic energy + Delta-G solvation = -18822.058517 eV Core-core repulsion = 15819.567271 eV Total energy + Delta-G solvation = -3002.491246 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.11111 -39.69395 -38.87259 -35.23903 -33.90291 -33.08849 -30.51555 -29.54992 -27.14291 -26.67085 -25.26054 -24.03387 -21.79765 -21.43099 -19.58477 -19.02297 -18.77756 -17.46862 -17.03528 -16.94074 -16.15837 -15.80692 -15.73140 -15.24263 -14.81663 -14.61978 -14.13316 -13.79681 -13.64426 -13.40210 -13.31182 -13.26612 -12.86300 -12.80516 -12.71366 -12.59980 -12.47550 -12.32591 -11.97348 -11.79503 -11.57001 -11.19627 -10.90906 -10.14559 -9.60495 -9.32152 -9.00846 -7.93547 -5.29712 -0.51630 0.46534 0.90450 1.33042 1.45013 1.48050 1.56853 2.01579 2.12762 2.48146 3.21717 3.36504 3.74094 3.78699 3.88097 4.17348 4.27571 4.27910 4.44930 4.60369 4.69401 4.69800 4.73088 4.85400 4.89665 4.93756 5.05433 5.10653 5.12357 5.19231 5.42478 5.44697 5.55822 5.60635 5.85837 6.42331 6.85496 7.08427 7.55787 8.48033 9.23314 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.042626 B = 0.003293 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.711221 B = 8500.076730 C = 8723.942600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C -0.139 4.139 3 C -0.052 4.052 4 C -0.299 4.299 5 C 0.586 3.414 6 O -0.579 6.579 7 N -0.700 5.700 8 C 0.118 3.882 9 C 0.152 3.848 10 N -0.637 5.637 11 C -0.236 4.236 12 H 0.093 0.907 13 C -0.070 4.070 14 N -0.956 5.956 15 Si 0.985 3.015 16 H -0.283 1.283 17 H -0.296 1.296 18 H -0.265 1.265 19 C 0.123 3.877 20 S 0.229 5.771 21 C -0.190 4.190 22 C -0.087 4.087 23 H 0.076 0.924 24 H 0.068 0.932 25 H 0.087 0.913 26 H 0.143 0.857 27 H 0.409 0.591 28 H 0.096 0.904 29 H 0.026 0.974 30 H 0.035 0.965 31 H 0.249 0.751 32 H 0.069 0.931 33 H 0.067 0.933 34 H 0.090 0.910 35 H 0.082 0.918 36 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.797 -16.957 7.870 25.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.151 4.151 3 C -0.086 4.086 4 C -0.419 4.419 5 C 0.374 3.626 6 O -0.460 6.460 7 N -0.351 5.351 8 C 0.012 3.988 9 C 0.025 3.975 10 N -0.364 5.364 11 C -0.364 4.364 12 H 0.110 0.890 13 C -0.263 4.263 14 N -0.604 5.604 15 Si 0.813 3.187 16 H -0.210 1.210 17 H -0.223 1.223 18 H -0.189 1.189 19 C -0.002 4.002 20 S 0.498 5.502 21 C -0.310 4.310 22 C -0.145 4.145 23 H 0.095 0.905 24 H 0.087 0.913 25 H 0.106 0.894 26 H 0.161 0.839 27 H 0.245 0.755 28 H 0.114 0.886 29 H 0.044 0.956 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.108 0.892 35 H 0.100 0.900 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -16.403 -16.869 7.727 24.766 hybrid contribution -0.137 1.402 -0.707 1.576 sum -16.541 -15.467 7.021 23.709 Atomic orbital electron populations 1.20579 0.87380 1.03841 1.03125 1.18874 0.99335 0.90442 1.06435 1.20811 0.90999 1.00625 0.96177 1.24364 0.97621 0.98308 1.21616 1.17429 0.82363 0.87526 0.75280 1.90792 1.82332 1.20403 1.52512 1.45763 1.04759 1.10400 1.74129 1.23293 0.85831 0.91596 0.98031 1.22597 0.84021 0.97904 0.92980 1.46028 1.11889 1.61947 1.16534 1.19453 0.89577 1.26811 1.00605 0.88971 1.25754 1.02054 1.02164 0.96306 1.70048 1.34573 1.48318 1.07460 0.84979 0.78562 0.77283 0.77888 1.21003 1.22293 1.18909 1.23014 0.87904 0.96478 0.92811 1.82783 1.04099 0.95338 1.67949 1.24530 0.97917 1.01729 1.06865 1.20582 1.01977 0.87720 1.04231 0.90503 0.91270 0.89447 0.83912 0.75468 0.88623 0.95621 0.94674 0.94242 0.91280 0.91577 0.89159 0.89962 0.88453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.11 9.85 71.24 0.70 -0.41 16 2 C -0.14 -2.61 5.78 -21.05 -0.12 -2.73 16 3 C -0.05 -1.31 9.80 21.72 0.21 -1.09 16 4 C -0.30 -8.35 6.45 24.08 0.16 -8.19 16 5 C 0.59 20.93 7.78 86.42 0.67 21.61 16 6 O -0.58 -25.60 16.46 -4.35 -0.07 -25.67 16 7 N -0.70 -23.41 5.37 -451.46 -2.42 -25.84 16 8 C 0.12 4.85 4.40 46.75 0.21 5.06 16 9 C 0.15 7.72 7.33 86.44 0.63 8.35 16 10 N -0.64 -33.44 3.70 -716.69 -2.65 -36.09 16 11 C -0.24 -13.45 10.70 84.03 0.90 -12.55 16 12 H 0.09 4.91 7.83 -2.92 -0.02 4.88 16 13 C -0.07 -4.08 5.50 84.86 0.47 -3.61 16 14 N -0.96 -59.78 11.39 21.65 0.25 -59.53 16 15 Si 0.99 46.45 29.55 68.60 2.03 48.48 16 16 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 17 H -0.30 -14.16 7.11 99.48 0.71 -13.45 16 18 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 19 C 0.12 4.86 8.69 86.49 0.75 5.61 16 20 S 0.23 4.42 22.10 -56.49 -1.25 3.17 16 21 C -0.19 -3.12 6.28 24.68 0.15 -2.97 16 22 C -0.09 -0.76 9.98 71.24 0.71 -0.05 16 23 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 24 H 0.07 0.83 8.13 -2.39 -0.02 0.81 16 25 H 0.09 0.70 6.53 -2.38 -0.02 0.68 16 26 H 0.14 3.73 8.06 -2.91 -0.02 3.70 16 27 H 0.41 11.05 7.83 -92.71 -0.73 10.32 16 28 H 0.10 4.30 7.50 -2.39 -0.02 4.28 16 29 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.03 2.07 7.16 -2.39 -0.02 2.05 16 31 H 0.25 15.11 8.31 -92.71 -0.77 14.34 16 32 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 33 H 0.07 2.26 8.11 -2.39 -0.02 2.24 16 34 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 36 H 0.10 0.56 6.57 -2.38 -0.02 0.54 16 Total: -1.00 -75.22 319.16 1.69 -73.52 By element: Atomic # 1 Polarization: 12.57 SS G_CDS: 0.38 Total: 12.94 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: 5.44 Total: 9.02 kcal Atomic # 7 Polarization: -116.63 SS G_CDS: -4.83 Total: -121.46 kcal Atomic # 8 Polarization: -25.60 SS G_CDS: -0.07 Total: -25.67 kcal Atomic # 14 Polarization: 46.45 SS G_CDS: 2.03 Total: 48.48 kcal Atomic # 16 Polarization: 4.42 SS G_CDS: -1.25 Total: 3.17 kcal Total: -75.22 1.69 -73.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031362042.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.307 kcal (2) G-P(sol) polarization free energy of solvation -75.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds