Wall clock time and date at job start Tue Mar 31 2020 01:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33819 * 122.44739 * 2 1 4 4 S 1.70611 * 110.95643 * 180.02562 * 3 2 1 5 5 C 1.75825 * 91.56474 * 359.97438 * 4 3 2 6 6 C 1.46582 * 125.46054 * 180.02562 * 5 4 3 7 7 O 1.21700 * 120.00044 * 180.02562 * 6 5 4 8 8 N 1.34773 * 119.99880 * 0.02701 * 6 5 4 9 9 C 1.46500 * 120.00055 * 179.97438 * 8 6 5 10 10 C 1.53002 * 109.47404 * 179.97438 * 9 8 6 11 11 H 1.08994 * 112.73622 * 303.76259 * 10 9 8 12 12 C 1.53495 * 113.47041 * 172.93944 * 10 9 8 13 13 C 1.53497 * 83.34454 * 219.15595 * 12 10 9 14 14 N 1.47066 * 113.46479 * 74.50242 * 10 9 8 15 15 C 1.36937 * 136.06113 * 321.64192 * 14 10 9 16 16 H 1.07995 * 120.00001 * 0.02562 * 15 14 10 17 17 C 1.38817 * 120.00320 * 179.97438 * 15 14 10 18 18 N 1.31620 * 119.99557 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99975 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47363 * 60.00463 * 19 17 15 21 21 H 1.48506 * 109.46719 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47174 * 300.00290 * 19 17 15 23 23 C 1.36648 * 109.08436 * 0.26376 * 5 4 3 24 24 H 1.08999 * 109.46841 * 89.98273 * 1 2 3 25 25 H 1.09005 * 109.46440 * 209.97433 * 1 2 3 26 26 H 1.08990 * 109.47619 * 329.97469 * 1 2 3 27 27 H 1.08003 * 124.51905 * 0.04145 * 3 2 1 28 28 H 0.96999 * 120.00230 * 359.97438 * 8 6 5 29 29 H 1.08998 * 109.47316 * 59.99433 * 9 8 6 30 30 H 1.09006 * 109.47204 * 299.99927 * 9 8 6 31 31 H 1.09006 * 114.20556 * 332.74032 * 12 10 9 32 32 H 1.08994 * 114.20812 * 105.36675 * 12 10 9 33 33 H 1.09007 * 113.46266 * 271.28548 * 13 12 10 34 34 H 1.08993 * 113.46849 * 140.85107 * 13 12 10 35 35 H 0.96999 * 119.99537 * 179.97438 * 18 17 15 36 36 H 1.08004 * 123.35667 * 179.73401 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1293 0.0000 4 16 3.8969 0.7894 -0.0007 5 6 3.5938 -0.9425 -0.0002 6 6 4.6233 -1.9860 0.0000 7 8 4.3004 -3.1594 -0.0001 8 7 5.9274 -1.6459 0.0005 9 6 6.9563 -2.6888 0.0013 10 6 8.3414 -2.0388 0.0010 11 1 8.4855 -1.3546 -0.8352 12 6 9.4884 -3.0438 0.1749 13 6 10.0883 -1.9359 1.0516 14 7 8.7182 -1.4628 1.3006 15 6 8.0771 -0.7807 2.3000 16 1 7.0243 -0.5566 2.2116 17 6 8.7800 -0.3783 3.4274 18 7 10.0629 -0.6519 3.5354 19 14 7.9051 0.5515 4.7910 20 1 6.8051 -0.2853 5.3340 21 1 8.8707 0.8648 5.8749 22 1 7.3443 1.8148 4.2479 23 6 2.2447 -1.1600 -0.0055 24 1 -0.3633 0.0003 -1.0277 25 1 -0.3632 -0.8903 0.5135 26 1 -0.3634 0.8896 0.5142 27 1 1.8024 2.1232 0.0006 28 1 6.1848 -0.7107 0.0002 29 1 6.8461 -3.3087 -0.8884 30 1 6.8454 -3.3080 0.8915 31 1 9.2131 -3.9461 0.7210 32 1 10.0471 -3.2469 -0.7387 33 1 10.6987 -1.2247 0.4950 34 1 10.5869 -2.3115 1.9450 35 1 10.5541 -0.3703 4.3230 36 1 1.8020 -2.1452 -0.0105 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038229595.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:19:09 Heat of formation + Delta-G solvation = 48.470649 kcal Electronic energy + Delta-G solvation = -19303.199210 eV Core-core repulsion = 16301.865100 eV Total energy + Delta-G solvation = -3001.334110 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.57049 -38.36843 -37.71186 -34.08895 -32.24127 -31.12509 -28.35747 -27.95667 -27.47299 -24.22837 -23.48508 -21.84267 -20.46105 -19.31953 -18.98201 -18.24828 -16.68530 -16.12797 -15.57436 -15.33239 -14.69363 -14.64213 -14.03368 -13.86219 -13.61715 -13.27669 -13.17868 -12.97207 -12.25204 -12.16845 -12.06076 -11.82739 -11.53686 -11.13207 -10.99741 -10.88959 -10.77634 -10.59721 -10.06035 -9.86090 -9.78508 -9.26511 -8.91892 -8.82542 -8.60239 -8.41575 -6.92136 -5.78599 -3.11414 0.54215 1.49314 1.90176 2.34797 3.37168 3.38951 3.42765 3.42972 3.50421 4.41890 4.83672 4.87634 5.12050 5.19859 5.22439 5.38064 5.44022 5.46576 5.54517 5.67813 5.74689 5.88705 5.89664 6.07527 6.24227 6.31430 6.33811 6.38609 6.58128 6.68105 6.82187 7.20663 7.37286 7.56047 7.79909 7.95722 8.44227 9.01048 9.68392 10.60797 11.38430 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.017013 B = 0.005492 C = 0.004489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.419487 B = 5097.484977 C = 6236.661270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.119 4.119 3 C -0.244 4.244 4 S 0.212 5.788 5 C -0.254 4.254 6 C 0.585 3.415 7 O -0.540 6.540 8 N -0.708 5.708 9 C 0.122 3.878 10 C 0.126 3.874 11 H 0.049 0.951 12 C -0.160 4.160 13 C 0.152 3.848 14 N -0.601 5.601 15 C -0.216 4.216 16 H 0.079 0.921 17 C -0.005 4.005 18 N -0.918 5.918 19 Si 0.906 3.094 20 H -0.284 1.284 21 H -0.289 1.289 22 H -0.284 1.284 23 C -0.062 4.062 24 H 0.068 0.932 25 H 0.068 0.932 26 H 0.065 0.935 27 H 0.166 0.834 28 H 0.401 0.599 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.059 0.941 33 H 0.025 0.975 34 H 0.072 0.928 35 H 0.254 0.746 36 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.853 2.349 -9.501 16.155 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.132 4.132 3 C -0.381 4.381 4 S 0.481 5.519 5 C -0.375 4.375 6 C 0.370 3.630 7 O -0.420 6.420 8 N -0.357 5.357 9 C -0.002 4.002 10 C 0.018 3.982 11 H 0.066 0.934 12 C -0.199 4.199 13 C 0.026 3.974 14 N -0.327 5.327 15 C -0.343 4.343 16 H 0.096 0.904 17 C -0.202 4.202 18 N -0.564 5.564 19 Si 0.736 3.264 20 H -0.210 1.210 21 H -0.215 1.215 22 H -0.211 1.211 23 C -0.095 4.095 24 H 0.087 0.913 25 H 0.087 0.913 26 H 0.084 0.916 27 H 0.184 0.816 28 H 0.235 0.765 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.098 0.902 32 H 0.077 0.923 33 H 0.043 0.957 34 H 0.091 0.909 35 H 0.064 0.936 36 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -11.719 2.613 -9.148 15.095 hybrid contribution -1.618 0.418 0.814 1.859 sum -13.337 3.031 -8.334 16.016 Atomic orbital electron populations 1.20489 0.89585 1.02781 1.02223 1.18752 0.97790 0.91562 1.05142 1.25150 0.98929 1.03249 1.10812 1.83310 1.03315 0.98290 1.66952 1.24747 0.98147 0.97401 1.17198 1.16947 0.81910 0.87260 0.76865 1.90789 1.81846 1.18191 1.51195 1.45864 1.05094 1.11106 1.73651 1.21879 0.86720 0.90037 1.01606 1.22440 0.91330 0.93631 0.90835 0.93409 1.23652 0.98001 0.98280 0.99957 1.22028 0.88584 0.90492 0.96275 1.45688 1.06195 1.66288 1.14521 1.18788 0.92578 1.28488 0.94469 0.90357 1.24755 0.95832 1.01297 0.98272 1.69815 1.06847 1.50635 1.29126 0.86295 0.78464 0.79805 0.81845 1.21041 1.21485 1.21066 1.20610 0.90996 0.99837 0.98046 0.91297 0.91350 0.91624 0.81628 0.76457 0.91956 0.90770 0.90160 0.92278 0.95728 0.90921 0.93609 0.83080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.76 10.13 36.01 0.36 -0.40 16 2 C -0.12 -1.37 5.78 -106.45 -0.62 -1.98 16 3 C -0.24 -2.69 10.67 29.18 0.31 -2.38 16 4 S 0.21 2.74 22.16 -107.50 -2.38 0.36 16 5 C -0.25 -3.94 6.45 -36.79 -0.24 -4.17 16 6 C 0.58 10.71 7.78 -12.90 -0.10 10.61 16 7 O -0.54 -11.33 16.84 5.19 0.09 -11.24 16 8 N -0.71 -12.73 5.33 -61.65 -0.33 -13.06 16 9 C 0.12 2.25 5.52 -4.04 -0.02 2.23 16 10 C 0.13 2.42 4.10 -72.40 -0.30 2.12 16 11 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 12 C -0.16 -2.89 8.03 -26.22 -0.21 -3.10 16 13 C 0.15 3.45 7.40 -8.51 -0.06 3.39 16 14 N -0.60 -14.62 3.65 -177.00 -0.65 -15.27 16 15 C -0.22 -5.79 10.55 -15.06 -0.16 -5.95 16 16 H 0.08 2.03 7.50 -52.49 -0.39 1.63 16 17 C 0.00 -0.13 5.50 -17.43 -0.10 -0.23 16 18 N -0.92 -26.82 11.51 55.49 0.64 -26.18 16 19 Si 0.91 21.99 29.55 -169.99 -5.02 16.97 16 20 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 23 C -0.06 -0.85 9.80 -40.43 -0.40 -1.24 16 24 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 25 H 0.07 0.53 8.13 -51.93 -0.42 0.11 16 26 H 0.06 0.47 8.12 -51.93 -0.42 0.05 16 27 H 0.17 1.39 8.06 -52.48 -0.42 0.97 16 28 H 0.40 6.96 7.48 -40.82 -0.31 6.65 16 29 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.07 1.55 8.14 -51.93 -0.42 1.12 16 31 H 0.08 1.45 8.12 -51.93 -0.42 1.03 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 33 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.07 1.85 7.12 -51.93 -0.37 1.48 16 35 H 0.25 7.25 8.31 -40.82 -0.34 6.91 16 36 H 0.15 1.99 8.06 -52.48 -0.42 1.56 16 LS Contribution 321.81 15.07 4.85 4.85 Total: -1.00 -31.70 321.81 -9.18 -40.88 By element: Atomic # 1 Polarization: 8.65 SS G_CDS: -4.85 Total: 3.80 kcal Atomic # 6 Polarization: 0.41 SS G_CDS: -1.52 Total: -1.11 kcal Atomic # 7 Polarization: -54.17 SS G_CDS: -0.34 Total: -54.51 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: 0.09 Total: -11.24 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Atomic # 16 Polarization: 2.74 SS G_CDS: -2.38 Total: 0.36 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -31.70 -9.18 -40.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038229595.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.350 kcal (2) G-P(sol) polarization free energy of solvation -31.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.879 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds