Wall clock time and date at job start Tue Mar 31 2020 01:12:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.33812 * 124.52571 * 2 1 4 4 C 1.37472 * 115.10656 * 179.77227 * 3 2 1 5 5 C 1.36648 * 113.29275 * 0.45093 * 4 3 2 6 6 C 1.46591 * 125.45759 * 179.84016 * 5 4 3 7 7 O 1.21701 * 119.99910 * 359.72123 * 6 5 4 8 8 N 1.34771 * 119.99644 * 179.72222 * 6 5 4 9 9 C 1.46505 * 119.99622 * 180.02562 * 8 6 5 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 8 6 11 11 H 1.09007 * 112.96750 * 53.32018 * 10 9 8 12 12 C 1.53946 * 113.77378 * 184.99939 * 10 9 8 13 13 C 1.53945 * 86.29134 * 137.90550 * 12 10 9 14 14 N 1.47581 * 86.11961 * 336.39637 * 13 12 10 15 15 C 1.36929 * 134.49167 * 204.63911 * 14 13 12 16 16 H 1.08003 * 120.00188 * 179.97438 * 15 14 13 17 17 C 1.38813 * 120.00102 * 0.02562 * 15 14 13 18 18 N 1.31623 * 119.99809 * 359.97438 * 17 15 14 19 19 Si 1.86799 * 119.99971 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47396 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47369 * 119.99643 * 19 17 15 22 22 H 1.48500 * 109.47186 * 239.99558 * 19 17 15 23 23 S 1.70624 * 124.52426 * 180.02562 * 2 1 3 24 24 H 1.08998 * 109.46969 * 180.02562 * 1 2 3 25 25 H 1.09005 * 109.47025 * 300.00131 * 1 2 3 26 26 H 1.08997 * 109.46895 * 59.99979 * 1 2 3 27 27 H 1.08002 * 122.44957 * 0.04091 * 3 2 1 28 28 H 1.08005 * 123.35804 * 180.27291 * 4 3 2 29 29 H 0.96996 * 120.00772 * 359.97438 * 8 6 5 30 30 H 1.09002 * 109.47068 * 299.99729 * 9 8 6 31 31 H 1.09001 * 109.47372 * 59.99816 * 9 8 6 32 32 H 1.09003 * 113.74151 * 252.25618 * 12 10 9 33 33 H 1.09006 * 113.73813 * 23.45283 * 12 10 9 34 34 H 1.08999 * 113.76275 * 90.69660 * 13 12 10 35 35 H 1.08993 * 113.76995 * 221.97658 * 13 12 10 36 36 H 0.96998 * 119.99367 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2654 1.1024 0.0000 4 6 3.6216 0.8775 0.0049 5 6 3.9492 -0.4491 -0.0009 6 6 5.3124 -0.9884 -0.0010 7 8 6.2659 -0.2321 -0.0007 8 7 5.5096 -2.3216 -0.0014 9 6 6.8719 -2.8605 -0.0009 10 6 6.8155 -4.3894 -0.0009 11 1 6.2010 -4.7924 -0.8060 12 6 8.1952 -5.0613 0.1224 13 6 7.5200 -6.0401 1.1001 14 7 6.5242 -4.9739 1.3226 15 6 5.6721 -4.6551 2.3459 16 1 5.0234 -3.7958 2.2607 17 6 5.6429 -5.4356 3.4935 18 7 6.4338 -6.4825 3.5976 19 14 4.4800 -5.0010 4.8893 20 1 3.7031 -3.7884 4.5270 21 1 3.5488 -6.1327 5.1284 22 1 5.2639 -4.7360 6.1223 23 16 2.4740 -1.4057 -0.0006 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.8429 2.0964 0.0007 28 1 4.3551 1.6702 0.0099 29 1 4.7496 -2.9243 -0.0013 30 1 7.3992 -2.5160 -0.8905 31 1 7.3984 -2.5167 0.8895 32 1 8.5393 -5.5295 -0.7999 33 1 8.9519 -4.4279 0.5854 34 1 7.1118 -6.9292 0.6195 35 1 8.1235 -6.2704 1.9780 36 1 6.4131 -7.0281 4.3994 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038016044.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:12:52 Heat of formation + Delta-G solvation = 23.979645 kcal Electronic energy + Delta-G solvation = -19282.019756 eV Core-core repulsion = 16279.623636 eV Total energy + Delta-G solvation = -3002.396119 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.91421 -39.66487 -38.64538 -35.60684 -34.22022 -33.02302 -30.09903 -29.70922 -27.70195 -25.29922 -24.67322 -23.78712 -22.30707 -21.04508 -20.26453 -19.09230 -18.37316 -17.37815 -17.13072 -16.71987 -16.33082 -16.07096 -15.69482 -15.17010 -14.98672 -14.71273 -14.54709 -13.99515 -13.66330 -13.35559 -13.30704 -12.98322 -12.92726 -12.75732 -12.69660 -12.58446 -12.28563 -11.89388 -11.84096 -11.53765 -11.44450 -11.05195 -10.84458 -10.21098 -9.63684 -9.56906 -8.88797 -7.87486 -5.18967 -0.52242 0.44135 0.88765 1.37299 1.41884 1.43677 1.52232 2.06961 2.18489 2.46619 3.31838 3.37780 3.75148 3.86434 3.98833 4.10808 4.26356 4.32877 4.38344 4.59572 4.67412 4.70249 4.74684 4.86060 5.04989 5.06265 5.07090 5.08287 5.17533 5.32093 5.34811 5.42010 5.61260 5.74270 5.98175 6.39493 6.95702 7.04868 7.64831 8.59485 9.29378 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.015849 B = 0.005647 C = 0.004565 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.253470 B = 4956.997093 C = 6132.689492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C -0.184 4.184 3 C -0.165 4.165 4 C -0.050 4.050 5 C -0.305 4.305 6 C 0.584 3.416 7 O -0.578 6.578 8 N -0.709 5.709 9 C 0.131 3.869 10 C 0.130 3.870 11 H 0.072 0.928 12 C -0.129 4.129 13 C 0.151 3.849 14 N -0.629 5.629 15 C -0.212 4.212 16 H 0.080 0.920 17 C -0.068 4.068 18 N -0.952 5.952 19 Si 0.962 3.038 20 H -0.267 1.267 21 H -0.290 1.290 22 H -0.298 1.298 23 S 0.207 5.793 24 H 0.074 0.926 25 H 0.094 0.906 26 H 0.099 0.901 27 H 0.173 0.827 28 H 0.151 0.849 29 H 0.403 0.597 30 H 0.085 0.915 31 H 0.045 0.955 32 H 0.096 0.904 33 H 0.078 0.922 34 H 0.024 0.976 35 H 0.039 0.961 36 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.623 11.417 -11.114 19.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.304 4.304 3 C -0.195 4.195 4 C -0.084 4.084 5 C -0.425 4.425 6 C 0.372 3.628 7 O -0.461 6.461 8 N -0.358 5.358 9 C 0.007 3.993 10 C 0.024 3.976 11 H 0.089 0.911 12 C -0.167 4.167 13 C 0.025 3.975 14 N -0.356 5.356 15 C -0.341 4.341 16 H 0.098 0.902 17 C -0.261 4.261 18 N -0.602 5.602 19 Si 0.791 3.209 20 H -0.191 1.191 21 H -0.217 1.217 22 H -0.226 1.226 23 S 0.475 5.525 24 H 0.093 0.907 25 H 0.112 0.888 26 H 0.118 0.882 27 H 0.190 0.810 28 H 0.169 0.831 29 H 0.238 0.762 30 H 0.103 0.897 31 H 0.064 0.936 32 H 0.114 0.886 33 H 0.097 0.903 34 H 0.042 0.958 35 H 0.058 0.942 36 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -10.402 10.320 -10.823 18.217 hybrid contribution -0.327 1.033 1.221 1.632 sum -10.729 11.353 -9.602 18.336 Atomic orbital electron populations 1.20558 0.84864 1.04168 1.04878 1.24766 1.03108 0.96872 1.05688 1.20136 0.91456 1.01050 1.06838 1.20970 0.97448 0.94511 0.95502 1.24508 0.96668 0.99248 1.22090 1.17337 0.87541 0.82250 0.75709 1.90751 1.43364 1.58854 1.53128 1.45846 1.10196 1.05981 1.73811 1.21649 0.82378 0.93976 1.01292 1.22707 0.95709 0.90911 0.88314 0.91068 1.23560 0.95219 0.98046 0.99885 1.22171 0.89039 0.90947 0.95308 1.46426 1.45595 1.30257 1.13321 1.19281 1.13456 1.07961 0.93390 0.90179 1.25473 1.01921 0.98123 1.00584 1.70000 1.42550 1.19384 1.28270 0.85242 0.78521 0.77518 0.79597 1.19102 1.21741 1.22557 1.83241 0.93532 1.08098 1.67676 0.90690 0.88789 0.88212 0.80970 0.83110 0.76178 0.89671 0.93636 0.88569 0.90297 0.95836 0.94227 0.94543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.01 10.33 71.23 0.74 -0.27 16 2 C -0.18 -3.53 6.28 24.68 0.15 -3.37 16 3 C -0.17 -3.25 9.99 21.08 0.21 -3.04 16 4 C -0.05 -1.30 10.01 21.72 0.22 -1.08 16 5 C -0.31 -9.28 6.45 24.08 0.16 -9.12 16 6 C 0.58 21.50 7.78 86.42 0.67 22.17 16 7 O -0.58 -24.68 16.84 -4.35 -0.07 -24.76 16 8 N -0.71 -25.25 5.52 -467.16 -2.58 -27.83 16 9 C 0.13 4.78 5.54 86.38 0.48 5.25 16 10 C 0.13 4.83 4.33 45.09 0.20 5.02 16 11 H 0.07 2.43 8.14 -2.38 -0.02 2.41 16 12 C -0.13 -4.44 7.86 31.25 0.25 -4.20 16 13 C 0.15 6.92 7.51 86.48 0.65 7.57 16 14 N -0.63 -30.73 3.57 -694.07 -2.48 -33.21 16 15 C -0.21 -11.53 10.51 84.04 0.88 -10.65 16 16 H 0.08 4.21 7.80 -2.91 -0.02 4.19 16 17 C -0.07 -3.88 5.50 84.86 0.47 -3.41 16 18 N -0.95 -57.40 11.39 21.65 0.25 -57.15 16 19 Si 0.96 46.14 29.55 68.60 2.03 48.17 16 20 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 21 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 22 H -0.30 -14.55 7.11 99.48 0.71 -13.84 16 23 S 0.21 5.04 22.08 -56.49 -1.25 3.79 16 24 H 0.07 0.83 8.11 -2.39 -0.02 0.81 16 25 H 0.09 0.89 8.14 -2.38 -0.02 0.87 16 26 H 0.10 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.17 2.29 8.06 -2.91 -0.02 2.26 16 28 H 0.15 3.80 8.06 -2.91 -0.02 3.78 16 29 H 0.40 13.68 7.59 -92.71 -0.70 12.97 16 30 H 0.09 2.73 8.14 -2.39 -0.02 2.71 16 31 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 33 H 0.08 2.72 8.10 -2.38 -0.02 2.71 16 34 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 35 H 0.04 2.08 7.16 -2.39 -0.02 2.06 16 36 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 Total: -1.00 -70.93 322.56 1.34 -69.58 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: 0.39 Total: 16.55 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: 5.07 Total: 4.87 kcal Atomic # 7 Polarization: -113.38 SS G_CDS: -4.81 Total: -118.20 kcal Atomic # 8 Polarization: -24.68 SS G_CDS: -0.07 Total: -24.76 kcal Atomic # 14 Polarization: 46.14 SS G_CDS: 2.03 Total: 48.17 kcal Atomic # 16 Polarization: 5.04 SS G_CDS: -1.25 Total: 3.79 kcal Total: -70.93 1.34 -69.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038016044.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.563 kcal (2) G-P(sol) polarization free energy of solvation -70.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.637 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.583 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds