Wall clock time and date at job start Tue Mar 31 2020 01:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.33821 * 122.44957 * 2 1 4 4 S 1.70620 * 110.95368 * 179.78132 * 3 2 1 5 5 C 1.75832 * 91.56377 * 0.30816 * 4 3 2 6 6 C 1.46580 * 125.45962 * 179.97438 * 5 4 3 7 7 O 1.21700 * 120.00304 * 179.69568 * 6 5 4 8 8 N 1.34778 * 119.99795 * 359.69389 * 6 5 4 9 9 C 1.46501 * 120.00016 * 180.02562 * 8 6 5 10 10 C 1.53001 * 109.47379 * 179.97438 * 9 8 6 11 11 C 1.53495 * 114.20602 * 175.00131 * 10 9 8 12 12 N 1.47064 * 87.98647 * 87.71660 * 11 10 9 13 13 C 1.36929 * 136.05710 * 207.07951 * 12 11 10 14 14 H 1.08003 * 120.00152 * 6.50021 * 13 12 11 15 15 C 1.38818 * 120.00175 * 186.49548 * 13 12 11 16 16 N 1.31615 * 119.99847 * 6.43003 * 15 13 12 17 17 Si 1.86802 * 119.99925 * 186.42380 * 15 13 12 18 18 H 1.48502 * 109.46990 * 265.01960 * 17 15 13 19 19 H 1.48491 * 109.47236 * 25.02406 * 17 15 13 20 20 H 1.48506 * 109.46777 * 145.02360 * 17 15 13 21 21 C 1.47067 * 87.88549 * 27.33957 * 12 11 10 22 22 C 1.36653 * 109.08407 * 359.69812 * 5 4 3 23 23 H 1.09003 * 109.47434 * 269.97540 * 1 2 3 24 24 H 1.09004 * 109.47289 * 29.97563 * 1 2 3 25 25 H 1.09000 * 109.47185 * 149.97512 * 1 2 3 26 26 H 1.07992 * 124.52379 * 0.02562 * 3 2 1 27 27 H 0.96994 * 120.00340 * 359.97438 * 8 6 5 28 28 H 1.09001 * 109.46921 * 59.99536 * 9 8 6 29 29 H 1.08998 * 109.46807 * 300.00283 * 9 8 6 30 30 H 1.08998 * 113.27713 * 41.92709 * 10 9 8 31 31 H 1.08996 * 113.46596 * 332.93558 * 11 10 9 32 32 H 1.09007 * 113.51449 * 202.50808 * 11 10 9 33 33 H 0.97003 * 120.00226 * 179.97438 * 16 15 13 34 34 H 1.09005 * 113.46771 * 87.43754 * 21 12 11 35 35 H 1.09002 * 113.46911 * 217.87594 * 21 12 11 36 36 H 1.07997 * 123.34993 * 180.24985 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1293 0.0000 4 16 3.8970 0.7892 0.0061 5 6 3.5937 -0.9427 -0.0008 6 6 4.6231 -1.9863 -0.0003 7 8 4.3001 -3.1596 0.0002 8 7 5.9273 -1.6463 -0.0004 9 6 6.9561 -2.6892 -0.0004 10 6 8.3413 -2.0393 -0.0012 11 6 9.5035 -3.0345 0.1207 12 7 9.4800 -3.1616 -1.3442 13 6 9.8222 -4.1243 -2.2559 14 1 10.1216 -5.1056 -1.9185 15 6 9.7844 -3.8389 -3.6139 16 7 9.5432 -2.6110 -4.0219 17 14 10.0759 -5.1976 -4.8623 18 1 11.5056 -5.2026 -5.2638 19 1 9.7268 -6.5083 -4.2579 20 1 9.2268 -4.9619 -6.0577 21 6 8.9333 -1.7975 -1.3994 22 6 2.2446 -1.1601 -0.0005 23 1 -0.3634 -0.0004 1.0277 24 1 -0.3634 0.8902 -0.5135 25 1 -0.3633 -0.8898 -0.5142 26 1 1.8026 2.1231 0.0004 27 1 6.1847 -0.7111 -0.0012 28 1 6.8454 -3.3088 -0.8904 29 1 6.8455 -3.3087 0.8896 30 1 8.4150 -1.1817 0.6675 31 1 9.2348 -3.9540 0.6406 32 1 10.4210 -2.5869 0.5030 33 1 9.5171 -2.4115 -4.9708 34 1 9.7001 -1.0230 -1.4180 35 1 8.1789 -1.6632 -2.1746 36 1 1.8019 -2.1452 -0.0002 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001031657079.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:18:50 Heat of formation + Delta-G solvation = 26.427887 kcal Electronic energy + Delta-G solvation = -18891.944776 eV Core-core repulsion = 15889.654821 eV Total energy + Delta-G solvation = -3002.289955 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.02309 -39.93945 -38.89743 -35.77898 -34.23972 -32.14936 -30.40817 -28.77757 -27.90032 -26.36306 -25.26564 -24.00040 -21.82605 -20.63587 -19.93744 -19.17067 -18.66117 -17.42010 -17.01326 -16.89386 -16.51312 -16.03761 -15.70598 -15.17883 -14.82119 -14.61535 -14.44839 -14.10482 -14.05292 -13.44145 -13.15871 -13.00696 -12.91014 -12.79361 -12.75188 -12.59856 -12.31315 -11.86827 -11.84099 -11.64535 -11.30773 -11.03771 -10.85567 -10.26549 -9.81030 -9.33208 -8.91926 -7.94089 -5.24160 -0.50664 0.48804 0.94122 1.34835 1.42758 1.44960 1.53886 2.02577 2.14113 2.46330 3.29900 3.49314 3.60099 3.76726 3.93105 4.07805 4.20395 4.40325 4.49294 4.58295 4.70220 4.76580 4.86192 4.88244 4.90893 4.97533 5.05321 5.07173 5.22603 5.28889 5.40380 5.48827 5.49842 5.58559 5.92144 6.40357 6.90447 7.05961 7.59368 8.60811 9.24942 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.024487 B = 0.003702 C = 0.003558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1143.193547 B = 7562.431695 C = 7867.515915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.131 4.131 3 C -0.224 4.224 4 S 0.241 5.759 5 C -0.298 4.298 6 C 0.582 3.418 7 O -0.580 6.580 8 N -0.708 5.708 9 C 0.161 3.839 10 C -0.126 4.126 11 C 0.125 3.875 12 N -0.643 5.643 13 C -0.228 4.228 14 H 0.083 0.917 15 C -0.068 4.068 16 N -0.952 5.952 17 Si 0.975 3.025 18 H -0.284 1.284 19 H -0.269 1.269 20 H -0.295 1.295 21 C 0.162 3.838 22 C -0.059 4.059 23 H 0.080 0.920 24 H 0.083 0.917 25 H 0.067 0.933 26 H 0.201 0.799 27 H 0.409 0.591 28 H 0.037 0.963 29 H 0.075 0.925 30 H 0.122 0.878 31 H 0.053 0.947 32 H 0.057 0.943 33 H 0.247 0.753 34 H 0.027 0.973 35 H 0.026 0.974 36 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.621 12.022 11.926 23.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.143 4.143 3 C -0.361 4.361 4 S 0.510 5.490 5 C -0.418 4.418 6 C 0.370 3.630 7 O -0.462 6.462 8 N -0.359 5.359 9 C 0.038 3.962 10 C -0.146 4.146 11 C 0.000 4.000 12 N -0.370 5.370 13 C -0.356 4.356 14 H 0.101 0.899 15 C -0.261 4.261 16 N -0.601 5.601 17 Si 0.803 3.197 18 H -0.211 1.211 19 H -0.194 1.194 20 H -0.222 1.222 21 C 0.036 3.964 22 C -0.094 4.094 23 H 0.099 0.901 24 H 0.102 0.898 25 H 0.086 0.914 26 H 0.218 0.782 27 H 0.246 0.754 28 H 0.055 0.945 29 H 0.093 0.907 30 H 0.139 0.861 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.056 0.944 34 H 0.044 0.956 35 H 0.045 0.955 36 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -14.405 11.956 11.632 22.040 hybrid contribution -0.617 -1.275 -1.189 1.850 sum -15.022 10.681 10.443 21.185 Atomic orbital electron populations 1.20568 0.87429 1.03732 1.03314 1.18981 0.99379 0.90770 1.05216 1.25598 0.98039 1.04531 1.07970 1.82853 1.04533 0.94944 1.66643 1.24497 0.97653 0.98792 1.20858 1.17391 0.82379 0.87519 0.75681 1.90791 1.82432 1.20404 1.52586 1.45762 1.04913 1.10938 1.74292 1.20784 0.85093 0.89341 1.01031 1.23062 0.92710 1.00044 0.98766 1.22565 0.95400 0.96895 0.85143 1.46089 1.74952 1.13518 1.02394 1.19330 1.38074 0.91505 0.86725 0.89916 1.25617 1.03034 0.98732 0.98686 1.70005 1.57000 1.19227 1.13854 0.85116 0.77271 0.78853 0.78476 1.21060 1.19406 1.22203 1.22073 0.94235 0.86802 0.93242 1.20854 0.91049 1.00757 0.96749 0.90121 0.89805 0.91386 0.78187 0.75410 0.94492 0.90732 0.86068 0.92907 0.92491 0.94368 0.95564 0.95531 0.83912 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.08 10.13 71.23 0.72 -0.36 16 2 C -0.13 -2.33 5.78 -21.05 -0.12 -2.45 16 3 C -0.22 -3.32 10.67 66.82 0.71 -2.61 16 4 S 0.24 4.33 22.16 -56.49 -1.25 3.08 16 5 C -0.30 -7.99 6.45 24.08 0.16 -7.83 16 6 C 0.58 19.98 7.78 86.42 0.67 20.65 16 7 O -0.58 -24.77 16.84 -4.35 -0.07 -24.84 16 8 N -0.71 -22.06 5.55 -467.17 -2.59 -24.66 16 9 C 0.16 5.80 5.52 86.38 0.48 6.28 16 10 C -0.13 -4.30 4.17 -10.37 -0.04 -4.35 16 11 C 0.13 4.84 8.25 83.18 0.69 5.53 16 12 N -0.64 -33.16 3.60 -737.95 -2.66 -35.82 16 13 C -0.23 -13.13 10.73 84.04 0.90 -12.23 16 14 H 0.08 4.58 7.84 -2.91 -0.02 4.55 16 15 C -0.07 -3.97 5.50 84.86 0.47 -3.50 16 16 N -0.95 -58.81 11.81 21.65 0.26 -58.56 16 17 Si 0.97 47.31 29.56 68.60 2.03 49.33 16 18 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 19 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 20 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 21 C 0.16 7.50 6.75 83.27 0.56 8.06 16 22 C -0.06 -1.45 9.80 21.72 0.21 -1.23 16 23 H 0.08 0.78 8.14 -2.39 -0.02 0.77 16 24 H 0.08 0.70 8.12 -2.38 -0.02 0.68 16 25 H 0.07 0.82 8.13 -2.39 -0.02 0.80 16 26 H 0.20 1.59 8.06 -2.91 -0.02 1.57 16 27 H 0.41 10.24 7.59 -92.71 -0.70 9.53 16 28 H 0.04 1.70 7.93 -2.39 -0.02 1.68 16 29 H 0.07 2.55 8.14 -2.39 -0.02 2.53 16 30 H 0.12 3.05 8.14 -2.39 -0.02 3.03 16 31 H 0.05 1.93 8.12 -2.39 -0.02 1.91 16 32 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 33 H 0.25 14.88 8.31 -92.71 -0.77 14.10 16 34 H 0.03 1.23 8.14 -2.38 -0.02 1.21 16 35 H 0.03 1.39 7.56 -2.39 -0.02 1.38 16 36 H 0.14 3.61 8.06 -2.91 -0.02 3.58 16 Total: -1.00 -75.86 322.78 1.49 -74.36 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: 0.38 Total: 11.14 kcal Atomic # 6 Polarization: 0.55 SS G_CDS: 5.40 Total: 5.96 kcal Atomic # 7 Polarization: -114.03 SS G_CDS: -5.00 Total: -119.03 kcal Atomic # 8 Polarization: -24.77 SS G_CDS: -0.07 Total: -24.84 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 2.03 Total: 49.33 kcal Atomic # 16 Polarization: 4.33 SS G_CDS: -1.25 Total: 3.08 kcal Total: -75.86 1.49 -74.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031657079.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.793 kcal (2) G-P(sol) polarization free energy of solvation -75.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.365 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds