Wall clock time and date at job start Tue Mar 31 2020 01:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37475 * 123.34781 * 2 1 4 4 C 1.33823 * 115.09701 * 180.02562 * 3 2 1 5 5 S 1.70609 * 110.95654 * 359.97438 * 4 3 2 6 6 C 1.36646 * 123.35229 * 180.02562 * 2 1 3 7 7 C 1.46575 * 125.45981 * 359.94908 * 6 2 1 8 8 O 1.21702 * 120.00025 * 359.97438 * 7 6 2 9 9 N 1.34779 * 120.00239 * 179.97438 * 7 6 2 10 10 C 1.46503 * 120.00086 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.47098 * 180.02562 * 10 9 7 12 12 H 1.09005 * 112.96320 * 306.68065 * 11 10 9 13 13 C 1.53937 * 113.76880 * 175.00593 * 11 10 9 14 14 C 1.53949 * 86.28965 * 222.09119 * 13 11 10 15 15 N 1.47578 * 86.11622 * 23.60516 * 14 13 11 16 16 C 1.36932 * 134.49656 * 155.35785 * 15 14 13 17 17 H 1.08004 * 120.00806 * 179.97438 * 16 15 14 18 18 C 1.38817 * 119.99926 * 0.02562 * 16 15 14 19 19 N 1.31623 * 119.99847 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00248 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47069 * 89.99858 * 20 18 16 22 22 H 1.48496 * 109.46902 * 209.99750 * 20 18 16 23 23 H 1.48502 * 109.47239 * 329.99770 * 20 18 16 24 24 H 1.09000 * 109.47315 * 89.97866 * 1 2 3 25 25 H 1.09001 * 109.47371 * 209.97841 * 1 2 3 26 26 H 1.09002 * 109.47714 * 329.97657 * 1 2 3 27 27 H 1.07995 * 122.45133 * 359.76127 * 3 2 1 28 28 H 1.07997 * 124.52024 * 179.97438 * 4 3 2 29 29 H 0.97001 * 119.99916 * 0.02562 * 9 7 6 30 30 H 1.08996 * 109.47155 * 300.00377 * 10 9 7 31 31 H 1.09009 * 109.46723 * 60.00237 * 10 9 7 32 32 H 1.09004 * 113.74332 * 336.43004 * 13 11 10 33 33 H 1.09002 * 113.74735 * 107.64151 * 13 11 10 34 34 H 1.08998 * 113.77029 * 137.90816 * 14 13 11 35 35 H 1.09001 * 113.77002 * 269.19274 * 14 13 11 36 36 H 0.97002 * 120.00132 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2627 1.1484 0.0000 4 6 3.5871 0.9563 -0.0005 5 16 3.9623 -0.7080 -0.0004 6 6 2.2582 -1.1414 -0.0005 7 6 1.7285 -2.5081 -0.0001 8 8 0.5258 -2.6945 0.0013 9 7 2.5732 -3.5583 -0.0012 10 6 2.0436 -4.9243 -0.0001 11 6 3.2043 -5.9212 -0.0011 12 1 3.9166 -5.7438 -0.8069 13 6 2.7606 -7.3901 0.1225 14 6 3.9385 -7.5593 1.0992 15 7 3.8323 -6.1042 1.3218 16 6 4.1776 -5.2621 2.3448 17 1 3.9881 -4.2023 2.2594 18 6 4.7723 -5.7705 3.4915 19 7 5.0038 -7.0620 3.5956 20 14 5.2441 -4.6217 4.8869 21 1 4.1056 -4.4974 5.8321 22 1 6.4239 -5.1706 5.6025 23 1 5.5779 -3.2839 4.3354 24 1 -0.3634 0.0004 -1.0277 25 1 -0.3634 -0.8902 0.5135 26 1 -0.3634 0.8898 0.5142 27 1 1.8200 2.1334 -0.0038 28 1 4.3204 1.7491 -0.0010 29 1 3.5317 -3.4097 -0.0019 30 1 1.4345 -5.0772 0.8907 31 1 1.4319 -5.0774 -0.8893 32 1 1.7830 -7.5156 0.5881 33 1 2.8681 -7.9602 -0.8003 34 1 3.6979 -8.1569 1.9784 35 1 4.8676 -7.8653 0.6182 36 1 5.4191 -7.4174 4.3970 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038009951.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:19:05 Heat of formation + Delta-G solvation = 47.019532 kcal Electronic energy + Delta-G solvation = -19510.042864 eV Core-core repulsion = 16508.645829 eV Total energy + Delta-G solvation = -3001.397035 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.64768 -38.21435 -37.45784 -34.10050 -32.19166 -30.92639 -29.05292 -27.90905 -26.86301 -23.61070 -23.37046 -22.36110 -20.93148 -19.38895 -18.64937 -18.05437 -16.66228 -15.83537 -15.50609 -15.34597 -14.91657 -14.72662 -14.02683 -13.64962 -13.62171 -13.21532 -13.14072 -12.82444 -12.33622 -12.12694 -11.87127 -11.73941 -11.43057 -11.12344 -11.01866 -10.84964 -10.75331 -10.53526 -10.01486 -9.76631 -9.66883 -9.37256 -8.91243 -8.80302 -8.54460 -8.43925 -6.90079 -5.76915 -3.09425 0.55128 1.50867 1.90456 2.38787 3.37811 3.39677 3.43480 3.44700 3.52286 4.42883 4.81467 4.97579 5.14244 5.19456 5.30440 5.39196 5.53724 5.60843 5.71069 5.75376 5.89898 5.90672 6.00642 6.06854 6.28549 6.34531 6.39210 6.51753 6.61432 6.70092 6.85060 7.24381 7.40270 7.59044 7.81313 7.98132 8.46570 9.04028 9.70730 10.58683 11.39746 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.016582 B = 0.005766 C = 0.004773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.191976 B = 4854.960906 C = 5864.388739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.030 4.030 3 C -0.149 4.149 4 C -0.235 4.235 5 S 0.206 5.794 6 C -0.266 4.266 7 C 0.587 3.413 8 O -0.537 6.537 9 N -0.709 5.709 10 C 0.124 3.876 11 C 0.124 3.876 12 H 0.050 0.950 13 C -0.155 4.155 14 C 0.159 3.841 15 N -0.602 5.602 16 C -0.219 4.219 17 H 0.078 0.922 18 C -0.006 4.006 19 N -0.919 5.919 20 Si 0.905 3.095 21 H -0.288 1.288 22 H -0.290 1.290 23 H -0.281 1.281 24 H 0.072 0.928 25 H 0.094 0.906 26 H 0.062 0.938 27 H 0.142 0.858 28 H 0.167 0.833 29 H 0.400 0.600 30 H 0.075 0.925 31 H 0.063 0.937 32 H 0.077 0.923 33 H 0.054 0.946 34 H 0.074 0.926 35 H 0.027 0.973 36 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.584 12.068 -9.755 15.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.045 4.045 3 C -0.181 4.181 4 C -0.373 4.373 5 S 0.475 5.525 6 C -0.386 4.386 7 C 0.373 3.627 8 O -0.417 6.417 9 N -0.359 5.359 10 C 0.000 4.000 11 C 0.017 3.983 12 H 0.067 0.933 13 C -0.194 4.194 14 C 0.034 3.966 15 N -0.328 5.328 16 C -0.347 4.347 17 H 0.095 0.905 18 C -0.203 4.203 19 N -0.566 5.566 20 Si 0.735 3.265 21 H -0.216 1.216 22 H -0.216 1.216 23 H -0.206 1.206 24 H 0.091 0.909 25 H 0.112 0.888 26 H 0.081 0.919 27 H 0.160 0.840 28 H 0.184 0.816 29 H 0.234 0.766 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.095 0.905 33 H 0.072 0.928 34 H 0.092 0.908 35 H 0.044 0.956 36 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.881 11.143 -9.423 14.875 hybrid contribution -0.190 1.761 0.860 1.969 sum -3.072 12.904 -8.563 15.788 Atomic orbital electron populations 1.20707 0.88809 1.03837 1.02797 1.19497 0.97827 0.90377 0.96782 1.19890 0.92569 0.99521 1.06118 1.25261 1.00656 1.02094 1.09311 1.83296 1.04156 0.97748 1.67340 1.24560 0.97194 0.97743 1.19137 1.16901 0.86242 0.82823 0.76774 1.90736 1.14338 1.85340 1.51268 1.45872 1.09737 1.06398 1.73885 1.21813 0.97232 0.79301 1.01650 1.22519 0.92326 0.93228 0.90258 0.93299 1.23769 1.00922 0.95101 0.99588 1.22196 0.92377 0.86749 0.95302 1.46069 1.70863 1.04141 1.11764 1.18932 1.33425 0.89532 0.92819 0.90451 1.24745 1.01286 0.96066 0.98157 1.69817 1.48104 1.10633 1.28071 0.86227 0.77871 0.79795 0.82562 1.21553 1.21636 1.20626 0.90934 0.88760 0.91939 0.84035 0.81568 0.76599 0.90691 0.91892 0.90462 0.92762 0.90797 0.95554 0.93691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.30 9.55 36.00 0.34 -0.96 16 2 C -0.03 -0.41 5.90 -105.48 -0.62 -1.03 16 3 C -0.15 -1.69 9.97 -41.41 -0.41 -2.11 16 4 C -0.24 -2.55 10.92 29.18 0.32 -2.23 16 5 S 0.21 2.65 22.16 -107.50 -2.38 0.26 16 6 C -0.27 -4.11 6.45 -36.80 -0.24 -4.35 16 7 C 0.59 10.53 7.78 -12.90 -0.10 10.43 16 8 O -0.54 -10.71 14.24 5.19 0.07 -10.64 16 9 N -0.71 -12.59 5.52 -61.65 -0.34 -12.93 16 10 C 0.12 2.27 5.54 -4.04 -0.02 2.25 16 11 C 0.12 2.39 4.33 -66.87 -0.29 2.10 16 12 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 13 C -0.15 -2.81 7.86 -25.81 -0.20 -3.01 16 14 C 0.16 3.63 7.51 -2.98 -0.02 3.61 16 15 N -0.60 -14.66 3.57 -170.76 -0.61 -15.27 16 16 C -0.22 -5.92 10.51 -15.06 -0.16 -6.07 16 17 H 0.08 2.02 7.80 -52.48 -0.41 1.61 16 18 C -0.01 -0.17 5.50 -17.43 -0.10 -0.26 16 19 N -0.92 -26.93 11.38 55.49 0.63 -26.29 16 20 Si 0.91 22.12 29.55 -169.99 -5.02 17.10 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 22 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 25 H 0.09 1.43 6.01 -51.93 -0.31 1.11 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.14 1.24 8.06 -52.49 -0.42 0.81 16 28 H 0.17 1.32 8.06 -52.49 -0.42 0.90 16 29 H 0.40 6.85 7.59 -40.82 -0.31 6.54 16 30 H 0.07 1.56 8.14 -51.93 -0.42 1.13 16 31 H 0.06 1.04 8.14 -51.92 -0.42 0.62 16 32 H 0.08 1.38 8.10 -51.93 -0.42 0.96 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.07 1.88 7.15 -51.93 -0.37 1.51 16 35 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 LS Contribution 317.66 15.07 4.79 4.79 Total: -1.00 -31.37 317.66 -9.13 -40.50 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -4.76 Total: 4.12 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: -1.50 Total: -1.63 kcal Atomic # 7 Polarization: -54.18 SS G_CDS: -0.32 Total: -54.50 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.07 Total: -10.64 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Atomic # 16 Polarization: 2.65 SS G_CDS: -2.38 Total: 0.26 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.37 -9.13 -40.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038009951.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.517 kcal (2) G-P(sol) polarization free energy of solvation -31.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.149 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds