Wall clock time and date at job start Tue Mar 31 2020 01:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32774 * 123.45879 * 2 1 4 4 S 1.75500 * 110.57366 * 179.73404 * 3 2 1 5 5 C 1.70444 * 92.44757 * 359.97438 * 4 3 2 6 6 C 1.36013 * 110.81665 * 359.97438 * 5 4 3 7 7 C 1.47183 * 123.45867 * 180.02562 * 6 5 4 8 8 O 1.21639 * 119.99781 * 179.97438 * 7 6 5 9 9 N 1.34780 * 120.00403 * 359.97438 * 7 6 5 10 10 C 1.46502 * 120.00145 * 180.02562 * 9 7 6 11 11 C 1.52991 * 109.46909 * 179.97438 * 10 9 7 12 12 C 1.53939 * 113.74590 * 273.73724 * 11 10 9 13 13 N 1.47815 * 86.04270 * 222.08573 * 12 11 10 14 14 C 1.36930 * 134.45819 * 204.64430 * 13 12 11 15 15 H 1.08001 * 119.99703 * 179.86791 * 14 13 12 16 16 C 1.38806 * 120.00347 * 359.86768 * 14 13 12 17 17 N 1.31625 * 120.00094 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00294 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46752 * 0.02562 * 18 16 14 20 20 H 1.48510 * 109.46705 * 119.99856 * 18 16 14 21 21 H 1.48489 * 109.47262 * 239.99764 * 18 16 14 22 22 C 1.47585 * 91.04602 * 24.54956 * 13 12 11 23 23 H 1.09001 * 109.47079 * 90.02022 * 1 2 3 24 24 H 1.08993 * 109.47197 * 210.02593 * 1 2 3 25 25 H 1.09000 * 109.47152 * 330.02519 * 1 2 3 26 26 H 1.08004 * 124.70891 * 359.75337 * 3 2 1 27 27 H 1.08003 * 124.59179 * 179.97438 * 5 4 3 28 28 H 0.96998 * 119.99383 * 359.97438 * 9 7 6 29 29 H 1.09001 * 109.47092 * 300.00032 * 10 9 7 30 30 H 1.09004 * 109.46950 * 59.99916 * 10 9 7 31 31 H 1.09005 * 112.94530 * 45.33605 * 11 10 9 32 32 H 1.08998 * 113.76927 * 336.35362 * 12 11 10 33 33 H 1.09004 * 113.77035 * 107.75045 * 12 11 10 34 34 H 0.96995 * 120.00405 * 180.02562 * 17 16 14 35 35 H 1.09001 * 113.77013 * 221.15123 * 22 13 12 36 36 H 1.09003 * 113.77060 * 89.75547 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2390 1.1077 0.0000 4 16 3.9498 0.7164 0.0076 5 6 3.6410 -0.9599 0.0115 6 6 2.3032 -1.2049 0.0077 7 6 1.7262 -2.5589 0.0103 8 8 0.5187 -2.7054 0.0071 9 7 2.5357 -3.6365 0.0162 10 6 1.9614 -4.9842 0.0182 11 6 3.0884 -6.0188 0.0243 12 6 3.6113 -6.3742 -1.3793 13 7 3.6271 -7.7748 -0.9069 14 6 4.3235 -8.8989 -1.2622 15 1 4.1469 -9.8298 -0.7439 16 6 5.2565 -8.8421 -2.2884 17 7 5.4714 -7.7076 -2.9203 18 14 6.2071 -10.3755 -2.7726 19 1 5.7832 -11.5118 -1.9156 20 1 5.9319 -10.6997 -4.1955 21 1 7.6611 -10.1341 -2.5921 22 6 2.5931 -7.4744 0.1025 23 1 -0.3633 -0.0004 -1.0277 24 1 -0.3633 -0.8897 0.5142 25 1 -0.3633 0.8902 0.5134 26 1 1.8374 2.1103 -0.0038 27 1 4.4043 -1.7239 0.0163 28 1 3.4986 -3.5196 0.0183 29 1 1.3432 -5.1144 0.9065 30 1 1.3492 -5.1196 -0.8735 31 1 3.8765 -5.7844 0.7399 32 1 2.8918 -6.1875 -2.1764 33 1 4.6008 -5.9709 -1.5946 34 1 6.1231 -7.6680 -3.6377 35 1 2.7711 -7.9478 1.0681 36 1 1.5738 -7.6116 -0.2584 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031602935.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:25:08 Heat of formation + Delta-G solvation = 44.742888 kcal Electronic energy + Delta-G solvation = -18916.550036 eV Core-core repulsion = 15915.054278 eV Total energy + Delta-G solvation = -3001.495757 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.94329 -38.15928 -37.07495 -34.48930 -32.28069 -31.25812 -28.84631 -27.71816 -25.93332 -24.81509 -24.11790 -22.06804 -20.77292 -19.53162 -18.46676 -17.89029 -16.91145 -16.67183 -15.63542 -15.31577 -14.83724 -14.52592 -14.02975 -13.76474 -13.53308 -13.37310 -13.12832 -12.84079 -12.75102 -12.34752 -12.13834 -11.96308 -11.42024 -11.34636 -11.05191 -11.01348 -10.73925 -10.57114 -9.99001 -9.77101 -9.64280 -9.43798 -9.09037 -8.85469 -8.81704 -8.45546 -6.89390 -5.78628 -3.10720 0.62784 1.38375 1.75317 1.88954 3.32819 3.37718 3.41233 3.43214 3.45587 4.43827 4.51396 4.90862 5.02997 5.13847 5.18986 5.30590 5.35458 5.42058 5.54434 5.64661 5.68677 5.82152 5.87593 6.02790 6.10342 6.22733 6.33895 6.44339 6.55512 6.63688 6.74609 7.19967 7.33476 7.53104 7.65338 7.96327 8.33911 9.03143 9.69318 10.58277 11.38671 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.028168 B = 0.003356 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.810475 B = 8340.481919 C = 9058.628508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.050 4.050 3 C -0.249 4.249 4 S 0.178 5.822 5 C -0.208 4.208 6 C -0.150 4.150 7 C 0.573 3.427 8 O -0.539 6.539 9 N -0.716 5.716 10 C 0.131 3.869 11 C -0.154 4.154 12 C 0.168 3.832 13 N -0.613 5.613 14 C -0.222 4.222 15 H 0.080 0.920 16 C -0.009 4.009 17 N -0.922 5.922 18 Si 0.912 3.088 19 H -0.279 1.279 20 H -0.290 1.290 21 H -0.290 1.290 22 C 0.129 3.871 23 H 0.071 0.929 24 H 0.093 0.907 25 H 0.060 0.940 26 H 0.167 0.833 27 H 0.172 0.828 28 H 0.400 0.600 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.089 0.911 32 H 0.028 0.972 33 H 0.072 0.928 34 H 0.253 0.747 35 H 0.045 0.955 36 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.514 18.524 7.368 20.440 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.061 4.061 3 C -0.383 4.383 4 S 0.446 5.554 5 C -0.346 4.346 6 C -0.169 4.169 7 C 0.359 3.641 8 O -0.418 6.418 9 N -0.366 5.366 10 C 0.007 3.993 11 C -0.174 4.174 12 C 0.043 3.957 13 N -0.339 5.339 14 C -0.350 4.350 15 H 0.098 0.902 16 C -0.205 4.205 17 N -0.569 5.569 18 Si 0.742 3.258 19 H -0.205 1.205 20 H -0.217 1.217 21 H -0.217 1.217 22 C 0.002 3.998 23 H 0.090 0.910 24 H 0.112 0.888 25 H 0.079 0.921 26 H 0.184 0.816 27 H 0.190 0.810 28 H 0.234 0.766 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.107 0.893 32 H 0.046 0.954 33 H 0.090 0.910 34 H 0.063 0.937 35 H 0.064 0.936 36 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -3.794 19.063 7.183 20.722 hybrid contribution -0.166 -1.713 -0.512 1.795 sum -3.960 17.350 6.671 19.006 Atomic orbital electron populations 1.20658 0.88696 1.03621 1.02954 1.19886 0.97572 0.89896 0.98777 1.25291 0.96415 1.02560 1.14080 1.82993 1.05684 0.97011 1.69751 1.25707 0.99778 1.02829 1.06306 1.20252 0.92070 0.94585 1.09960 1.17573 0.86402 0.83552 0.76599 1.90725 1.14067 1.86507 1.50512 1.45937 1.10086 1.06179 1.74409 1.21475 0.96383 0.79489 1.01916 1.23810 0.97196 0.94162 1.02215 1.22356 0.99214 0.84226 0.89909 1.45990 1.41698 1.07288 1.38941 1.19085 1.14115 0.87704 1.14063 0.90184 1.24782 0.99954 0.97374 0.98419 1.69822 1.37246 1.24128 1.25752 0.86047 0.79590 0.82040 0.78101 1.20452 1.21739 1.21702 1.22487 0.92941 0.90747 0.93607 0.91024 0.88836 0.92069 0.81563 0.81035 0.76579 0.91773 0.91228 0.89258 0.95446 0.91014 0.93724 0.93637 0.94586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.10 9.55 36.01 0.34 -0.75 16 2 C -0.05 -0.58 6.01 -104.06 -0.63 -1.21 16 3 C -0.25 -2.31 10.91 28.86 0.31 -2.00 16 4 S 0.18 1.51 23.02 -107.50 -2.47 -0.96 16 5 C -0.21 -2.14 10.38 29.93 0.31 -1.83 16 6 C -0.15 -1.91 5.98 -104.63 -0.63 -2.53 16 7 C 0.57 8.62 7.79 -12.63 -0.10 8.52 16 8 O -0.54 -9.52 14.20 5.24 0.07 -9.45 16 9 N -0.72 -10.07 5.52 -61.46 -0.34 -10.41 16 10 C 0.13 2.04 5.51 -4.05 -0.02 2.02 16 11 C -0.15 -2.73 3.93 -89.70 -0.35 -3.08 16 12 C 0.17 3.85 7.08 -2.84 -0.02 3.83 16 13 N -0.61 -15.66 3.70 -177.66 -0.66 -16.32 16 14 C -0.22 -6.25 10.70 -15.06 -0.16 -6.41 16 15 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 16 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 17 N -0.92 -27.21 11.39 55.49 0.63 -26.58 16 18 Si 0.91 22.12 29.55 -169.99 -5.02 17.09 16 19 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 20 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 C 0.13 2.58 8.51 -2.96 -0.03 2.56 16 23 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 24 H 0.09 1.22 6.01 -51.93 -0.31 0.91 16 25 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 26 H 0.17 1.13 8.06 -52.48 -0.42 0.71 16 27 H 0.17 1.46 7.01 -52.48 -0.37 1.09 16 28 H 0.40 4.85 6.97 -40.82 -0.28 4.57 16 29 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 30 H 0.07 1.18 7.87 -51.93 -0.41 0.78 16 31 H 0.09 1.52 8.14 -51.93 -0.42 1.09 16 32 H 0.03 0.66 7.92 -51.93 -0.41 0.25 16 33 H 0.07 1.79 7.17 -51.93 -0.37 1.42 16 34 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 35 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.04 0.70 8.10 -51.93 -0.42 0.28 16 LS Contribution 316.52 15.07 4.77 4.77 Total: -1.00 -32.69 316.52 -8.74 -41.43 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -4.66 Total: 1.66 kcal Atomic # 6 Polarization: -0.18 SS G_CDS: -1.06 Total: -1.24 kcal Atomic # 7 Polarization: -52.95 SS G_CDS: -0.37 Total: -53.31 kcal Atomic # 8 Polarization: -9.52 SS G_CDS: 0.07 Total: -9.45 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.09 kcal Atomic # 16 Polarization: 1.51 SS G_CDS: -2.47 Total: -0.96 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.69 -8.74 -41.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031602935.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.171 kcal (2) G-P(sol) polarization free energy of solvation -32.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds