Wall clock time and date at job start Tue Mar 31 2020 01:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.32774 * 123.45879 * 2 1 4 4 S 1.75500 * 110.57366 * 179.73404 * 3 2 1 5 5 C 1.70444 * 92.44757 * 359.97438 * 4 3 2 6 6 C 1.36013 * 110.81665 * 359.97438 * 5 4 3 7 7 C 1.47183 * 123.45867 * 180.02562 * 6 5 4 8 8 O 1.21639 * 119.99781 * 179.97438 * 7 6 5 9 9 N 1.34780 * 120.00403 * 359.97438 * 7 6 5 10 10 C 1.46502 * 120.00145 * 180.02562 * 9 7 6 11 11 C 1.52991 * 109.46909 * 179.97438 * 10 9 7 12 12 C 1.53939 * 113.74590 * 273.73724 * 11 10 9 13 13 N 1.47815 * 86.04270 * 222.08573 * 12 11 10 14 14 C 1.36930 * 134.45819 * 204.64430 * 13 12 11 15 15 H 1.08001 * 119.99703 * 179.86791 * 14 13 12 16 16 C 1.38806 * 120.00347 * 359.86768 * 14 13 12 17 17 N 1.31625 * 120.00094 * 359.97438 * 16 14 13 18 18 Si 1.86803 * 120.00294 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.46752 * 0.02562 * 18 16 14 20 20 H 1.48510 * 109.46705 * 119.99856 * 18 16 14 21 21 H 1.48489 * 109.47262 * 239.99764 * 18 16 14 22 22 C 1.47585 * 91.04602 * 24.54956 * 13 12 11 23 23 H 1.09001 * 109.47079 * 90.02022 * 1 2 3 24 24 H 1.08993 * 109.47197 * 210.02593 * 1 2 3 25 25 H 1.09000 * 109.47152 * 330.02519 * 1 2 3 26 26 H 1.08004 * 124.70891 * 359.75337 * 3 2 1 27 27 H 1.08003 * 124.59179 * 179.97438 * 5 4 3 28 28 H 0.96998 * 119.99383 * 359.97438 * 9 7 6 29 29 H 1.09001 * 109.47092 * 300.00032 * 10 9 7 30 30 H 1.09004 * 109.46950 * 59.99916 * 10 9 7 31 31 H 1.09005 * 112.94530 * 45.33605 * 11 10 9 32 32 H 1.08998 * 113.76927 * 336.35362 * 12 11 10 33 33 H 1.09004 * 113.77035 * 107.75045 * 12 11 10 34 34 H 0.96995 * 120.00405 * 180.02562 * 17 16 14 35 35 H 1.09001 * 113.77013 * 221.15123 * 22 13 12 36 36 H 1.09003 * 113.77060 * 89.75547 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2390 1.1077 0.0000 4 16 3.9498 0.7164 0.0076 5 6 3.6410 -0.9599 0.0115 6 6 2.3032 -1.2049 0.0077 7 6 1.7262 -2.5589 0.0103 8 8 0.5187 -2.7054 0.0071 9 7 2.5357 -3.6365 0.0162 10 6 1.9614 -4.9842 0.0182 11 6 3.0884 -6.0188 0.0243 12 6 3.6113 -6.3742 -1.3793 13 7 3.6271 -7.7748 -0.9069 14 6 4.3235 -8.8989 -1.2622 15 1 4.1469 -9.8298 -0.7439 16 6 5.2565 -8.8421 -2.2884 17 7 5.4714 -7.7076 -2.9203 18 14 6.2071 -10.3755 -2.7726 19 1 5.7832 -11.5118 -1.9156 20 1 5.9319 -10.6997 -4.1955 21 1 7.6611 -10.1341 -2.5921 22 6 2.5931 -7.4744 0.1025 23 1 -0.3633 -0.0004 -1.0277 24 1 -0.3633 -0.8897 0.5142 25 1 -0.3633 0.8902 0.5134 26 1 1.8374 2.1103 -0.0038 27 1 4.4043 -1.7239 0.0163 28 1 3.4986 -3.5196 0.0183 29 1 1.3432 -5.1144 0.9065 30 1 1.3492 -5.1196 -0.8735 31 1 3.8765 -5.7844 0.7399 32 1 2.8918 -6.1875 -2.1764 33 1 4.6008 -5.9709 -1.5946 34 1 6.1231 -7.6680 -3.6377 35 1 2.7711 -7.9478 1.0681 36 1 1.5738 -7.6116 -0.2584 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031602935.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:25:07 Heat of formation + Delta-G solvation = 23.369947 kcal Electronic energy + Delta-G solvation = -18917.476836 eV Core-core repulsion = 15915.054278 eV Total energy + Delta-G solvation = -3002.422558 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.07059 -39.74705 -38.06063 -35.81870 -34.22243 -32.24946 -30.43725 -28.68900 -27.49959 -26.55586 -25.20090 -23.72484 -21.83385 -20.97651 -19.65951 -18.77570 -18.62139 -17.85664 -16.99524 -16.88383 -16.34325 -15.77309 -15.61321 -15.01354 -14.75203 -14.49878 -14.28062 -14.04229 -13.90436 -13.54981 -13.30617 -13.11071 -12.98741 -12.89110 -12.77322 -12.52673 -12.22289 -11.82251 -11.80650 -11.58484 -11.28299 -10.90092 -10.79004 -10.12517 -9.82008 -9.21963 -8.92687 -7.91576 -5.24826 -0.19528 0.65949 0.99377 1.00150 1.45356 1.46364 1.56596 2.20148 2.34988 2.46903 3.29500 3.38342 3.71946 3.76440 3.97513 4.10202 4.24177 4.34482 4.42663 4.58867 4.67671 4.75088 4.77405 4.84163 4.85619 4.88117 5.02582 5.09119 5.24736 5.30873 5.41772 5.53538 5.61040 5.63908 5.93127 6.54582 6.91684 7.21710 7.59980 8.55646 9.25543 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.028168 B = 0.003356 C = 0.003090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 993.810475 B = 8340.481919 C = 9058.628508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.079 4.079 3 C -0.244 4.244 4 S 0.240 5.760 5 C -0.211 4.211 6 C -0.182 4.182 7 C 0.571 3.429 8 O -0.573 6.573 9 N -0.712 5.712 10 C 0.143 3.857 11 C -0.115 4.115 12 C 0.165 3.835 13 N -0.645 5.645 14 C -0.235 4.235 15 H 0.084 0.916 16 C -0.068 4.068 17 N -0.953 5.953 18 Si 0.979 3.021 19 H -0.266 1.266 20 H -0.294 1.294 21 H -0.289 1.289 22 C 0.126 3.874 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.084 0.916 26 H 0.193 0.807 27 H 0.186 0.814 28 H 0.409 0.591 29 H 0.077 0.923 30 H 0.053 0.947 31 H 0.105 0.895 32 H 0.011 0.989 33 H 0.045 0.955 34 H 0.248 0.752 35 H 0.063 0.937 36 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.811 19.696 8.483 21.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.089 4.089 3 C -0.378 4.378 4 S 0.508 5.492 5 C -0.350 4.350 6 C -0.200 4.200 7 C 0.358 3.642 8 O -0.455 6.455 9 N -0.363 5.363 10 C 0.019 3.981 11 C -0.135 4.135 12 C 0.040 3.960 13 N -0.372 5.372 14 C -0.364 4.364 15 H 0.101 0.899 16 C -0.261 4.261 17 N -0.603 5.603 18 Si 0.807 3.193 19 H -0.190 1.190 20 H -0.222 1.222 21 H -0.216 1.216 22 C 0.001 3.999 23 H 0.085 0.915 24 H 0.085 0.915 25 H 0.103 0.897 26 H 0.211 0.789 27 H 0.203 0.797 28 H 0.246 0.754 29 H 0.096 0.904 30 H 0.072 0.928 31 H 0.123 0.877 32 H 0.028 0.972 33 H 0.064 0.936 34 H 0.057 0.943 35 H 0.082 0.918 36 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -3.095 20.245 8.330 22.109 hybrid contribution -0.365 -1.993 -0.840 2.193 sum -3.460 18.252 7.490 20.030 Atomic orbital electron populations 1.20581 0.88918 1.03449 1.02591 1.19999 0.97869 0.90324 1.00722 1.25651 0.97073 1.03125 1.11992 1.82841 1.04311 0.94614 1.67481 1.26013 0.99268 1.04961 1.04756 1.20162 0.93209 0.93581 1.13076 1.17981 0.86027 0.84552 0.75665 1.90705 1.15504 1.87122 1.52175 1.45830 1.10629 1.05479 1.74321 1.21204 0.95296 0.79791 1.01796 1.23404 0.97588 0.93769 0.98689 1.22271 0.97636 0.83725 0.92378 1.46413 1.43044 1.07441 1.40286 1.19485 1.14196 0.88806 1.13889 0.89858 1.25622 1.01318 1.00296 0.98819 1.70003 1.37982 1.26027 1.26247 0.85008 0.77933 0.78989 0.77383 1.18985 1.22153 1.21625 1.22696 0.92206 0.91939 0.93044 0.91529 0.91472 0.89703 0.78948 0.79653 0.75419 0.90440 0.92839 0.87731 0.97162 0.93641 0.94281 0.91848 0.93537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.09 9.55 71.24 0.68 -1.41 16 2 C -0.08 -1.74 6.01 -19.47 -0.12 -1.86 16 3 C -0.24 -3.89 10.91 66.64 0.73 -3.16 16 4 S 0.24 3.35 23.02 -56.49 -1.30 2.04 16 5 C -0.21 -3.97 10.38 67.30 0.70 -3.27 16 6 C -0.18 -4.48 5.98 -19.87 -0.12 -4.60 16 7 C 0.57 17.19 7.79 86.59 0.67 17.87 16 8 O -0.57 -20.76 14.20 -4.15 -0.06 -20.82 16 9 N -0.71 -19.66 5.52 -466.60 -2.58 -22.23 16 10 C 0.14 4.38 5.51 86.38 0.48 4.85 16 11 C -0.11 -3.97 3.93 -10.14 -0.04 -4.01 16 12 C 0.17 7.70 7.08 86.44 0.61 8.31 16 13 N -0.65 -33.05 3.70 -716.00 -2.65 -35.70 16 14 C -0.24 -13.28 10.70 84.03 0.90 -12.38 16 15 H 0.08 4.49 7.83 -2.91 -0.02 4.47 16 16 C -0.07 -3.87 5.50 84.86 0.47 -3.40 16 17 N -0.95 -57.44 11.39 21.65 0.25 -57.19 16 18 Si 0.98 45.76 29.55 68.60 2.03 47.79 16 19 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 20 H -0.29 -13.84 7.11 99.48 0.71 -13.13 16 21 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 22 C 0.13 4.92 8.51 86.49 0.74 5.66 16 23 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 24 H 0.07 1.82 6.01 -2.39 -0.01 1.80 16 25 H 0.08 1.34 8.13 -2.39 -0.02 1.32 16 26 H 0.19 1.93 8.06 -2.91 -0.02 1.91 16 27 H 0.19 2.78 7.01 -2.91 -0.02 2.76 16 28 H 0.41 9.55 6.97 -92.71 -0.65 8.90 16 29 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 30 H 0.05 1.83 7.87 -2.38 -0.02 1.81 16 31 H 0.10 3.35 8.14 -2.38 -0.02 3.33 16 32 H 0.01 0.52 7.92 -2.39 -0.02 0.50 16 33 H 0.05 2.34 7.17 -2.39 -0.02 2.32 16 34 H 0.25 14.49 8.31 -92.71 -0.77 13.72 16 35 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 36 H 0.05 1.75 8.10 -2.39 -0.02 1.73 16 Total: -1.00 -71.67 316.52 1.83 -69.84 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: 0.45 Total: 13.67 kcal Atomic # 6 Polarization: -3.09 SS G_CDS: 5.70 Total: 2.60 kcal Atomic # 7 Polarization: -110.14 SS G_CDS: -4.98 Total: -115.12 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: -0.06 Total: -20.82 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Atomic # 16 Polarization: 3.35 SS G_CDS: -1.30 Total: 2.04 kcal Total: -71.67 1.83 -69.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031602935.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.211 kcal (2) G-P(sol) polarization free energy of solvation -71.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.370 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds