Wall clock time and date at job start Tue Mar 31 2020 01:25:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.32770 * 123.45903 * 2 1 4 4 S 1.75507 * 110.57307 * 180.25009 * 3 2 1 5 5 C 1.70447 * 92.44574 * 359.73466 * 4 3 2 6 6 C 1.36014 * 110.81627 * 0.02562 * 5 4 3 7 7 C 1.47192 * 123.45766 * 179.97438 * 6 5 4 8 8 O 1.21643 * 119.99750 * 180.02562 * 7 6 5 9 9 N 1.34777 * 120.00208 * 359.74999 * 7 6 5 10 10 C 1.46504 * 119.99854 * 180.27760 * 9 7 6 11 11 C 1.52996 * 109.46681 * 179.97438 * 10 9 7 12 12 H 1.08997 * 112.96453 * 306.67166 * 11 10 9 13 13 C 1.53950 * 113.76821 * 174.99924 * 11 10 9 14 14 C 1.53941 * 86.28838 * 222.08779 * 13 11 10 15 15 N 1.47573 * 113.77253 * 78.50350 * 11 10 9 16 16 C 1.36936 * 134.49644 * 318.94388 * 15 11 10 17 17 H 1.08004 * 119.99623 * 359.97438 * 16 15 11 18 18 C 1.38812 * 120.00487 * 179.97438 * 16 15 11 19 19 N 1.31618 * 120.00053 * 0.02562 * 18 16 15 20 20 Si 1.86802 * 120.00137 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46553 * 60.00020 * 20 18 16 22 22 H 1.48496 * 109.47420 * 180.02562 * 20 18 16 23 23 H 1.48501 * 109.47179 * 300.00387 * 20 18 16 24 24 H 1.08997 * 109.47567 * 270.21567 * 1 2 3 25 25 H 1.09002 * 109.47319 * 30.21401 * 1 2 3 26 26 H 1.09003 * 109.47621 * 150.20886 * 1 2 3 27 27 H 1.07996 * 124.71046 * 359.97438 * 3 2 1 28 28 H 1.07993 * 124.59393 * 180.02562 * 5 4 3 29 29 H 0.97000 * 119.99736 * 0.27034 * 9 7 6 30 30 H 1.08998 * 109.46968 * 299.99782 * 10 9 7 31 31 H 1.08997 * 109.47198 * 59.99605 * 10 9 7 32 32 H 1.08998 * 113.73979 * 336.43793 * 13 11 10 33 33 H 1.09000 * 113.74207 * 107.63072 * 13 11 10 34 34 H 1.09008 * 113.76463 * 137.90741 * 14 13 11 35 35 H 1.08992 * 113.77223 * 269.18642 * 14 13 11 36 36 H 0.96993 * 120.00275 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2390 1.1077 0.0000 4 16 3.9499 0.7163 -0.0072 5 6 3.6410 -0.9600 -0.0022 6 6 2.3032 -1.2049 0.0040 7 6 1.7261 -2.5590 0.0089 8 8 0.5186 -2.7055 0.0139 9 7 2.5356 -3.6366 0.0022 10 6 1.9612 -4.9843 0.0009 11 6 3.0882 -6.0190 -0.0078 12 1 3.8029 -5.8626 -0.8157 13 6 2.5967 -7.4729 0.1130 14 6 3.7721 -7.6840 1.0844 15 7 3.7149 -6.2270 1.3120 16 6 4.0919 -5.4003 2.3364 17 1 3.9371 -4.3345 2.2551 18 6 4.6730 -5.9319 3.4795 19 7 4.8622 -7.2306 3.5785 20 14 5.1879 -4.8039 4.8767 21 1 4.0000 -4.0721 5.3852 22 1 5.7789 -5.6122 5.9733 23 1 6.1945 -3.8307 4.3819 24 1 -0.3634 0.0039 1.0276 25 1 -0.3634 0.8881 -0.5172 26 1 -0.3634 -0.8918 -0.5106 27 1 1.8374 2.1102 -0.0004 28 1 4.4042 -1.7240 -0.0038 29 1 3.4986 -3.5197 -0.0019 30 1 1.3501 -5.1196 0.8932 31 1 1.3420 -5.1145 -0.8867 32 1 1.6173 -7.5675 0.5819 33 1 2.6817 -8.0431 -0.8120 34 1 3.5152 -8.2763 1.9627 35 1 4.6886 -8.0190 0.5988 36 1 5.2685 -7.6021 4.3770 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038146546.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:25:16 Heat of formation + Delta-G solvation = 25.048761 kcal Electronic energy + Delta-G solvation = -19524.392306 eV Core-core repulsion = 16522.042547 eV Total energy + Delta-G solvation = -3002.349759 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.05635 -39.69321 -38.06729 -35.62689 -34.22656 -32.22268 -29.92435 -29.39579 -28.28942 -25.36534 -25.29569 -23.70023 -21.81427 -20.97105 -19.96449 -18.74397 -18.53575 -17.79598 -17.10369 -16.77822 -16.26016 -15.77505 -15.64065 -15.02954 -14.85553 -14.44226 -14.31876 -14.07666 -13.63206 -13.52290 -13.28915 -13.00876 -12.93356 -12.80172 -12.68574 -12.60931 -12.32895 -11.85015 -11.84025 -11.53799 -11.35791 -10.84289 -10.75274 -10.10842 -9.84503 -9.24326 -8.88732 -7.87344 -5.18838 -0.22926 0.62496 0.96035 0.98288 1.41749 1.44619 1.49911 2.20331 2.35088 2.46930 3.32494 3.38375 3.72610 3.90608 4.02351 4.15121 4.21797 4.34176 4.39014 4.62428 4.65120 4.70697 4.74196 4.82624 4.87763 5.00349 5.06040 5.09171 5.27850 5.33152 5.44002 5.58592 5.61750 5.74899 5.98186 6.53808 6.95284 7.20804 7.65036 8.59949 9.29239 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.016158 B = 0.005470 C = 0.004528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.511433 B = 5117.478604 C = 6182.273189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C -0.078 4.078 3 C -0.241 4.241 4 S 0.241 5.759 5 C -0.215 4.215 6 C -0.181 4.181 7 C 0.568 3.432 8 O -0.575 6.575 9 N -0.708 5.708 10 C 0.134 3.866 11 C 0.132 3.868 12 H 0.072 0.928 13 C -0.130 4.130 14 C 0.150 3.850 15 N -0.629 5.629 16 C -0.214 4.214 17 H 0.082 0.918 18 C -0.068 4.068 19 N -0.953 5.953 20 Si 0.964 3.036 21 H -0.286 1.286 22 H -0.296 1.296 23 H -0.273 1.273 24 H 0.064 0.936 25 H 0.088 0.912 26 H 0.066 0.934 27 H 0.197 0.803 28 H 0.178 0.822 29 H 0.405 0.595 30 H 0.042 0.958 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.095 0.905 34 H 0.038 0.962 35 H 0.023 0.977 36 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.760 14.939 -11.119 18.826 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.089 4.089 3 C -0.375 4.375 4 S 0.508 5.492 5 C -0.354 4.354 6 C -0.199 4.199 7 C 0.355 3.645 8 O -0.457 6.457 9 N -0.357 5.357 10 C 0.009 3.991 11 C 0.026 3.974 12 H 0.089 0.911 13 C -0.169 4.169 14 C 0.025 3.975 15 N -0.355 5.355 16 C -0.343 4.343 17 H 0.100 0.900 18 C -0.261 4.261 19 N -0.602 5.602 20 Si 0.793 3.207 21 H -0.213 1.213 22 H -0.223 1.223 23 H -0.199 1.199 24 H 0.083 0.917 25 H 0.106 0.894 26 H 0.085 0.915 27 H 0.214 0.786 28 H 0.196 0.804 29 H 0.241 0.759 30 H 0.060 0.940 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.113 0.887 34 H 0.057 0.943 35 H 0.041 0.959 36 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -2.122 15.772 -10.825 19.247 hybrid contribution -0.270 -0.898 1.251 1.563 sum -2.392 14.874 -9.574 17.850 Atomic orbital electron populations 1.20572 0.88754 1.03533 1.02518 1.19991 0.97946 0.90154 1.00785 1.25662 0.96876 1.03153 1.11848 1.82743 1.04536 0.94257 1.67624 1.25958 0.99283 1.05024 1.05138 1.20224 0.93204 0.93776 1.12709 1.18017 0.86081 0.84621 0.75777 1.90681 1.15361 1.87162 1.52501 1.45819 1.10372 1.05792 1.73748 1.21566 0.96173 0.80392 1.00961 1.22679 0.92440 0.94042 0.88252 0.91101 1.23563 0.98648 0.94797 0.99856 1.22167 0.94179 0.85900 0.95278 1.46396 1.71410 1.04107 1.13617 1.19228 1.31547 0.89947 0.93589 0.90032 1.25480 1.02829 0.97182 1.00634 1.69982 1.50464 1.11199 1.28602 0.85370 0.78009 0.77980 0.79359 1.21275 1.22253 1.19892 0.91717 0.89371 0.91514 0.78596 0.80449 0.75941 0.93970 0.90012 0.90421 0.88663 0.94329 0.95886 0.94554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.34 9.54 71.24 0.68 -1.66 16 2 C -0.08 -2.01 6.01 -19.46 -0.12 -2.12 16 3 C -0.24 -4.57 10.91 66.64 0.73 -3.84 16 4 S 0.24 4.25 23.02 -56.49 -1.30 2.95 16 5 C -0.22 -5.18 10.38 67.30 0.70 -4.48 16 6 C -0.18 -5.33 5.98 -19.87 -0.12 -5.45 16 7 C 0.57 20.17 7.79 86.60 0.67 20.85 16 8 O -0.57 -23.45 14.21 -4.17 -0.06 -23.51 16 9 N -0.71 -24.12 5.50 -466.59 -2.56 -26.69 16 10 C 0.13 4.76 5.54 86.38 0.48 5.24 16 11 C 0.13 4.84 4.33 45.09 0.20 5.03 16 12 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 13 C -0.13 -4.49 7.86 31.25 0.25 -4.24 16 14 C 0.15 6.88 7.51 86.48 0.65 7.53 16 15 N -0.63 -30.42 3.57 -694.18 -2.48 -32.90 16 16 C -0.21 -11.55 10.51 84.03 0.88 -10.67 16 17 H 0.08 4.20 7.80 -2.91 -0.02 4.18 16 18 C -0.07 -3.87 5.50 84.86 0.47 -3.41 16 19 N -0.95 -57.30 11.38 21.65 0.25 -57.06 16 20 Si 0.96 45.92 29.55 68.60 2.03 47.95 16 21 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 22 H -0.30 -14.31 7.11 99.48 0.71 -13.61 16 23 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 24 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 25 H 0.09 1.58 8.13 -2.39 -0.02 1.56 16 26 H 0.07 2.00 6.03 -2.39 -0.01 1.99 16 27 H 0.20 2.42 8.06 -2.91 -0.02 2.40 16 28 H 0.18 3.87 7.01 -2.91 -0.02 3.85 16 29 H 0.40 12.80 6.97 -92.71 -0.65 12.16 16 30 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 31 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 32 H 0.08 2.69 8.10 -2.39 -0.02 2.67 16 33 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 34 H 0.04 2.03 7.15 -2.38 -0.02 2.01 16 35 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 Total: -1.00 -69.84 316.84 1.78 -68.06 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: 0.45 Total: 18.41 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: 5.46 Total: 2.78 kcal Atomic # 7 Polarization: -111.85 SS G_CDS: -4.80 Total: -116.64 kcal Atomic # 8 Polarization: -23.45 SS G_CDS: -0.06 Total: -23.51 kcal Atomic # 14 Polarization: 45.92 SS G_CDS: 2.03 Total: 47.95 kcal Atomic # 16 Polarization: 4.25 SS G_CDS: -1.30 Total: 2.95 kcal Total: -69.84 1.78 -68.06 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038146546.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.108 kcal (2) G-P(sol) polarization free energy of solvation -69.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.059 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds