Wall clock time and date at job start Tue Mar 31 2020 01:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 S 1.70444 * 124.59380 * 2 1 4 4 C 1.75508 * 92.44486 * 179.97438 * 3 2 1 5 5 C 1.32770 * 110.57385 * 359.73647 * 4 3 2 6 6 C 1.36017 * 124.58847 * 179.97438 * 2 1 3 7 7 C 1.47185 * 123.46107 * 359.97438 * 6 2 1 8 8 O 1.21638 * 120.00111 * 359.97438 * 7 6 2 9 9 N 1.34778 * 119.99781 * 179.97438 * 7 6 2 10 10 C 1.46501 * 120.00016 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.47379 * 179.97438 * 10 9 7 12 12 C 1.53495 * 114.20602 * 175.00131 * 11 10 9 13 13 N 1.47064 * 87.98647 * 87.71660 * 12 11 10 14 14 C 1.36929 * 136.05710 * 207.07951 * 13 12 11 15 15 H 1.08003 * 120.00152 * 6.50021 * 14 13 12 16 16 C 1.38818 * 120.00175 * 186.49548 * 14 13 12 17 17 N 1.31615 * 119.99847 * 6.43003 * 16 14 13 18 18 Si 1.86802 * 119.99925 * 186.42380 * 16 14 13 19 19 H 1.48502 * 109.46990 * 265.01960 * 18 16 14 20 20 H 1.48491 * 109.47236 * 25.02406 * 18 16 14 21 21 H 1.48506 * 109.46777 * 145.02360 * 18 16 14 22 22 C 1.47067 * 87.88549 * 27.33957 * 13 12 11 23 23 H 1.08998 * 109.46989 * 270.00057 * 1 2 3 24 24 H 1.08996 * 109.47095 * 29.99943 * 1 2 3 25 25 H 1.09001 * 109.47386 * 150.00319 * 1 2 3 26 26 H 1.08004 * 124.70977 * 179.97438 * 4 3 2 27 27 H 1.08005 * 123.45632 * 180.22763 * 5 4 3 28 28 H 0.96994 * 120.00340 * 359.97438 * 9 7 6 29 29 H 1.09001 * 109.46921 * 59.99536 * 10 9 7 30 30 H 1.08998 * 109.46807 * 300.00283 * 10 9 7 31 31 H 1.08998 * 113.27713 * 41.92709 * 11 10 9 32 32 H 1.08996 * 113.46596 * 332.93558 * 12 11 10 33 33 H 1.09007 * 113.51449 * 202.50808 * 12 11 10 34 34 H 0.97003 * 120.00226 * 179.97438 * 17 16 14 35 35 H 1.09005 * 113.46771 * 87.43754 * 22 13 12 36 36 H 1.09002 * 113.46911 * 217.87594 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.4747 1.4031 0.0000 4 6 3.9607 0.4692 0.0008 5 6 3.6943 -0.8315 0.0067 6 6 2.2791 -1.1198 0.0005 7 6 1.7290 -2.4849 0.0017 8 8 0.5246 -2.6553 0.0027 9 7 2.5597 -3.5462 0.0016 10 6 2.0121 -4.9051 0.0033 11 6 3.1594 -5.9173 0.0022 12 6 2.7088 -7.3794 0.1258 13 7 2.5812 -7.4097 -1.3390 14 6 1.8332 -8.1074 -2.2493 15 1 1.0523 -8.7721 -1.9104 16 6 2.0784 -7.9603 -3.6077 17 7 3.1086 -7.2510 -4.0173 18 14 0.9464 -8.7694 -4.8541 19 1 1.5102 -10.0834 -5.2551 20 1 -0.3943 -8.9700 -4.2481 21 1 0.8237 -7.8977 -6.0501 22 6 3.6152 -6.3655 -1.3962 23 1 -0.3633 0.0000 1.0277 24 1 -0.3633 0.8900 -0.5138 25 1 -0.3634 -0.8900 -0.5138 26 1 4.9538 0.8936 0.0006 27 1 4.4576 -1.5956 0.0119 28 1 3.5201 -3.4104 0.0004 29 1 1.3987 -5.0507 -0.8858 30 1 1.4007 -5.0492 0.8941 31 1 3.9763 -5.6433 0.6698 32 1 1.7589 -7.4983 0.6468 33 1 3.4848 -8.0429 0.5078 34 1 3.2803 -7.1485 -4.9666 35 1 4.6309 -6.7609 -1.4156 36 1 3.4375 -5.6206 -2.1719 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031652256.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:31 Heat of formation + Delta-G solvation = 26.558986 kcal Electronic energy + Delta-G solvation = -19176.118838 eV Core-core repulsion = 16173.834568 eV Total energy + Delta-G solvation = -3002.284271 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.09787 -39.93758 -37.83611 -35.77547 -34.23039 -32.81266 -30.61971 -28.72863 -27.14980 -26.34054 -24.79324 -23.79158 -22.53816 -20.93237 -19.86002 -18.70998 -18.21695 -17.60862 -17.04449 -16.81852 -16.43741 -15.94286 -15.70131 -15.10361 -14.69766 -14.57293 -14.39786 -14.26940 -13.93088 -13.59242 -13.37992 -13.03199 -12.99857 -12.77184 -12.58464 -12.55490 -12.29767 -11.96611 -11.83070 -11.61639 -11.09449 -10.89912 -10.74554 -10.12664 -9.69957 -9.34157 -8.91753 -7.94351 -5.24287 -0.17919 0.57023 0.98073 1.04130 1.42449 1.44613 1.53575 2.27432 2.38483 2.46222 3.29893 3.50978 3.63958 3.75017 3.88038 3.96447 4.19654 4.42320 4.52172 4.61668 4.64597 4.66548 4.78788 4.88860 4.96517 5.00437 5.06307 5.09736 5.23100 5.26666 5.32672 5.45349 5.50294 5.62286 5.92396 6.59485 6.90465 7.25460 7.59339 8.61039 9.24862 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.023492 B = 0.003772 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1191.627986 B = 7421.977528 C = 7697.321699 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.163 4.163 3 S 0.223 5.777 4 C -0.229 4.229 5 C -0.116 4.116 6 C -0.198 4.198 7 C 0.568 3.432 8 O -0.581 6.581 9 N -0.706 5.706 10 C 0.163 3.837 11 C -0.124 4.124 12 C 0.124 3.876 13 N -0.643 5.643 14 C -0.228 4.228 15 H 0.083 0.917 16 C -0.067 4.067 17 N -0.953 5.953 18 Si 0.974 3.026 19 H -0.283 1.283 20 H -0.269 1.269 21 H -0.295 1.295 22 C 0.162 3.838 23 H 0.083 0.917 24 H 0.087 0.913 25 H 0.073 0.927 26 H 0.201 0.799 27 H 0.167 0.833 28 H 0.413 0.587 29 H 0.033 0.967 30 H 0.070 0.930 31 H 0.121 0.879 32 H 0.051 0.949 33 H 0.056 0.944 34 H 0.248 0.752 35 H 0.025 0.975 36 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.494 18.803 11.905 22.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.284 4.284 3 S 0.489 5.511 4 C -0.364 4.364 5 C -0.145 4.145 6 C -0.215 4.215 7 C 0.356 3.644 8 O -0.464 6.464 9 N -0.358 5.358 10 C 0.039 3.961 11 C -0.143 4.143 12 C -0.002 4.002 13 N -0.369 5.369 14 C -0.357 4.357 15 H 0.100 0.900 16 C -0.260 4.260 17 N -0.602 5.602 18 Si 0.802 3.198 19 H -0.210 1.210 20 H -0.194 1.194 21 H -0.222 1.222 22 C 0.037 3.963 23 H 0.102 0.898 24 H 0.106 0.894 25 H 0.092 0.908 26 H 0.218 0.782 27 H 0.184 0.816 28 H 0.250 0.750 29 H 0.051 0.949 30 H 0.088 0.912 31 H 0.139 0.861 32 H 0.070 0.930 33 H 0.074 0.926 34 H 0.056 0.944 35 H 0.043 0.957 36 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 2.251 20.078 11.604 23.299 hybrid contribution 0.281 -2.447 -1.173 2.729 sum 2.532 17.630 10.430 20.641 Atomic orbital electron populations 1.20584 0.87096 1.03939 1.03650 1.24811 1.02415 0.98325 1.02828 1.82784 0.94177 1.05203 1.68967 1.25815 1.03609 0.96655 1.10273 1.21380 0.93447 0.97768 1.01859 1.20224 0.94518 0.92430 1.14301 1.18068 0.85790 0.84963 0.75585 1.90704 1.16250 1.86867 1.52544 1.45737 1.10620 1.05220 1.74190 1.20698 0.95131 0.79675 1.00581 1.23043 0.98133 0.94572 0.98567 1.22575 0.99028 0.93402 0.85147 1.46084 1.43558 1.44905 1.02382 1.19336 1.09827 1.19728 0.86775 0.89955 1.25604 0.99698 1.02022 0.98644 1.70006 1.30235 1.46149 1.13807 0.85125 0.78749 0.77426 0.78480 1.21028 1.19381 1.22195 1.22070 0.91087 0.89810 0.93370 0.89844 0.89443 0.90838 0.78224 0.81568 0.75030 0.94897 0.91207 0.86102 0.93032 0.92620 0.94361 0.95707 0.95543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.23 9.60 71.24 0.68 -1.55 16 2 C -0.16 -3.88 6.34 25.17 0.16 -3.72 16 3 S 0.22 3.49 22.97 -56.49 -1.30 2.19 16 4 C -0.23 -3.35 11.12 66.64 0.74 -2.61 16 5 C -0.12 -2.22 9.90 22.67 0.22 -1.99 16 6 C -0.20 -5.23 5.98 -19.87 -0.12 -5.35 16 7 C 0.57 19.05 7.79 86.59 0.67 19.72 16 8 O -0.58 -23.75 14.06 -4.15 -0.06 -23.81 16 9 N -0.71 -21.48 5.53 -466.59 -2.58 -24.06 16 10 C 0.16 5.84 5.52 86.38 0.48 6.32 16 11 C -0.12 -4.20 4.17 -10.37 -0.04 -4.25 16 12 C 0.12 4.81 8.25 83.18 0.69 5.50 16 13 N -0.64 -33.24 3.60 -737.95 -2.66 -35.90 16 14 C -0.23 -13.19 10.73 84.04 0.90 -12.29 16 15 H 0.08 4.57 7.84 -2.91 -0.02 4.55 16 16 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 17 N -0.95 -59.04 11.81 21.65 0.26 -58.79 16 18 Si 0.97 47.33 29.56 68.60 2.03 49.36 16 19 H -0.28 -13.38 7.11 99.48 0.71 -12.68 16 20 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 21 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 22 C 0.16 7.51 6.75 83.27 0.56 8.08 16 23 H 0.08 1.82 8.14 -2.39 -0.02 1.81 16 24 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.07 2.26 5.94 -2.39 -0.01 2.24 16 26 H 0.20 1.57 8.06 -2.91 -0.02 1.54 16 27 H 0.17 2.42 7.10 -2.91 -0.02 2.40 16 28 H 0.41 9.75 7.02 -92.71 -0.65 9.10 16 29 H 0.03 1.52 7.93 -2.39 -0.02 1.50 16 30 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 31 H 0.12 3.03 8.14 -2.39 -0.02 3.01 16 32 H 0.05 1.90 8.12 -2.39 -0.02 1.89 16 33 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 34 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 35 H 0.03 1.17 8.14 -2.38 -0.02 1.15 16 36 H 0.03 1.39 7.56 -2.39 -0.02 1.37 16 Total: -1.00 -75.76 317.23 1.55 -74.21 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: 0.45 Total: 12.39 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: 5.42 Total: 4.42 kcal Atomic # 7 Polarization: -113.76 SS G_CDS: -4.99 Total: -118.75 kcal Atomic # 8 Polarization: -23.75 SS G_CDS: -0.06 Total: -23.81 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 2.03 Total: 49.36 kcal Atomic # 16 Polarization: 3.49 SS G_CDS: -1.30 Total: 2.19 kcal Total: -75.76 1.55 -74.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031652256.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.770 kcal (2) G-P(sol) polarization free energy of solvation -75.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds