Wall clock time and date at job start Tue Mar 31 2020 01:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50696 * 109.47126 * 2 1 4 4 C 1.37474 * 123.35409 * 264.97663 * 3 2 1 5 5 C 1.33818 * 115.09922 * 179.97438 * 4 3 2 6 6 S 1.70615 * 110.95549 * 0.02562 * 5 4 3 7 7 C 1.36646 * 123.34988 * 84.98057 * 3 2 1 8 8 C 1.46591 * 125.45755 * 359.97438 * 7 3 2 9 9 O 1.21696 * 119.99619 * 0.03305 * 8 7 3 10 10 N 1.34778 * 119.99853 * 180.02562 * 8 7 3 11 11 C 1.46497 * 119.99779 * 180.02562 * 10 8 7 12 12 C 1.53944 * 113.74177 * 253.73936 * 11 10 8 13 13 N 1.47812 * 86.03673 * 222.08305 * 12 11 10 14 14 C 1.36931 * 134.45533 * 204.64194 * 13 12 11 15 15 H 1.07999 * 120.00282 * 173.35681 * 14 13 12 16 16 C 1.38815 * 120.00342 * 353.34771 * 14 13 12 17 17 N 1.31624 * 119.99850 * 5.06996 * 16 14 13 18 18 Si 1.86801 * 120.00388 * 185.06481 * 16 14 13 19 19 H 1.48492 * 109.47273 * 94.98846 * 18 16 14 20 20 H 1.48500 * 109.47134 * 214.99577 * 18 16 14 21 21 H 1.48506 * 109.46756 * 334.98833 * 18 16 14 22 22 C 1.47581 * 91.04895 * 24.55110 * 13 12 11 23 23 H 1.08998 * 109.47162 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47142 * 299.99870 * 1 2 3 25 25 H 1.09000 * 109.47595 * 59.99874 * 1 2 3 26 26 H 1.09003 * 109.46536 * 240.00497 * 2 1 3 27 27 H 1.08992 * 109.47016 * 120.00730 * 2 1 3 28 28 H 1.07995 * 122.44916 * 0.02562 * 4 3 2 29 29 H 1.07994 * 124.51956 * 179.97438 * 5 4 3 30 30 H 0.96998 * 119.99834 * 0.02562 * 10 8 7 31 31 H 1.09005 * 112.94356 * 25.33562 * 11 10 8 32 32 H 1.08998 * 113.76762 * 336.35285 * 12 11 10 33 33 H 1.09001 * 113.76821 * 107.74368 * 12 11 10 34 34 H 0.96997 * 120.00191 * 180.02562 * 17 16 14 35 35 H 1.09004 * 113.76639 * 221.14566 * 22 13 12 36 36 H 1.09001 * 113.77305 * 89.75344 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3791 2.0999 -1.1439 5 6 2.8042 3.3542 -0.9526 6 16 2.7919 3.7564 0.7055 7 6 2.1886 2.1623 1.1371 8 6 1.8987 1.7027 2.4986 9 8 1.4826 0.5743 2.6841 10 7 2.0932 2.5299 3.5447 11 6 1.8040 2.0704 4.9054 12 6 0.5217 2.6757 5.5046 13 7 1.2979 2.8236 6.7538 14 6 0.9722 2.9048 8.0813 15 1 1.7511 2.9054 8.8295 16 6 -0.3592 2.9867 8.4656 17 7 -1.3121 2.8859 7.5632 18 14 -0.7986 3.2397 10.2635 19 1 -1.0024 4.6873 10.5243 20 1 -2.0474 2.4996 10.5768 21 1 0.3047 2.7331 11.1187 22 6 2.5642 2.8462 5.9963 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 2.3125 1.6539 -2.1252 29 1 3.1144 4.0225 -1.7422 30 1 2.4246 3.4294 3.3967 31 1 1.8691 0.9874 5.0110 32 1 0.2310 3.6242 5.0530 33 1 -0.3042 1.9685 5.5803 34 1 -2.2424 2.9434 7.8316 35 1 3.3661 2.2749 6.4639 36 1 2.8749 3.8450 5.6894 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031431849.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:25 Heat of formation + Delta-G solvation = 46.333685 kcal Electronic energy + Delta-G solvation = -19250.091804 eV Core-core repulsion = 16248.665029 eV Total energy + Delta-G solvation = -3001.426775 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -39.81674 -38.36375 -37.15106 -33.60092 -32.70252 -31.87312 -29.46897 -27.38919 -25.40051 -24.84289 -23.23023 -22.39702 -21.14897 -19.81440 -18.45442 -18.15036 -16.77373 -15.88506 -15.80564 -15.05082 -14.98753 -14.60387 -14.06243 -13.84038 -13.63413 -13.55857 -13.01103 -12.67846 -12.42763 -11.92333 -11.89455 -11.50900 -11.47368 -11.44904 -11.03399 -10.87019 -10.82098 -10.70240 -10.46748 -10.03995 -9.58407 -9.53013 -8.93349 -8.81343 -8.55932 -8.42772 -6.92301 -5.79825 -3.13048 0.47261 1.40707 1.79503 2.32831 3.37481 3.39533 3.41655 3.46376 3.48492 4.45319 4.70649 4.89617 5.07703 5.10434 5.20234 5.35405 5.45181 5.50565 5.57092 5.66057 5.75358 5.92934 6.00143 6.06869 6.19045 6.23448 6.37215 6.43225 6.47866 6.56470 6.73481 7.22513 7.33390 7.54182 7.81539 7.94478 8.46775 9.01248 9.67592 10.54763 11.37516 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.030370 B = 0.003840 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.754522 B = 7289.966634 C = 7761.351679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.071 4.071 3 C -0.025 4.025 4 C -0.145 4.145 5 C -0.235 4.235 6 S 0.192 5.808 7 C -0.260 4.260 8 C 0.586 3.414 9 O -0.525 6.525 10 N -0.711 5.711 11 C 0.092 3.908 12 C 0.157 3.843 13 N -0.606 5.606 14 C -0.227 4.227 15 H 0.082 0.918 16 C -0.004 4.004 17 N -0.916 5.916 18 Si 0.912 3.088 19 H -0.288 1.288 20 H -0.290 1.290 21 H -0.279 1.279 22 C 0.112 3.888 23 H 0.057 0.943 24 H 0.062 0.938 25 H 0.047 0.953 26 H 0.065 0.935 27 H 0.096 0.904 28 H 0.142 0.858 29 H 0.166 0.834 30 H 0.393 0.607 31 H 0.113 0.887 32 H 0.030 0.970 33 H 0.074 0.926 34 H 0.255 0.745 35 H 0.050 0.950 36 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.660 0.416 -18.810 20.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.110 4.110 3 C -0.040 4.040 4 C -0.177 4.177 5 C -0.372 4.372 6 S 0.461 5.539 7 C -0.381 4.381 8 C 0.371 3.629 9 O -0.403 6.403 10 N -0.361 5.361 11 C -0.012 4.012 12 C 0.031 3.969 13 N -0.333 5.333 14 C -0.355 4.355 15 H 0.100 0.900 16 C -0.201 4.201 17 N -0.562 5.562 18 Si 0.742 3.258 19 H -0.216 1.216 20 H -0.216 1.216 21 H -0.205 1.205 22 C -0.015 4.015 23 H 0.076 0.924 24 H 0.082 0.918 25 H 0.066 0.934 26 H 0.084 0.916 27 H 0.114 0.886 28 H 0.160 0.840 29 H 0.184 0.816 30 H 0.226 0.774 31 H 0.131 0.869 32 H 0.048 0.952 33 H 0.092 0.908 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 8.533 0.964 -17.529 19.519 hybrid contribution -0.485 -0.274 -0.179 0.585 sum 8.049 0.690 -17.707 19.463 Atomic orbital electron populations 1.21610 0.94237 1.01790 1.01889 1.20404 0.96606 0.90535 1.03446 1.19530 0.96438 0.97611 0.90421 1.19907 1.03909 0.94229 0.99615 1.25206 1.08774 1.01355 1.01883 1.83044 1.60230 1.11956 0.98700 1.24628 1.16151 0.99245 0.98030 1.16938 0.77997 0.85275 0.82647 1.90787 1.45700 1.18957 1.84883 1.46057 1.66834 1.16048 1.07200 1.23979 0.99589 1.00509 0.77140 1.22656 0.93489 0.97221 0.83530 1.45698 1.00939 1.85327 1.01333 1.18991 0.91902 1.44356 0.80234 0.89978 1.24852 0.95470 1.01872 0.97955 1.69849 0.99136 1.55175 1.32088 0.86098 0.77832 0.77747 0.84089 1.21570 1.21618 1.20456 1.22877 0.91707 0.96514 0.90399 0.92379 0.91847 0.93437 0.91602 0.88600 0.84027 0.81609 0.77363 0.86907 0.95172 0.90811 0.93496 0.93143 0.94731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 9.78 37.16 0.36 -1.32 16 2 C -0.07 -0.86 5.50 -27.88 -0.15 -1.01 16 3 C -0.03 -0.31 5.16 -105.48 -0.54 -0.86 16 4 C -0.14 -1.45 9.96 -41.41 -0.41 -1.86 16 5 C -0.23 -2.12 10.92 29.18 0.32 -1.80 16 6 S 0.19 1.98 22.16 -107.50 -2.38 -0.40 16 7 C -0.26 -3.56 6.45 -36.79 -0.24 -3.79 16 8 C 0.59 9.79 7.78 -12.89 -0.10 9.69 16 9 O -0.52 -10.22 13.34 5.19 0.07 -10.15 16 10 N -0.71 -11.60 5.37 -56.68 -0.30 -11.90 16 11 C 0.09 1.82 4.40 -70.15 -0.31 1.51 16 12 C 0.16 3.81 7.24 -2.84 -0.02 3.79 16 13 N -0.61 -15.65 3.70 -177.88 -0.66 -16.31 16 14 C -0.23 -6.41 10.70 -15.06 -0.16 -6.57 16 15 H 0.08 2.22 7.83 -52.49 -0.41 1.80 16 16 C 0.00 -0.12 5.50 -17.43 -0.10 -0.22 16 17 N -0.92 -27.53 11.51 55.49 0.64 -26.89 16 18 Si 0.91 22.18 29.56 -169.99 -5.02 17.15 16 19 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 C 0.11 2.26 8.69 -2.97 -0.03 2.23 16 23 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.06 0.94 7.60 -51.93 -0.39 0.55 16 25 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 26 H 0.07 0.64 8.12 -51.93 -0.42 0.22 16 27 H 0.10 1.38 6.33 -51.93 -0.33 1.05 16 28 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 29 H 0.17 1.03 8.06 -52.49 -0.42 0.61 16 30 H 0.39 5.46 7.83 -40.82 -0.32 5.14 16 31 H 0.11 2.37 7.51 -51.93 -0.39 1.98 16 32 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.07 2.01 7.37 -51.93 -0.38 1.63 16 34 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 35 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 36 H 0.04 0.65 8.11 -51.93 -0.42 0.22 16 LS Contribution 316.70 15.07 4.77 4.77 Total: -1.00 -32.30 316.70 -9.01 -41.30 By element: Atomic # 1 Polarization: 7.39 SS G_CDS: -4.74 Total: 2.65 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: -1.38 Total: -0.21 kcal Atomic # 7 Polarization: -54.78 SS G_CDS: -0.32 Total: -55.11 kcal Atomic # 8 Polarization: -10.22 SS G_CDS: 0.07 Total: -10.15 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.15 kcal Atomic # 16 Polarization: 1.98 SS G_CDS: -2.38 Total: -0.40 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.30 -9.01 -41.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031431849.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.637 kcal (2) G-P(sol) polarization free energy of solvation -32.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds