Wall clock time and date at job start Tue Mar 31 2020 01:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.33812 * 124.52571 * 2 1 4 4 C 1.37472 * 115.10656 * 179.77227 * 3 2 1 5 5 C 1.36648 * 113.29275 * 0.45093 * 4 3 2 6 6 C 1.46591 * 125.45759 * 179.84016 * 5 4 3 7 7 O 1.21701 * 119.99910 * 359.72123 * 6 5 4 8 8 N 1.34771 * 119.99644 * 179.72222 * 6 5 4 9 9 C 1.46505 * 119.99622 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 8 6 11 11 H 1.09007 * 112.96750 * 53.32018 * 10 9 8 12 12 C 1.53946 * 113.77378 * 184.99939 * 10 9 8 13 13 C 1.53945 * 86.29134 * 137.90550 * 12 10 9 14 14 N 1.47581 * 86.11961 * 336.39637 * 13 12 10 15 15 C 1.36929 * 134.49167 * 204.63911 * 14 13 12 16 16 H 1.08003 * 120.00188 * 179.97438 * 15 14 13 17 17 C 1.38813 * 120.00102 * 0.02562 * 15 14 13 18 18 N 1.31623 * 119.99809 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99971 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47396 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47369 * 119.99643 * 19 17 15 22 22 H 1.48500 * 109.47186 * 239.99558 * 19 17 15 23 23 S 1.70624 * 124.52426 * 180.02562 * 2 1 3 24 24 H 1.08998 * 109.46969 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47025 * 300.00131 * 1 2 3 26 26 H 1.08997 * 109.46895 * 59.99979 * 1 2 3 27 27 H 1.08002 * 122.44957 * 0.04091 * 3 2 1 28 28 H 1.08005 * 123.35804 * 180.27291 * 4 3 2 29 29 H 0.96996 * 120.00772 * 359.97438 * 8 6 5 30 30 H 1.09002 * 109.47068 * 299.99729 * 9 8 6 31 31 H 1.09001 * 109.47372 * 59.99816 * 9 8 6 32 32 H 1.09003 * 113.74151 * 252.25618 * 12 10 9 33 33 H 1.09006 * 113.73813 * 23.45283 * 12 10 9 34 34 H 1.08999 * 113.76275 * 90.69660 * 13 12 10 35 35 H 1.08993 * 113.76995 * 221.97658 * 13 12 10 36 36 H 0.96998 * 119.99367 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2654 1.1024 0.0000 4 6 3.6216 0.8775 0.0049 5 6 3.9492 -0.4491 -0.0009 6 6 5.3124 -0.9884 -0.0010 7 8 6.2659 -0.2321 -0.0007 8 7 5.5096 -2.3216 -0.0014 9 6 6.8719 -2.8605 -0.0009 10 6 6.8155 -4.3894 -0.0009 11 1 6.2010 -4.7924 -0.8060 12 6 8.1952 -5.0613 0.1224 13 6 7.5200 -6.0401 1.1001 14 7 6.5242 -4.9739 1.3226 15 6 5.6721 -4.6551 2.3459 16 1 5.0234 -3.7958 2.2607 17 6 5.6429 -5.4356 3.4935 18 7 6.4338 -6.4825 3.5976 19 14 4.4800 -5.0010 4.8893 20 1 3.7031 -3.7884 4.5270 21 1 3.5488 -6.1327 5.1284 22 1 5.2639 -4.7360 6.1223 23 16 2.4740 -1.4057 -0.0006 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8429 2.0964 0.0007 28 1 4.3551 1.6702 0.0099 29 1 4.7496 -2.9243 -0.0013 30 1 7.3992 -2.5160 -0.8905 31 1 7.3984 -2.5167 0.8895 32 1 8.5393 -5.5295 -0.7999 33 1 8.9519 -4.4279 0.5854 34 1 7.1118 -6.9292 0.6195 35 1 8.1235 -6.2704 1.9780 36 1 6.4131 -7.0281 4.3994 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038016044.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:52 Heat of formation + Delta-G solvation = 44.622145 kcal Electronic energy + Delta-G solvation = -19281.124630 eV Core-core repulsion = 16279.623636 eV Total energy + Delta-G solvation = -3001.500993 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -39.50511 -38.12770 -37.50161 -34.08893 -32.25051 -32.07600 -28.63511 -27.87910 -26.55494 -23.65174 -23.37413 -22.35091 -20.96800 -19.49984 -18.88084 -17.84839 -16.63132 -16.17234 -15.42857 -15.33424 -14.86317 -14.68349 -14.11544 -13.91711 -13.67256 -13.35371 -13.15071 -12.97016 -12.45255 -12.19588 -11.90359 -11.80076 -11.43926 -11.12904 -11.03148 -10.91123 -10.75101 -10.53450 -10.06593 -9.78754 -9.73436 -9.40681 -8.81893 -8.80170 -8.62279 -8.50364 -6.90259 -5.77250 -3.09711 0.52453 1.44789 1.86523 2.39363 3.37048 3.40383 3.43717 3.45405 3.51628 4.42501 4.63088 4.97273 5.02026 5.15090 5.26399 5.27088 5.38876 5.48664 5.60507 5.68307 5.70304 5.90419 5.93792 6.05657 6.13652 6.30951 6.33063 6.39582 6.60959 6.68145 6.83146 7.24332 7.40109 7.59017 7.79761 7.97802 8.44703 9.03855 9.70449 10.58365 11.39492 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.015849 B = 0.005647 C = 0.004565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.253470 B = 4956.997093 C = 6132.689492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C -0.204 4.204 3 C -0.158 4.158 4 C -0.059 4.059 5 C -0.261 4.261 6 C 0.586 3.414 7 O -0.541 6.541 8 N -0.709 5.709 9 C 0.124 3.876 10 C 0.124 3.876 11 H 0.050 0.950 12 C -0.155 4.155 13 C 0.159 3.841 14 N -0.602 5.602 15 C -0.219 4.219 16 H 0.078 0.922 17 C -0.006 4.006 18 N -0.919 5.919 19 Si 0.905 3.095 20 H -0.279 1.279 21 H -0.290 1.290 22 H -0.290 1.290 23 S 0.212 5.788 24 H 0.068 0.932 25 H 0.078 0.922 26 H 0.077 0.923 27 H 0.142 0.858 28 H 0.151 0.849 29 H 0.400 0.600 30 H 0.063 0.937 31 H 0.075 0.925 32 H 0.054 0.946 33 H 0.077 0.923 34 H 0.027 0.973 35 H 0.074 0.926 36 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.616 9.994 -9.792 16.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.324 4.324 3 C -0.189 4.189 4 C -0.092 4.092 5 C -0.382 4.382 6 C 0.371 3.629 7 O -0.420 6.420 8 N -0.358 5.358 9 C -0.001 4.001 10 C 0.016 3.984 11 H 0.067 0.933 12 C -0.194 4.194 13 C 0.034 3.966 14 N -0.329 5.329 15 C -0.346 4.346 16 H 0.096 0.904 17 C -0.203 4.203 18 N -0.566 5.566 19 Si 0.735 3.265 20 H -0.204 1.204 21 H -0.217 1.217 22 H -0.217 1.217 23 S 0.479 5.521 24 H 0.087 0.913 25 H 0.096 0.904 26 H 0.096 0.904 27 H 0.159 0.841 28 H 0.169 0.831 29 H 0.234 0.766 30 H 0.081 0.919 31 H 0.093 0.907 32 H 0.072 0.928 33 H 0.096 0.904 34 H 0.045 0.955 35 H 0.092 0.908 36 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -8.379 8.889 -9.462 15.452 hybrid contribution -0.878 1.406 0.887 1.880 sum -9.257 10.295 -8.576 16.286 Atomic orbital electron populations 1.20365 0.87558 1.03151 1.03133 1.24265 1.01517 0.98089 1.08499 1.19888 0.92649 0.99453 1.06893 1.20701 0.96064 0.95162 0.97262 1.24712 0.97190 0.98071 1.18201 1.16948 0.86563 0.82586 0.76786 1.90789 1.41828 1.58197 1.51233 1.45862 1.10396 1.05760 1.73811 1.21826 0.81924 0.94619 1.01696 1.22526 0.94979 0.90582 0.90264 0.93257 1.23770 0.95976 1.00014 0.99611 1.22194 0.88923 0.90204 0.95286 1.46081 1.45823 1.29229 1.11729 1.18980 1.14232 1.08688 0.92734 0.90398 1.24746 0.99883 0.97512 0.98149 1.69829 1.40636 1.18126 1.28010 0.86152 0.80270 0.77496 0.82556 1.20408 1.21741 1.21705 1.83269 0.94271 1.07145 1.67382 0.91254 0.90362 0.90405 0.84073 0.83118 0.76575 0.91856 0.90665 0.92754 0.90445 0.95547 0.90790 0.93742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.66 10.33 36.00 0.37 -0.29 16 2 C -0.20 -2.26 6.28 -35.86 -0.23 -2.49 16 3 C -0.16 -1.79 9.99 -41.41 -0.41 -2.20 16 4 C -0.06 -0.80 10.01 -40.44 -0.40 -1.21 16 5 C -0.26 -4.05 6.45 -36.79 -0.24 -4.29 16 6 C 0.59 10.75 7.78 -12.89 -0.10 10.65 16 7 O -0.54 -11.37 16.84 5.19 0.09 -11.28 16 8 N -0.71 -12.73 5.52 -61.64 -0.34 -13.07 16 9 C 0.12 2.29 5.54 -4.04 -0.02 2.27 16 10 C 0.12 2.40 4.33 -66.86 -0.29 2.11 16 11 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 12 C -0.15 -2.82 7.86 -25.80 -0.20 -3.02 16 13 C 0.16 3.64 7.51 -2.97 -0.02 3.61 16 14 N -0.60 -14.69 3.57 -170.73 -0.61 -15.30 16 15 C -0.22 -5.90 10.51 -15.06 -0.16 -6.06 16 16 H 0.08 2.04 7.80 -52.48 -0.41 1.63 16 17 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 18 N -0.92 -26.93 11.39 55.49 0.63 -26.30 16 19 Si 0.90 22.13 29.55 -169.99 -5.02 17.10 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 22 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 23 S 0.21 2.74 22.08 -107.50 -2.37 0.37 16 24 H 0.07 0.51 8.11 -51.93 -0.42 0.09 16 25 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 28 H 0.15 1.95 8.06 -52.48 -0.42 1.53 16 29 H 0.40 6.88 7.59 -40.82 -0.31 6.57 16 30 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.08 1.58 8.14 -51.93 -0.42 1.16 16 32 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.08 1.39 8.10 -51.93 -0.42 0.97 16 34 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.07 1.88 7.16 -51.93 -0.37 1.51 16 36 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 322.56 15.07 4.86 4.86 Total: -1.00 -32.04 322.56 -9.44 -41.48 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -4.87 Total: 3.33 kcal Atomic # 6 Polarization: 0.62 SS G_CDS: -1.80 Total: -1.19 kcal Atomic # 7 Polarization: -54.36 SS G_CDS: -0.32 Total: -54.67 kcal Atomic # 8 Polarization: -11.37 SS G_CDS: 0.09 Total: -11.28 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.10 kcal Atomic # 16 Polarization: 2.74 SS G_CDS: -2.37 Total: 0.37 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.04 -9.44 -41.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038016044.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.105 kcal (2) G-P(sol) polarization free energy of solvation -32.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds