Wall clock time and date at job start Tue Mar 31 2020 01:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37475 * 123.34781 * 2 1 4 4 C 1.33823 * 115.09701 * 180.02562 * 3 2 1 5 5 S 1.70609 * 110.95654 * 359.97438 * 4 3 2 6 6 C 1.36646 * 123.35229 * 180.02562 * 2 1 3 7 7 C 1.46575 * 125.45981 * 359.94908 * 6 2 1 8 8 O 1.21702 * 120.00025 * 359.97438 * 7 6 2 9 9 N 1.34779 * 120.00239 * 179.97438 * 7 6 2 10 10 C 1.46503 * 120.00086 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.47098 * 180.02562 * 10 9 7 12 12 H 1.09005 * 112.96320 * 306.68065 * 11 10 9 13 13 C 1.53937 * 113.76880 * 175.00593 * 11 10 9 14 14 C 1.53949 * 86.28965 * 222.09119 * 13 11 10 15 15 N 1.47578 * 86.11622 * 23.60516 * 14 13 11 16 16 C 1.36932 * 134.49656 * 155.35785 * 15 14 13 17 17 H 1.08004 * 120.00806 * 179.97438 * 16 15 14 18 18 C 1.38817 * 119.99926 * 0.02562 * 16 15 14 19 19 N 1.31623 * 119.99847 * 359.97438 * 18 16 15 20 20 Si 1.86799 * 120.00248 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47069 * 89.99858 * 20 18 16 22 22 H 1.48496 * 109.46902 * 209.99750 * 20 18 16 23 23 H 1.48502 * 109.47239 * 329.99770 * 20 18 16 24 24 H 1.09000 * 109.47315 * 89.97866 * 1 2 3 25 25 H 1.09001 * 109.47371 * 209.97841 * 1 2 3 26 26 H 1.09002 * 109.47714 * 329.97657 * 1 2 3 27 27 H 1.07995 * 122.45133 * 359.76127 * 3 2 1 28 28 H 1.07997 * 124.52024 * 179.97438 * 4 3 2 29 29 H 0.97001 * 119.99916 * 0.02562 * 9 7 6 30 30 H 1.08996 * 109.47155 * 300.00377 * 10 9 7 31 31 H 1.09009 * 109.46723 * 60.00237 * 10 9 7 32 32 H 1.09004 * 113.74332 * 336.43004 * 13 11 10 33 33 H 1.09002 * 113.74735 * 107.64151 * 13 11 10 34 34 H 1.08998 * 113.77029 * 137.90816 * 14 13 11 35 35 H 1.09001 * 113.77002 * 269.19274 * 14 13 11 36 36 H 0.97002 * 120.00132 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2627 1.1484 0.0000 4 6 3.5871 0.9563 -0.0005 5 16 3.9623 -0.7080 -0.0004 6 6 2.2582 -1.1414 -0.0005 7 6 1.7285 -2.5081 -0.0001 8 8 0.5258 -2.6945 0.0013 9 7 2.5732 -3.5583 -0.0012 10 6 2.0436 -4.9243 -0.0001 11 6 3.2043 -5.9212 -0.0011 12 1 3.9166 -5.7438 -0.8069 13 6 2.7606 -7.3901 0.1225 14 6 3.9385 -7.5593 1.0992 15 7 3.8323 -6.1042 1.3218 16 6 4.1776 -5.2621 2.3448 17 1 3.9881 -4.2023 2.2594 18 6 4.7723 -5.7705 3.4915 19 7 5.0038 -7.0620 3.5956 20 14 5.2441 -4.6217 4.8869 21 1 4.1056 -4.4974 5.8321 22 1 6.4239 -5.1706 5.6025 23 1 5.5779 -3.2839 4.3354 24 1 -0.3634 0.0004 -1.0277 25 1 -0.3634 -0.8902 0.5135 26 1 -0.3634 0.8898 0.5142 27 1 1.8200 2.1334 -0.0038 28 1 4.3204 1.7491 -0.0010 29 1 3.5317 -3.4097 -0.0019 30 1 1.4345 -5.0772 0.8907 31 1 1.4319 -5.0774 -0.8893 32 1 1.7830 -7.5156 0.5881 33 1 2.8681 -7.9602 -0.8003 34 1 3.6979 -8.1569 1.9784 35 1 4.8676 -7.8653 0.6182 36 1 5.4191 -7.4174 4.3970 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038009951.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:19:05 Heat of formation + Delta-G solvation = 26.838676 kcal Electronic energy + Delta-G solvation = -19510.917972 eV Core-core repulsion = 16508.645829 eV Total energy + Delta-G solvation = -3002.272142 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.97749 -39.72873 -38.66277 -35.57547 -34.21198 -31.91395 -30.37928 -29.81100 -28.18294 -25.29355 -24.66634 -23.79374 -22.25218 -21.00593 -20.01734 -19.13740 -18.44944 -17.11917 -17.05645 -16.81333 -16.32021 -16.01528 -15.70274 -15.21602 -14.96348 -14.60462 -14.40625 -14.03638 -13.58655 -13.30790 -13.28204 -13.04243 -12.94972 -12.71882 -12.69433 -12.61092 -12.27901 -11.85573 -11.80796 -11.52900 -11.36262 -10.90078 -10.82675 -10.19928 -9.72718 -9.41812 -8.88444 -7.87054 -5.18552 -0.47516 0.51259 0.96072 1.40799 1.42417 1.44230 1.51488 2.09197 2.20861 2.47178 3.32466 3.38372 3.79322 3.97295 3.99417 4.11118 4.26054 4.33794 4.40558 4.61297 4.66442 4.71391 4.79666 4.86904 4.99029 5.06418 5.07030 5.09480 5.33134 5.35343 5.40255 5.54941 5.61683 5.74779 5.98613 6.44191 6.95961 7.10632 7.65270 8.59988 9.29621 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.016582 B = 0.005766 C = 0.004773 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.191976 B = 4854.960906 C = 5864.388739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.026 4.026 3 C -0.156 4.156 4 C -0.212 4.212 5 S 0.199 5.801 6 C -0.310 4.310 7 C 0.583 3.417 8 O -0.567 6.567 9 N -0.712 5.712 10 C 0.133 3.867 11 C 0.130 3.870 12 H 0.071 0.929 13 C -0.129 4.129 14 C 0.150 3.850 15 N -0.629 5.629 16 C -0.213 4.213 17 H 0.080 0.920 18 C -0.068 4.068 19 N -0.952 5.952 20 Si 0.961 3.039 21 H -0.294 1.294 22 H -0.294 1.294 23 H -0.266 1.266 24 H 0.080 0.920 25 H 0.064 0.936 26 H 0.089 0.911 27 H 0.174 0.826 28 H 0.202 0.798 29 H 0.402 0.598 30 H 0.045 0.955 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.096 0.904 34 H 0.039 0.961 35 H 0.023 0.977 36 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.491 14.610 -11.110 18.683 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.042 4.042 3 C -0.187 4.187 4 C -0.350 4.350 5 S 0.468 5.532 6 C -0.430 4.430 7 C 0.371 3.629 8 O -0.449 6.449 9 N -0.361 5.361 10 C 0.009 3.991 11 C 0.024 3.976 12 H 0.088 0.912 13 C -0.167 4.167 14 C 0.025 3.975 15 N -0.356 5.356 16 C -0.342 4.342 17 H 0.098 0.902 18 C -0.261 4.261 19 N -0.602 5.602 20 Si 0.790 3.210 21 H -0.221 1.221 22 H -0.221 1.221 23 H -0.190 1.190 24 H 0.099 0.901 25 H 0.083 0.917 26 H 0.108 0.892 27 H 0.192 0.808 28 H 0.219 0.781 29 H 0.237 0.763 30 H 0.063 0.937 31 H 0.103 0.897 32 H 0.097 0.903 33 H 0.114 0.886 34 H 0.058 0.942 35 H 0.041 0.959 36 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -2.790 13.705 -10.816 17.681 hybrid contribution -0.249 1.054 1.204 1.619 sum -3.039 14.759 -9.612 17.874 Atomic orbital electron populations 1.20704 0.88480 1.03661 1.03228 1.19885 0.98434 0.90833 0.95096 1.20156 0.92570 0.99990 1.05964 1.25714 1.01299 1.01476 1.06495 1.83293 1.02570 0.99704 1.67644 1.24425 0.98985 0.96784 1.22816 1.17289 0.85884 0.83857 0.75874 1.90711 1.15467 1.86048 1.52714 1.45863 1.09891 1.06235 1.74101 1.21614 0.96591 0.79698 1.01215 1.22695 0.92359 0.94294 0.88263 0.91209 1.23558 0.98793 0.94515 0.99850 1.22173 0.94268 0.85738 0.95320 1.46415 1.71045 1.04749 1.13366 1.19246 1.31378 0.90086 0.93468 0.90182 1.25474 1.02658 0.97354 1.00597 1.69992 1.49825 1.12095 1.28308 0.85325 0.76972 0.78819 0.79847 1.22141 1.22072 1.19026 0.90137 0.91743 0.89197 0.80822 0.78067 0.76321 0.93676 0.89734 0.90304 0.88601 0.94244 0.95878 0.94543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.44 9.55 71.23 0.68 -1.76 16 2 C -0.03 -0.67 5.90 -20.42 -0.12 -0.80 16 3 C -0.16 -2.98 9.97 21.09 0.21 -2.77 16 4 C -0.21 -3.79 10.92 66.82 0.73 -3.06 16 5 S 0.20 4.75 22.16 -56.49 -1.25 3.50 16 6 C -0.31 -9.32 6.45 24.07 0.16 -9.17 16 7 C 0.58 20.99 7.78 86.42 0.67 21.67 16 8 O -0.57 -23.03 14.24 -4.35 -0.06 -23.09 16 9 N -0.71 -25.07 5.52 -467.16 -2.58 -27.65 16 10 C 0.13 4.80 5.54 86.38 0.48 5.27 16 11 C 0.13 4.83 4.33 45.09 0.20 5.03 16 12 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 13 C -0.13 -4.44 7.86 31.25 0.25 -4.20 16 14 C 0.15 6.91 7.51 86.48 0.65 7.56 16 15 N -0.63 -30.73 3.57 -694.16 -2.48 -33.22 16 16 C -0.21 -11.59 10.51 84.04 0.88 -10.71 16 17 H 0.08 4.20 7.80 -2.91 -0.02 4.18 16 18 C -0.07 -3.87 5.50 84.86 0.47 -3.41 16 19 N -0.95 -57.47 11.38 21.65 0.25 -57.23 16 20 Si 0.96 46.13 29.55 68.60 2.03 48.16 16 21 H -0.29 -14.22 7.11 99.48 0.71 -13.51 16 22 H -0.29 -14.18 7.11 99.48 0.71 -13.47 16 23 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 24 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 25 H 0.06 1.96 6.01 -2.39 -0.01 1.95 16 26 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.17 2.18 8.06 -2.91 -0.02 2.15 16 28 H 0.20 2.14 8.06 -2.91 -0.02 2.12 16 29 H 0.40 13.61 7.59 -92.71 -0.70 12.91 16 30 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.08 2.68 8.14 -2.38 -0.02 2.66 16 32 H 0.08 2.72 8.10 -2.38 -0.02 2.70 16 33 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 34 H 0.04 2.07 7.15 -2.39 -0.02 2.05 16 35 H 0.02 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.25 14.53 8.31 -92.71 -0.77 13.76 16 Total: -1.00 -69.91 317.66 1.54 -68.38 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: 0.39 Total: 17.49 kcal Atomic # 6 Polarization: -1.58 SS G_CDS: 5.25 Total: 3.66 kcal Atomic # 7 Polarization: -113.28 SS G_CDS: -4.82 Total: -118.10 kcal Atomic # 8 Polarization: -23.03 SS G_CDS: -0.06 Total: -23.09 kcal Atomic # 14 Polarization: 46.13 SS G_CDS: 2.03 Total: 48.16 kcal Atomic # 16 Polarization: 4.75 SS G_CDS: -1.25 Total: 3.50 kcal Total: -69.91 1.54 -68.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038009951.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.216 kcal (2) G-P(sol) polarization free energy of solvation -69.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.378 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds