Wall clock time and date at job start Tue Mar 31 2020 01:19:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.33822 * 122.45267 * 2 1 4 4 S 1.70616 * 110.95300 * 180.25143 * 3 2 1 5 5 C 1.75838 * 91.56662 * 359.72866 * 4 3 2 6 6 C 1.46574 * 125.46215 * 179.97438 * 5 4 3 7 7 O 1.21696 * 120.00361 * 180.02562 * 6 5 4 8 8 N 1.34786 * 119.99790 * 0.02630 * 6 5 4 9 9 C 1.46498 * 119.99873 * 179.97438 * 8 6 5 10 10 C 1.53001 * 109.47143 * 180.02562 * 9 8 6 11 11 H 1.09000 * 112.96288 * 53.31863 * 10 9 8 12 12 C 1.53942 * 113.76964 * 185.00218 * 10 9 8 13 13 C 1.53945 * 86.29123 * 137.90993 * 12 10 9 14 14 N 1.47579 * 113.76758 * 281.49685 * 10 9 8 15 15 C 1.36937 * 134.49627 * 41.05680 * 14 10 9 16 16 H 1.07998 * 119.99701 * 353.49071 * 15 14 10 17 17 C 1.38813 * 120.00401 * 173.48332 * 15 14 10 18 18 N 1.31619 * 119.99887 * 5.07317 * 17 15 14 19 19 Si 1.86789 * 120.00234 * 185.07160 * 17 15 14 20 20 H 1.48503 * 109.47240 * 94.98923 * 19 17 15 21 21 H 1.48498 * 109.47297 * 214.98962 * 19 17 15 22 22 H 1.48505 * 109.47485 * 334.99011 * 19 17 15 23 23 C 1.36651 * 109.07973 * 0.02562 * 5 4 3 24 24 H 1.08999 * 109.46885 * 270.25686 * 1 2 3 25 25 H 1.08997 * 109.46708 * 30.24679 * 1 2 3 26 26 H 1.08998 * 109.47356 * 150.25330 * 1 2 3 27 27 H 1.07994 * 124.51963 * 359.94536 * 3 2 1 28 28 H 0.96993 * 119.99966 * 359.97438 * 8 6 5 29 29 H 1.08996 * 109.47335 * 300.00394 * 9 8 6 30 30 H 1.09002 * 109.46897 * 60.00219 * 9 8 6 31 31 H 1.09005 * 113.74269 * 252.25462 * 12 10 9 32 32 H 1.08999 * 113.74238 * 23.45591 * 12 10 9 33 33 H 1.08998 * 113.77328 * 90.69139 * 13 12 10 34 34 H 1.08999 * 113.76805 * 221.98264 * 13 12 10 35 35 H 0.96995 * 120.00267 * 179.97438 * 18 17 15 36 36 H 1.07999 * 123.35207 * 180.02562 * 23 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2251 1.1292 0.0000 4 16 3.8970 0.7891 -0.0070 5 6 3.5937 -0.9429 -0.0016 6 6 4.6229 -1.9865 -0.0046 7 8 4.3000 -3.1598 -0.0008 8 7 5.9272 -1.6466 -0.0114 9 6 6.9560 -2.6896 -0.0138 10 6 8.3411 -2.0397 -0.0211 11 1 8.4749 -1.3147 0.7818 12 6 9.4984 -3.0470 -0.1469 13 6 10.1312 -2.0450 -1.1295 14 7 8.7595 -1.5460 -1.3474 15 6 8.1284 -0.8889 -2.3697 16 1 7.0625 -0.7204 -2.3268 17 6 8.8588 -0.4391 -3.4612 18 7 10.1383 -0.7305 -3.5620 19 14 8.0256 0.5796 -4.7868 20 1 8.2305 2.0230 -4.5038 21 1 8.6127 0.2463 -6.1094 22 1 6.5713 0.2796 -4.8009 23 6 2.2445 -1.1601 0.0046 24 1 -0.3633 0.0046 1.0277 25 1 -0.3632 0.8878 -0.5177 26 1 -0.3634 -0.8922 -0.5099 27 1 1.8026 2.1231 -0.0008 28 1 6.1846 -0.7114 -0.0148 29 1 6.8494 -3.3070 0.8781 30 1 6.8411 -3.3111 -0.9018 31 1 10.0678 -3.1785 0.7733 32 1 9.2095 -3.9921 -0.6066 33 1 10.7918 -1.3203 -0.6534 34 1 10.5754 -2.5123 -2.0083 35 1 10.6486 -0.4166 -4.3248 36 1 1.8018 -2.1452 0.0092 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001038229596.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:19:11 Heat of formation + Delta-G solvation = 44.537051 kcal Electronic energy + Delta-G solvation = -19265.125558 eV Core-core repulsion = 16263.620875 eV Total energy + Delta-G solvation = -3001.504683 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 280.099 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.56186 -38.26255 -37.64200 -34.10409 -32.20986 -31.13336 -28.36635 -27.90399 -27.49962 -24.27614 -23.37449 -21.97395 -20.47597 -19.23874 -18.98896 -18.23812 -16.65274 -16.13837 -15.57235 -15.35430 -14.70203 -14.66485 -14.02833 -13.85357 -13.63473 -13.29039 -13.19533 -12.99317 -12.25925 -12.16857 -12.06830 -11.81172 -11.46492 -11.11763 -11.02570 -10.90294 -10.75711 -10.54250 -10.09283 -9.81560 -9.74118 -9.40320 -8.93656 -8.80963 -8.61815 -8.42609 -6.89521 -5.79119 -3.10686 0.53162 1.48219 1.89019 2.33899 3.36434 3.38209 3.43370 3.44823 3.48946 4.42483 4.82599 4.86682 5.08424 5.16226 5.21089 5.38092 5.43426 5.45770 5.59547 5.67035 5.74070 5.87610 5.90133 6.06130 6.23277 6.30358 6.33141 6.39077 6.60358 6.67584 6.82669 7.24637 7.38486 7.58591 7.78338 7.96744 8.42870 9.03132 9.69697 10.58569 11.38168 Molecular weight = 280.10amu Principal moments of inertia in cm(-1) A = 0.017131 B = 0.005396 C = 0.004421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1634.089307 B = 5187.341770 C = 6331.439000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.119 4.119 3 C -0.243 4.243 4 S 0.212 5.788 5 C -0.254 4.254 6 C 0.585 3.415 7 O -0.540 6.540 8 N -0.708 5.708 9 C 0.124 3.876 10 C 0.124 3.876 11 H 0.050 0.950 12 C -0.155 4.155 13 C 0.162 3.838 14 N -0.602 5.602 15 C -0.221 4.221 16 H 0.078 0.922 17 C -0.004 4.004 18 N -0.917 5.917 19 Si 0.902 3.098 20 H -0.289 1.289 21 H -0.290 1.290 22 H -0.280 1.280 23 C -0.061 4.061 24 H 0.068 0.932 25 H 0.065 0.935 26 H 0.068 0.932 27 H 0.166 0.834 28 H 0.401 0.599 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.054 0.946 32 H 0.077 0.923 33 H 0.028 0.972 34 H 0.070 0.930 35 H 0.253 0.747 36 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.066 2.526 9.705 16.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.132 4.132 3 C -0.381 4.381 4 S 0.481 5.519 5 C -0.375 4.375 6 C 0.370 3.630 7 O -0.420 6.420 8 N -0.358 5.358 9 C -0.001 4.001 10 C 0.016 3.984 11 H 0.067 0.933 12 C -0.194 4.194 13 C 0.037 3.963 14 N -0.328 5.328 15 C -0.349 4.349 16 H 0.096 0.904 17 C -0.201 4.201 18 N -0.563 5.563 19 Si 0.733 3.267 20 H -0.216 1.216 21 H -0.217 1.217 22 H -0.205 1.205 23 C -0.095 4.095 24 H 0.087 0.913 25 H 0.084 0.916 26 H 0.087 0.913 27 H 0.184 0.816 28 H 0.235 0.765 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.073 0.927 32 H 0.095 0.905 33 H 0.046 0.954 34 H 0.088 0.912 35 H 0.063 0.937 36 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -11.924 2.765 9.367 15.413 hybrid contribution -1.592 0.493 -0.831 1.862 sum -13.516 3.258 8.535 16.314 Atomic orbital electron populations 1.20490 0.89577 1.02789 1.02230 1.18754 0.97798 0.91561 1.05124 1.25147 0.98912 1.03252 1.10804 1.83291 1.03354 0.98299 1.66982 1.24743 0.98144 0.97387 1.17216 1.16943 0.81895 0.87262 0.76852 1.90790 1.81832 1.18195 1.51146 1.45866 1.05116 1.11080 1.73726 1.21828 0.86568 0.90001 1.01675 1.22521 0.91419 0.94167 0.90280 0.93256 1.23784 0.97426 0.98584 0.99647 1.22134 0.88022 0.91032 0.95126 1.46066 1.07468 1.68116 1.11199 1.18948 0.91509 1.28691 0.95738 0.90375 1.24779 0.95714 1.00888 0.98735 1.69832 1.06676 1.49015 1.30826 0.86240 0.78617 0.80403 0.81472 1.21577 1.21675 1.20515 1.20614 0.90999 0.99844 0.98013 0.91292 0.91621 0.91340 0.81623 0.76488 0.91840 0.90696 0.92738 0.90462 0.95371 0.91216 0.93669 0.83072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.76 10.13 36.00 0.36 -0.39 16 2 C -0.12 -1.35 5.78 -106.45 -0.62 -1.97 16 3 C -0.24 -2.66 10.67 29.18 0.31 -2.35 16 4 S 0.21 2.69 22.16 -107.50 -2.38 0.31 16 5 C -0.25 -3.90 6.45 -36.80 -0.24 -4.14 16 6 C 0.59 10.63 7.78 -12.89 -0.10 10.53 16 7 O -0.54 -11.25 16.84 5.19 0.09 -11.17 16 8 N -0.71 -12.61 5.51 -61.65 -0.34 -12.95 16 9 C 0.12 2.27 5.54 -4.04 -0.02 2.25 16 10 C 0.12 2.38 4.33 -66.87 -0.29 2.09 16 11 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 12 C -0.16 -2.81 7.86 -25.81 -0.20 -3.01 16 13 C 0.16 3.69 7.42 -2.97 -0.02 3.67 16 14 N -0.60 -14.65 3.57 -170.76 -0.61 -15.26 16 15 C -0.22 -5.95 10.50 -15.06 -0.16 -6.11 16 16 H 0.08 2.05 7.79 -52.49 -0.41 1.64 16 17 C 0.00 -0.12 5.50 -17.43 -0.10 -0.21 16 18 N -0.92 -26.80 11.51 55.49 0.64 -26.16 16 19 Si 0.90 22.00 29.56 -169.99 -5.02 16.97 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 22 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 23 C -0.06 -0.84 9.80 -40.43 -0.40 -1.23 16 24 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 25 H 0.06 0.46 8.12 -51.93 -0.42 0.04 16 26 H 0.07 0.53 8.13 -51.93 -0.42 0.11 16 27 H 0.17 1.37 8.06 -52.49 -0.42 0.95 16 28 H 0.40 6.84 7.59 -40.82 -0.31 6.53 16 29 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 30 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.08 1.37 8.10 -51.93 -0.42 0.95 16 33 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 1.76 7.36 -51.93 -0.38 1.38 16 35 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 36 H 0.15 1.97 8.06 -52.49 -0.42 1.55 16 LS Contribution 322.59 15.07 4.86 4.86 Total: -1.00 -31.81 322.59 -9.11 -40.93 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -4.88 Total: 3.35 kcal Atomic # 6 Polarization: 0.58 SS G_CDS: -1.46 Total: -0.88 kcal Atomic # 7 Polarization: -54.06 SS G_CDS: -0.31 Total: -54.37 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: 0.09 Total: -11.17 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Atomic # 16 Polarization: 2.69 SS G_CDS: -2.38 Total: 0.31 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.81 -9.11 -40.93 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001038229596.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.466 kcal (2) G-P(sol) polarization free energy of solvation -31.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds