Wall clock time and date at job start Tue Mar 31 2020 01:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.33819 * 122.44739 * 2 1 4 4 S 1.70611 * 110.95643 * 180.02562 * 3 2 1 5 5 C 1.75825 * 91.56474 * 359.97438 * 4 3 2 6 6 C 1.46582 * 125.46054 * 180.02562 * 5 4 3 7 7 O 1.21700 * 120.00044 * 180.02562 * 6 5 4 8 8 N 1.34773 * 119.99880 * 0.02701 * 6 5 4 9 9 C 1.46500 * 120.00055 * 179.97438 * 8 6 5 10 10 C 1.53002 * 109.47404 * 179.97438 * 9 8 6 11 11 H 1.08994 * 112.73622 * 303.76259 * 10 9 8 12 12 C 1.53495 * 113.47041 * 172.93944 * 10 9 8 13 13 C 1.53497 * 83.34454 * 219.15595 * 12 10 9 14 14 N 1.47066 * 113.46479 * 74.50242 * 10 9 8 15 15 C 1.36937 * 136.06113 * 321.64192 * 14 10 9 16 16 H 1.07995 * 120.00001 * 0.02562 * 15 14 10 17 17 C 1.38817 * 120.00320 * 179.97438 * 15 14 10 18 18 N 1.31620 * 119.99557 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99975 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47363 * 60.00463 * 19 17 15 21 21 H 1.48506 * 109.46719 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47174 * 300.00290 * 19 17 15 23 23 C 1.36648 * 109.08436 * 0.26376 * 5 4 3 24 24 H 1.08999 * 109.46841 * 89.98273 * 1 2 3 25 25 H 1.09005 * 109.46440 * 209.97433 * 1 2 3 26 26 H 1.08990 * 109.47619 * 329.97469 * 1 2 3 27 27 H 1.08003 * 124.51905 * 0.04145 * 3 2 1 28 28 H 0.96999 * 120.00230 * 359.97438 * 8 6 5 29 29 H 1.08998 * 109.47316 * 59.99433 * 9 8 6 30 30 H 1.09006 * 109.47204 * 299.99927 * 9 8 6 31 31 H 1.09006 * 114.20556 * 332.74032 * 12 10 9 32 32 H 1.08994 * 114.20812 * 105.36675 * 12 10 9 33 33 H 1.09007 * 113.46266 * 271.28548 * 13 12 10 34 34 H 1.08993 * 113.46849 * 140.85107 * 13 12 10 35 35 H 0.96999 * 119.99537 * 179.97438 * 18 17 15 36 36 H 1.08004 * 123.35667 * 179.73401 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1293 0.0000 4 16 3.8969 0.7894 -0.0007 5 6 3.5938 -0.9425 -0.0002 6 6 4.6233 -1.9860 0.0000 7 8 4.3004 -3.1594 -0.0001 8 7 5.9274 -1.6459 0.0005 9 6 6.9563 -2.6888 0.0013 10 6 8.3414 -2.0388 0.0010 11 1 8.4855 -1.3546 -0.8352 12 6 9.4884 -3.0438 0.1749 13 6 10.0883 -1.9359 1.0516 14 7 8.7182 -1.4628 1.3006 15 6 8.0771 -0.7807 2.3000 16 1 7.0243 -0.5566 2.2116 17 6 8.7800 -0.3783 3.4274 18 7 10.0629 -0.6519 3.5354 19 14 7.9051 0.5515 4.7910 20 1 6.8051 -0.2853 5.3340 21 1 8.8707 0.8648 5.8749 22 1 7.3443 1.8148 4.2479 23 6 2.2447 -1.1600 -0.0055 24 1 -0.3633 0.0003 -1.0277 25 1 -0.3632 -0.8903 0.5135 26 1 -0.3634 0.8896 0.5142 27 1 1.8024 2.1232 0.0006 28 1 6.1848 -0.7107 0.0002 29 1 6.8461 -3.3087 -0.8884 30 1 6.8454 -3.3080 0.8915 31 1 9.2131 -3.9461 0.7210 32 1 10.0471 -3.2469 -0.7387 33 1 10.6987 -1.2247 0.4950 34 1 10.5869 -2.3115 1.9450 35 1 10.5541 -0.3703 4.3230 36 1 1.8020 -2.1452 -0.0105 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001038229595.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:19:09 Heat of formation + Delta-G solvation = 28.046428 kcal Electronic energy + Delta-G solvation = -19304.084870 eV Core-core repulsion = 16301.865100 eV Total energy + Delta-G solvation = -3002.219770 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.97554 -39.85731 -38.89804 -35.60274 -34.25398 -32.14655 -29.99871 -29.43367 -28.55064 -25.46139 -25.38618 -23.35842 -21.79556 -20.99689 -19.95931 -19.55898 -18.44847 -17.36953 -17.13107 -16.89175 -16.31176 -15.95598 -15.65296 -15.09303 -14.92331 -14.62729 -14.50758 -14.06892 -13.66921 -13.36865 -13.17840 -12.95446 -12.88431 -12.79455 -12.71203 -12.61096 -12.34811 -11.90316 -11.82993 -11.65218 -11.37764 -10.95793 -10.82586 -10.22330 -9.82543 -9.38390 -8.89555 -7.87609 -5.19381 -0.51756 0.46611 0.93595 1.33696 1.43166 1.45768 1.51119 2.05393 2.16506 2.46958 3.33963 3.42631 3.72383 3.93347 4.04380 4.11535 4.19514 4.32308 4.38072 4.60351 4.67868 4.68135 4.83239 4.87452 4.91406 5.05697 5.06150 5.07468 5.31131 5.34297 5.38170 5.47790 5.58692 5.73661 5.97292 6.39113 6.93679 7.03993 7.63879 8.63500 9.29611 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.017013 B = 0.005492 C = 0.004489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.419487 B = 5097.484977 C = 6236.661270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C -0.128 4.128 3 C -0.224 4.224 4 S 0.214 5.786 5 C -0.296 4.296 6 C 0.583 3.417 7 O -0.577 6.577 8 N -0.708 5.708 9 C 0.129 3.871 10 C 0.131 3.869 11 H 0.070 0.930 12 C -0.132 4.132 13 C 0.144 3.856 14 N -0.629 5.629 15 C -0.210 4.210 16 H 0.083 0.917 17 C -0.066 4.066 18 N -0.951 5.951 19 Si 0.962 3.038 20 H -0.285 1.285 21 H -0.295 1.295 22 H -0.271 1.271 23 C -0.055 4.055 24 H 0.082 0.918 25 H 0.070 0.930 26 H 0.082 0.918 27 H 0.200 0.800 28 H 0.404 0.596 29 H 0.084 0.916 30 H 0.045 0.955 31 H 0.079 0.921 32 H 0.102 0.898 33 H 0.024 0.976 34 H 0.037 0.963 35 H 0.246 0.754 36 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.863 3.476 -10.786 18.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.140 4.140 3 C -0.362 4.362 4 S 0.483 5.517 5 C -0.416 4.416 6 C 0.371 3.629 7 O -0.460 6.460 8 N -0.357 5.357 9 C 0.005 3.995 10 C 0.024 3.976 11 H 0.087 0.913 12 C -0.171 4.171 13 C 0.018 3.982 14 N -0.355 5.355 15 C -0.338 4.338 16 H 0.100 0.900 17 C -0.259 4.259 18 N -0.601 5.601 19 Si 0.791 3.209 20 H -0.211 1.211 21 H -0.222 1.222 22 H -0.197 1.197 23 C -0.090 4.090 24 H 0.100 0.900 25 H 0.089 0.911 26 H 0.101 0.899 27 H 0.217 0.783 28 H 0.239 0.761 29 H 0.102 0.898 30 H 0.064 0.936 31 H 0.098 0.902 32 H 0.120 0.880 33 H 0.042 0.958 34 H 0.055 0.945 35 H 0.055 0.945 36 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -13.743 3.752 -10.472 17.681 hybrid contribution -1.067 0.078 1.136 1.561 sum -14.810 3.830 -9.335 17.921 Atomic orbital electron populations 1.20569 0.87086 1.03820 1.03416 1.19027 0.99493 0.90640 1.04866 1.25578 0.97603 1.04680 1.08318 1.83272 1.05114 0.96327 1.67021 1.24555 0.98022 0.98246 1.20762 1.17328 0.82292 0.87506 0.75802 1.90752 1.82376 1.19825 1.53030 1.45852 1.05154 1.11077 1.73643 1.21713 0.86532 0.90013 1.01266 1.22597 0.92130 0.93775 0.89052 0.91283 1.23472 0.96643 0.96546 1.00445 1.22045 0.88084 0.92224 0.95843 1.46004 1.07273 1.66135 1.16131 1.19113 0.92895 1.26838 0.94973 0.89969 1.25488 0.96578 1.03216 1.00648 1.69994 1.08128 1.52544 1.29409 0.85388 0.77164 0.79095 0.79240 1.21148 1.22158 1.19660 1.20866 0.90701 1.00863 0.96567 0.89965 0.91054 0.89927 0.78337 0.76119 0.89769 0.93613 0.90215 0.88011 0.95838 0.94483 0.94515 0.83253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.19 10.13 71.24 0.72 -0.47 16 2 C -0.13 -2.58 5.78 -21.05 -0.12 -2.71 16 3 C -0.22 -4.22 10.67 66.81 0.71 -3.51 16 4 S 0.21 5.14 22.16 -56.49 -1.25 3.89 16 5 C -0.30 -8.97 6.45 24.08 0.16 -8.81 16 6 C 0.58 21.40 7.78 86.42 0.67 22.07 16 7 O -0.58 -24.53 16.84 -4.35 -0.07 -24.60 16 8 N -0.71 -25.20 5.33 -467.17 -2.49 -27.69 16 9 C 0.13 4.67 5.52 86.38 0.48 5.15 16 10 C 0.13 4.86 4.10 41.79 0.17 5.03 16 11 H 0.07 2.36 8.14 -2.39 -0.02 2.34 16 12 C -0.13 -4.54 8.03 30.93 0.25 -4.30 16 13 C 0.14 6.55 7.40 83.18 0.62 7.17 16 14 N -0.63 -30.61 3.65 -713.90 -2.61 -33.22 16 15 C -0.21 -11.33 10.55 84.03 0.89 -10.44 16 16 H 0.08 4.25 7.50 -2.91 -0.02 4.23 16 17 C -0.07 -3.75 5.50 84.86 0.47 -3.28 16 18 N -0.95 -57.16 11.51 21.65 0.25 -56.91 16 19 Si 0.96 45.72 29.55 68.60 2.03 47.75 16 20 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 21 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 22 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 23 C -0.06 -1.46 9.80 21.72 0.21 -1.24 16 24 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 25 H 0.07 0.92 8.13 -2.38 -0.02 0.90 16 26 H 0.08 0.84 8.12 -2.39 -0.02 0.82 16 27 H 0.20 2.39 8.06 -2.91 -0.02 2.36 16 28 H 0.40 13.77 7.48 -92.71 -0.69 13.08 16 29 H 0.08 2.68 8.14 -2.39 -0.02 2.66 16 30 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 31 H 0.08 2.77 8.12 -2.38 -0.02 2.75 16 32 H 0.10 2.69 8.14 -2.39 -0.02 2.67 16 33 H 0.02 1.08 8.14 -2.38 -0.02 1.06 16 34 H 0.04 1.94 7.12 -2.39 -0.02 1.92 16 35 H 0.25 14.52 8.31 -92.71 -0.77 13.75 16 36 H 0.15 3.86 8.06 -2.91 -0.02 3.84 16 Total: -1.00 -70.07 321.81 1.47 -68.60 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: 0.40 Total: 17.52 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: 5.22 Total: 4.66 kcal Atomic # 7 Polarization: -112.96 SS G_CDS: -4.85 Total: -117.81 kcal Atomic # 8 Polarization: -24.53 SS G_CDS: -0.07 Total: -24.60 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Atomic # 16 Polarization: 5.14 SS G_CDS: -1.25 Total: 3.89 kcal Total: -70.07 1.47 -68.60 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038229595.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.643 kcal (2) G-P(sol) polarization free energy of solvation -70.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds