Wall clock time and date at job start Tue Mar 31 2020 01:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.50696 * 109.47126 * 2 1 4 4 C 1.37474 * 123.35409 * 264.97663 * 3 2 1 5 5 C 1.33818 * 115.09922 * 179.97438 * 4 3 2 6 6 S 1.70615 * 110.95549 * 0.02562 * 5 4 3 7 7 C 1.36646 * 123.34988 * 84.98057 * 3 2 1 8 8 C 1.46591 * 125.45755 * 359.97438 * 7 3 2 9 9 O 1.21696 * 119.99619 * 0.03305 * 8 7 3 10 10 N 1.34778 * 119.99853 * 180.02562 * 8 7 3 11 11 C 1.46497 * 119.99779 * 180.02562 * 10 8 7 12 12 C 1.53944 * 113.74177 * 253.73936 * 11 10 8 13 13 N 1.47812 * 86.03673 * 222.08305 * 12 11 10 14 14 C 1.36931 * 134.45533 * 204.64194 * 13 12 11 15 15 H 1.07999 * 120.00282 * 173.35681 * 14 13 12 16 16 C 1.38815 * 120.00342 * 353.34771 * 14 13 12 17 17 N 1.31624 * 119.99850 * 5.06996 * 16 14 13 18 18 Si 1.86801 * 120.00388 * 185.06481 * 16 14 13 19 19 H 1.48492 * 109.47273 * 94.98846 * 18 16 14 20 20 H 1.48500 * 109.47134 * 214.99577 * 18 16 14 21 21 H 1.48506 * 109.46756 * 334.98833 * 18 16 14 22 22 C 1.47581 * 91.04895 * 24.55110 * 13 12 11 23 23 H 1.08998 * 109.47162 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47142 * 299.99870 * 1 2 3 25 25 H 1.09000 * 109.47595 * 59.99874 * 1 2 3 26 26 H 1.09003 * 109.46536 * 240.00497 * 2 1 3 27 27 H 1.08992 * 109.47016 * 120.00730 * 2 1 3 28 28 H 1.07995 * 122.44916 * 0.02562 * 4 3 2 29 29 H 1.07994 * 124.51956 * 179.97438 * 5 4 3 30 30 H 0.96998 * 119.99834 * 0.02562 * 10 8 7 31 31 H 1.09005 * 112.94356 * 25.33562 * 11 10 8 32 32 H 1.08998 * 113.76762 * 336.35285 * 12 11 10 33 33 H 1.09001 * 113.76821 * 107.74368 * 12 11 10 34 34 H 0.96997 * 120.00191 * 180.02562 * 17 16 14 35 35 H 1.09004 * 113.76639 * 221.14566 * 22 13 12 36 36 H 1.09001 * 113.77305 * 89.75344 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3791 2.0999 -1.1439 5 6 2.8042 3.3542 -0.9526 6 16 2.7919 3.7564 0.7055 7 6 2.1886 2.1623 1.1371 8 6 1.8987 1.7027 2.4986 9 8 1.4826 0.5743 2.6841 10 7 2.0932 2.5299 3.5447 11 6 1.8040 2.0704 4.9054 12 6 0.5217 2.6757 5.5046 13 7 1.2979 2.8236 6.7538 14 6 0.9722 2.9048 8.0813 15 1 1.7511 2.9054 8.8295 16 6 -0.3592 2.9867 8.4656 17 7 -1.3121 2.8859 7.5632 18 14 -0.7986 3.2397 10.2635 19 1 -1.0024 4.6873 10.5243 20 1 -2.0474 2.4996 10.5768 21 1 0.3047 2.7331 11.1187 22 6 2.5642 2.8462 5.9963 23 1 -0.3633 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8933 -0.5138 -0.8901 27 1 1.8933 -0.5139 0.8899 28 1 2.3125 1.6539 -2.1252 29 1 3.1144 4.0225 -1.7422 30 1 2.4246 3.4294 3.3967 31 1 1.8691 0.9874 5.0110 32 1 0.2310 3.6242 5.0530 33 1 -0.3042 1.9685 5.5803 34 1 -2.2424 2.9434 7.8316 35 1 3.3661 2.2749 6.4639 36 1 2.8749 3.8450 5.6894 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031431849.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:38:24 Heat of formation + Delta-G solvation = 25.039811 kcal Electronic energy + Delta-G solvation = -19251.015176 eV Core-core repulsion = 16248.665029 eV Total energy + Delta-G solvation = -3002.350147 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.14154 -39.69912 -38.50856 -35.20855 -33.85860 -33.59663 -30.61963 -29.20666 -26.67089 -26.48000 -24.93341 -23.29443 -22.47719 -21.46660 -19.69514 -19.11462 -18.76995 -17.26269 -17.02477 -16.84375 -16.18784 -15.91418 -15.70890 -15.02106 -14.78509 -14.73625 -14.46256 -13.88406 -13.71077 -13.37512 -13.26584 -13.20573 -12.82439 -12.82092 -12.65726 -12.39200 -12.31710 -12.01510 -11.90857 -11.62958 -11.53385 -10.93819 -10.87246 -10.11288 -9.69061 -9.36660 -8.99234 -7.94904 -5.30001 -0.43870 0.54973 0.98759 1.44977 1.45365 1.47731 1.57004 2.08379 2.18522 2.48969 3.21605 3.37944 3.80062 3.83268 3.92938 4.18738 4.28758 4.36494 4.47870 4.50026 4.55338 4.71402 4.78735 4.86942 4.90790 5.07780 5.10785 5.14158 5.18987 5.34882 5.44348 5.45790 5.57479 5.64715 5.85941 6.49999 6.85705 7.17486 7.55743 8.49053 9.22796 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.030370 B = 0.003840 C = 0.003607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 921.754522 B = 7289.966634 C = 7761.351679 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.072 4.072 3 C -0.023 4.023 4 C -0.156 4.156 5 C -0.212 4.212 6 S 0.221 5.779 7 C -0.307 4.307 8 C 0.583 3.417 9 O -0.563 6.563 10 N -0.704 5.704 11 C 0.121 3.879 12 C 0.156 3.844 13 N -0.637 5.637 14 C -0.238 4.238 15 H 0.092 0.908 16 C -0.067 4.067 17 N -0.955 5.955 18 Si 0.983 3.017 19 H -0.285 1.285 20 H -0.296 1.296 21 H -0.263 1.263 22 C 0.122 3.878 23 H 0.065 0.935 24 H 0.027 0.973 25 H 0.066 0.934 26 H 0.095 0.905 27 H 0.067 0.933 28 H 0.170 0.830 29 H 0.203 0.797 30 H 0.407 0.593 31 H 0.097 0.903 32 H 0.024 0.976 33 H 0.030 0.970 34 H 0.249 0.751 35 H 0.068 0.932 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.586 1.678 -20.647 23.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.111 4.111 3 C -0.039 4.039 4 C -0.187 4.187 5 C -0.350 4.350 6 S 0.490 5.510 7 C -0.427 4.427 8 C 0.372 3.628 9 O -0.444 6.444 10 N -0.355 5.355 11 C 0.015 3.985 12 C 0.030 3.970 13 N -0.364 5.364 14 C -0.366 4.366 15 H 0.110 0.890 16 C -0.260 4.260 17 N -0.603 5.603 18 Si 0.810 3.190 19 H -0.212 1.212 20 H -0.223 1.223 21 H -0.187 1.187 22 C -0.003 4.003 23 H 0.084 0.916 24 H 0.046 0.954 25 H 0.085 0.915 26 H 0.114 0.886 27 H 0.085 0.915 28 H 0.188 0.812 29 H 0.220 0.780 30 H 0.243 0.757 31 H 0.115 0.885 32 H 0.042 0.958 33 H 0.048 0.952 34 H 0.058 0.942 35 H 0.086 0.914 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 10.520 2.254 -19.389 22.174 hybrid contribution -1.025 -0.654 0.245 1.240 sum 9.495 1.600 -19.144 21.429 Atomic orbital electron populations 1.21560 0.94523 1.02042 1.00958 1.20398 0.96342 0.90971 1.03431 1.19806 0.95413 0.97555 0.91105 1.20099 1.04235 0.94544 0.99809 1.25707 1.06070 1.01321 1.01874 1.82918 1.59167 1.09214 0.99685 1.24382 1.19762 1.02069 0.96447 1.17406 0.76876 0.84675 0.83870 1.90766 1.47287 1.20614 1.85730 1.45790 1.67045 1.16849 1.05828 1.23250 0.96728 0.99343 0.79141 1.22518 0.94048 0.96169 0.84308 1.46014 1.03525 1.85689 1.01187 1.19454 0.92340 1.43022 0.81799 0.89049 1.25752 0.95500 1.02389 1.02347 1.70057 0.99061 1.57008 1.34163 0.84998 0.77420 0.77451 0.79094 1.21181 1.22282 1.18747 1.23012 0.90191 0.97995 0.89146 0.91637 0.95412 0.91519 0.88638 0.91495 0.81246 0.78000 0.75696 0.88488 0.95795 0.95151 0.94193 0.91380 0.91832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.26 9.78 71.98 0.70 -2.55 16 2 C -0.07 -1.72 5.50 29.85 0.16 -1.56 16 3 C -0.02 -0.53 5.16 -20.42 -0.11 -0.64 16 4 C -0.16 -2.56 9.96 21.08 0.21 -2.35 16 5 C -0.21 -2.92 10.92 66.81 0.73 -2.19 16 6 S 0.22 3.98 22.16 -56.49 -1.25 2.73 16 7 C -0.31 -8.17 6.45 24.08 0.16 -8.01 16 8 C 0.58 19.97 7.78 86.42 0.67 20.64 16 9 O -0.56 -23.17 13.34 -4.34 -0.06 -23.23 16 10 N -0.70 -23.08 5.37 -451.46 -2.42 -25.50 16 11 C 0.12 4.89 4.40 46.75 0.21 5.10 16 12 C 0.16 7.90 7.24 86.44 0.63 8.52 16 13 N -0.64 -33.35 3.70 -716.70 -2.65 -36.00 16 14 C -0.24 -13.54 10.70 84.04 0.90 -12.64 16 15 H 0.09 4.88 7.83 -2.91 -0.02 4.85 16 16 C -0.07 -3.88 5.50 84.86 0.47 -3.41 16 17 N -0.95 -59.55 11.51 21.65 0.25 -59.31 16 18 Si 0.98 46.25 29.56 68.60 2.03 48.28 16 19 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 20 H -0.30 -14.09 7.11 99.48 0.71 -13.39 16 21 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 22 C 0.12 4.80 8.69 86.48 0.75 5.55 16 23 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.03 0.86 7.60 -2.39 -0.02 0.84 16 25 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.10 1.66 8.12 -2.39 -0.02 1.64 16 27 H 0.07 2.00 6.33 -2.39 -0.02 1.98 16 28 H 0.17 1.81 8.06 -2.91 -0.02 1.79 16 29 H 0.20 1.33 8.06 -2.91 -0.02 1.30 16 30 H 0.41 10.92 7.83 -92.71 -0.73 10.20 16 31 H 0.10 4.26 7.51 -2.38 -0.02 4.24 16 32 H 0.02 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.03 1.77 7.37 -2.39 -0.02 1.75 16 34 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 35 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 36 H 0.06 2.20 8.11 -2.39 -0.02 2.18 16 Total: -1.00 -73.47 316.70 1.74 -71.73 By element: Atomic # 1 Polarization: 14.46 SS G_CDS: 0.37 Total: 14.83 kcal Atomic # 6 Polarization: 0.99 SS G_CDS: 5.48 Total: 6.47 kcal Atomic # 7 Polarization: -115.98 SS G_CDS: -4.83 Total: -120.81 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: -0.06 Total: -23.23 kcal Atomic # 14 Polarization: 46.25 SS G_CDS: 2.03 Total: 48.28 kcal Atomic # 16 Polarization: 3.98 SS G_CDS: -1.25 Total: 2.73 kcal Total: -73.47 1.74 -71.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031431849.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.771 kcal (2) G-P(sol) polarization free energy of solvation -73.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds