Wall clock time and date at job start Tue Mar 31 2020 01:25:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.32770 * 123.45903 * 2 1 4 4 S 1.75507 * 110.57307 * 180.25009 * 3 2 1 5 5 C 1.70447 * 92.44574 * 359.73466 * 4 3 2 6 6 C 1.36014 * 110.81627 * 0.02562 * 5 4 3 7 7 C 1.47192 * 123.45766 * 179.97438 * 6 5 4 8 8 O 1.21643 * 119.99750 * 180.02562 * 7 6 5 9 9 N 1.34777 * 120.00208 * 359.74999 * 7 6 5 10 10 C 1.46504 * 119.99854 * 180.27760 * 9 7 6 11 11 C 1.52996 * 109.46681 * 179.97438 * 10 9 7 12 12 H 1.08997 * 112.96453 * 306.67166 * 11 10 9 13 13 C 1.53950 * 113.76821 * 174.99924 * 11 10 9 14 14 C 1.53941 * 86.28838 * 222.08779 * 13 11 10 15 15 N 1.47573 * 113.77253 * 78.50350 * 11 10 9 16 16 C 1.36936 * 134.49644 * 318.94388 * 15 11 10 17 17 H 1.08004 * 119.99623 * 359.97438 * 16 15 11 18 18 C 1.38812 * 120.00487 * 179.97438 * 16 15 11 19 19 N 1.31618 * 120.00053 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00137 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46553 * 60.00020 * 20 18 16 22 22 H 1.48496 * 109.47420 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47179 * 300.00387 * 20 18 16 24 24 H 1.08997 * 109.47567 * 270.21567 * 1 2 3 25 25 H 1.09002 * 109.47319 * 30.21401 * 1 2 3 26 26 H 1.09003 * 109.47621 * 150.20886 * 1 2 3 27 27 H 1.07996 * 124.71046 * 359.97438 * 3 2 1 28 28 H 1.07993 * 124.59393 * 180.02562 * 5 4 3 29 29 H 0.97000 * 119.99736 * 0.27034 * 9 7 6 30 30 H 1.08998 * 109.46968 * 299.99782 * 10 9 7 31 31 H 1.08997 * 109.47198 * 59.99605 * 10 9 7 32 32 H 1.08998 * 113.73979 * 336.43793 * 13 11 10 33 33 H 1.09000 * 113.74207 * 107.63072 * 13 11 10 34 34 H 1.09008 * 113.76463 * 137.90741 * 14 13 11 35 35 H 1.08992 * 113.77223 * 269.18642 * 14 13 11 36 36 H 0.96993 * 120.00275 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2390 1.1077 0.0000 4 16 3.9499 0.7163 -0.0072 5 6 3.6410 -0.9600 -0.0022 6 6 2.3032 -1.2049 0.0040 7 6 1.7261 -2.5590 0.0089 8 8 0.5186 -2.7055 0.0139 9 7 2.5356 -3.6366 0.0022 10 6 1.9612 -4.9843 0.0009 11 6 3.0882 -6.0190 -0.0078 12 1 3.8029 -5.8626 -0.8157 13 6 2.5967 -7.4729 0.1130 14 6 3.7721 -7.6840 1.0844 15 7 3.7149 -6.2270 1.3120 16 6 4.0919 -5.4003 2.3364 17 1 3.9371 -4.3345 2.2551 18 6 4.6730 -5.9319 3.4795 19 7 4.8622 -7.2306 3.5785 20 14 5.1879 -4.8039 4.8767 21 1 4.0000 -4.0721 5.3852 22 1 5.7789 -5.6122 5.9733 23 1 6.1945 -3.8307 4.3819 24 1 -0.3634 0.0039 1.0276 25 1 -0.3634 0.8881 -0.5172 26 1 -0.3634 -0.8918 -0.5106 27 1 1.8374 2.1102 -0.0004 28 1 4.4042 -1.7240 -0.0038 29 1 3.4986 -3.5197 -0.0019 30 1 1.3501 -5.1196 0.8932 31 1 1.3420 -5.1145 -0.8867 32 1 1.6173 -7.5675 0.5819 33 1 2.6817 -8.0431 -0.8120 34 1 3.5152 -8.2763 1.9627 35 1 4.6886 -8.0190 0.5988 36 1 5.2685 -7.6021 4.3770 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038146546.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:25:17 Heat of formation + Delta-G solvation = 45.332649 kcal Electronic energy + Delta-G solvation = -19523.512730 eV Core-core repulsion = 16522.042547 eV Total energy + Delta-G solvation = -3001.470183 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -39.75052 -38.09144 -36.92300 -34.17787 -32.22542 -31.15428 -28.23257 -27.86509 -27.13899 -24.18259 -23.38084 -22.20545 -20.56735 -19.36128 -18.62156 -17.76578 -16.96217 -16.39446 -15.39114 -15.32906 -14.69083 -14.40890 -13.94977 -13.63087 -13.51360 -13.22061 -13.03848 -12.85192 -12.62384 -12.08457 -11.86253 -11.80208 -11.43272 -11.11869 -11.02551 -10.92714 -10.74624 -10.57281 -10.01677 -9.78269 -9.63478 -9.31580 -8.94613 -8.81236 -8.63970 -8.30115 -6.91323 -5.78107 -3.10702 0.77922 1.51985 1.88705 2.03822 3.36600 3.42001 3.42564 3.52437 3.62231 4.41670 4.66224 5.02771 5.12181 5.22937 5.30298 5.39560 5.52803 5.60348 5.67695 5.73212 5.80155 5.90130 6.00361 6.07934 6.22233 6.30581 6.39058 6.55206 6.60996 6.71022 6.88571 7.23130 7.39531 7.57638 7.87965 7.96901 8.54741 9.02594 9.69423 10.57687 11.38493 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.016158 B = 0.005470 C = 0.004528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.511433 B = 5117.478604 C = 6182.273189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.049 4.049 3 C -0.250 4.250 4 S 0.173 5.827 5 C -0.206 4.206 6 C -0.149 4.149 7 C 0.573 3.427 8 O -0.543 6.543 9 N -0.708 5.708 10 C 0.124 3.876 11 C 0.125 3.875 12 H 0.049 0.951 13 C -0.155 4.155 14 C 0.159 3.841 15 N -0.602 5.602 16 C -0.221 4.221 17 H 0.077 0.923 18 C -0.006 4.006 19 N -0.919 5.919 20 Si 0.906 3.094 21 H -0.284 1.284 22 H -0.289 1.289 23 H -0.286 1.286 24 H 0.071 0.929 25 H 0.059 0.941 26 H 0.093 0.907 27 H 0.166 0.834 28 H 0.172 0.828 29 H 0.400 0.600 30 H 0.074 0.926 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.054 0.946 34 H 0.074 0.926 35 H 0.026 0.974 36 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.272 12.560 -9.760 16.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.061 4.061 3 C -0.384 4.384 4 S 0.440 5.560 5 C -0.344 4.344 6 C -0.167 4.167 7 C 0.358 3.642 8 O -0.423 6.423 9 N -0.357 5.357 10 C 0.000 4.000 11 C 0.017 3.983 12 H 0.066 0.934 13 C -0.194 4.194 14 C 0.034 3.966 15 N -0.328 5.328 16 C -0.348 4.348 17 H 0.095 0.905 18 C -0.202 4.202 19 N -0.566 5.566 20 Si 0.736 3.264 21 H -0.211 1.211 22 H -0.215 1.215 23 H -0.213 1.213 24 H 0.089 0.911 25 H 0.078 0.922 26 H 0.111 0.889 27 H 0.184 0.816 28 H 0.189 0.811 29 H 0.235 0.765 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.095 0.905 33 H 0.072 0.928 34 H 0.092 0.908 35 H 0.044 0.956 36 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.638 13.366 -9.427 16.567 hybrid contribution -0.138 -0.239 0.907 0.948 sum -2.776 13.126 -8.521 15.893 Atomic orbital electron populations 1.20646 0.88745 1.03507 1.02917 1.19879 0.97537 0.89912 0.98750 1.25259 0.96383 1.02472 1.14319 1.82927 1.05769 0.97193 1.70080 1.25704 0.99867 1.02672 1.06175 1.20285 0.92042 0.94702 1.09639 1.17550 0.86401 0.83549 0.76704 1.90704 1.14065 1.86536 1.51025 1.45848 1.10113 1.06096 1.73659 1.21783 0.96762 0.79910 1.01553 1.22511 0.92433 0.93111 0.90206 0.93370 1.23769 1.00781 0.95296 0.99567 1.22194 0.92299 0.86840 0.95306 1.46056 1.71277 1.03492 1.12008 1.18882 1.33669 0.89304 0.92976 0.90511 1.24745 1.01365 0.95966 0.98159 1.69801 1.48675 1.09738 1.28402 0.86298 0.78411 0.79561 0.82106 1.21094 1.21511 1.21251 0.91055 0.92163 0.88855 0.81630 0.81096 0.76512 0.90803 0.92027 0.90471 0.92789 0.90816 0.95586 0.93622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.25 9.54 36.01 0.34 -0.91 16 2 C -0.05 -0.67 6.01 -104.06 -0.63 -1.30 16 3 C -0.25 -2.78 10.91 28.86 0.31 -2.47 16 4 S 0.17 1.83 23.02 -107.50 -2.48 -0.64 16 5 C -0.21 -2.68 10.38 29.93 0.31 -2.37 16 6 C -0.15 -2.26 5.98 -104.63 -0.63 -2.88 16 7 C 0.57 10.16 7.79 -12.62 -0.10 10.06 16 8 O -0.54 -10.85 14.21 5.24 0.07 -10.78 16 9 N -0.71 -12.25 5.50 -61.46 -0.34 -12.59 16 10 C 0.12 2.26 5.54 -4.04 -0.02 2.24 16 11 C 0.13 2.39 4.33 -66.87 -0.29 2.10 16 12 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 13 C -0.16 -2.82 7.86 -25.81 -0.20 -3.02 16 14 C 0.16 3.62 7.51 -2.98 -0.02 3.60 16 15 N -0.60 -14.59 3.57 -170.76 -0.61 -15.20 16 16 C -0.22 -5.92 10.51 -15.06 -0.16 -6.08 16 17 H 0.08 1.98 7.80 -52.48 -0.41 1.58 16 18 C -0.01 -0.16 5.50 -17.43 -0.10 -0.25 16 19 N -0.92 -26.89 11.38 55.49 0.63 -26.26 16 20 Si 0.91 22.08 29.55 -169.99 -5.02 17.05 16 21 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 23 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 24 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 25 H 0.06 0.60 8.13 -51.93 -0.42 0.17 16 26 H 0.09 1.37 6.03 -51.93 -0.31 1.06 16 27 H 0.17 1.40 8.06 -52.49 -0.42 0.97 16 28 H 0.17 2.02 7.01 -52.49 -0.37 1.65 16 29 H 0.40 6.51 6.97 -40.82 -0.28 6.23 16 30 H 0.07 1.54 8.14 -51.93 -0.42 1.12 16 31 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 32 H 0.08 1.39 8.10 -51.93 -0.42 0.96 16 33 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.07 1.87 7.15 -51.92 -0.37 1.50 16 35 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 LS Contribution 316.84 15.07 4.77 4.77 Total: -1.00 -31.47 316.84 -8.82 -40.29 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -4.68 Total: 4.62 kcal Atomic # 6 Polarization: -0.11 SS G_CDS: -1.17 Total: -1.28 kcal Atomic # 7 Polarization: -53.72 SS G_CDS: -0.32 Total: -54.04 kcal Atomic # 8 Polarization: -10.85 SS G_CDS: 0.07 Total: -10.78 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.05 kcal Atomic # 16 Polarization: 1.83 SS G_CDS: -2.48 Total: -0.64 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -31.47 -8.82 -40.29 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038146546.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.626 kcal (2) G-P(sol) polarization free energy of solvation -31.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.294 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds